Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

48970589 .. 48973574

Gene Structure 2986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0375700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTTTCCTTTCCCTCATGATCATCAAAGCAAAGATTTTGAATTACAAATGTATTCGACTCCCCACCAGAAAGATTTTATGCAACAGGATCTGATCATGATGCAGGGTAGTCATGAGGTTTTGCCATCTGATCTTCAGGGACGTAGTCTATCCAATATTAATATTAGTAAAGCAAATATTAATAATATGGCTACTGATCCTGACGAAAGGAAGATCATGCGTAGGGACAATGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATCCCTCCTCCCTCTTGAATTAATTAAGCTGAAGGAGAAGATACAGGAGCTGAATGCCAAGAAGGAAGAGCTTAGAAGGGTGTATAAACATTACAGTAGTTCTGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAATAGTACAAATTGCAGTGAGCTAGAAGGGTTTTCTCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACTGCAGCAAATAAGAGGTCGTTTCACTCTATTCAGTGTGAGGTCGACGATTTGGCATGTATGGATTTGTCTGAGCTACAACTGAAACTAAATTTTTTATGCAATTCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

232

Amino Acids

26.16

Weight (kDa)

5.99

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	630
AclWI	GGATC	3 cut(s)	96, 191, 273
AcsI	RAATTY	2 cut(s)	412, 676
AcuI	CTGAAG	2 cut(s)	119, 329
AfaI	GTAC	5 cut(s)	421, 430, 487, 496, 537
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	2 cut(s)	41, 296
AluBI	AGCT	5 cut(s)	307, 328, 349, 511, 661
AluI	AGCT	5 cut(s)	307, 328, 349, 511, 661
AlwI	GGATC	3 cut(s)	96, 191, 273
AlwNI	CAGNNNCTG	2 cut(s)	91, 328
AoxI	GGCC	2 cut(s)	448, 559
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	2 cut(s)	412, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AseI	ATTAAT	4 cut(s)	159, 180, 299, 405
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	449, 559
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	1 cut(s)	133
BclI	TGATCA	2 cut(s)	19, 93
BfaI	CTAG	2 cut(s)	512, 697
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	238
BisI	GCNGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	592
BmcAI	AGTACT	3 cut(s)	430, 487, 537
BmgT120I	GGNCC	2 cut(s)	449, 559
BmsI	GCATC	2 cut(s)	90, 278
BpiI	GAAGAC	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	545
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	648
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	602
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	450, 561
BslFI	GGGAC	2 cut(s)	153, 239
BsmFI	GGGAC	2 cut(s)	153, 239
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	450, 561
Bsp143I	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
BspANI	GGCC	2 cut(s)	450, 561
BspCNI	CTCAG	1 cut(s)	649
BspHI	TCATGA	3 cut(s)	16, 96, 112
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	3 cut(s)	96, 191, 273
BspQI	GCTCTTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	545
BssMI	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
Bst4CI	ACNGT	2 cut(s)	374, 568
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	350, 423, 657
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	7 cut(s)	22, 91, 96, 133, 199, 216, 281
BstMBI	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
BstMWI	GCNNNNNNNGC	3 cut(s)	551, 587, 693
BstNSI	RCATGY	2 cut(s)	459, 645
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	602
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	2 cut(s)	442, 459
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	450, 561
BtsI	GCAGTG	3 cut(s)	264, 511, 585
BtsIMutI	CAGTG	4 cut(s)	264, 511, 585, 626
Cac8I	GCNNGC	1 cut(s)	552
CaiI	CAGNNNCTG	2 cut(s)	91, 328
CciI	TCATGA	3 cut(s)	16, 96, 112
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	449, 559
Csp6I	GTAC	5 cut(s)	420, 429, 486, 495, 536
CviAII	CATG	8 cut(s)	17, 97, 113, 217, 386, 442, 456, 642
CviJI	RGCY	9 cut(s)	191, 307, 328, 349, 450, 511, 561, 661, 696
CviKI_1	RGCY	9 cut(s)	191, 307, 328, 349, 450, 511, 561, 661, 696
CviQI	GTAC	5 cut(s)	420, 429, 486, 495, 536
DdeI	CTNAG	3 cut(s)	350, 423, 657
DpnI	GATC	7 cut(s)	21, 90, 95, 132, 198, 215, 280
DpnII	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco57I	CTGAAG	2 cut(s)	119, 329
EcoO109I	RGGNCCY	1 cut(s)	559
FaeI	CATG	8 cut(s)	20, 100, 116, 220, 389, 445, 459, 645
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	2 cut(s)	153, 239
FatI	CATG	8 cut(s)	16, 96, 112, 216, 385, 441, 455, 641
FbaI	TGATCA	2 cut(s)	19, 93
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	1 cut(s)	591
Fsp4HI	GCNGC	1 cut(s)	591
FspBI	CTAG	2 cut(s)	512, 697
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	450, 561
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	8 cut(s)	20, 100, 116, 220, 389, 445, 459, 645
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	2 cut(s)	58, 259
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	3 cut(s)	93, 130, 658
Hpy188III	TCNNGA	7 cut(s)	17, 97, 113, 200, 293, 398, 531
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	4 cut(s)	304, 334, 348, 509
HpyCH4III	ACNGT	2 cut(s)	374, 568
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	8 cut(s)	82, 103, 269, 383, 504, 554, 590, 687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	551, 587, 693
HpyF3I	CTNAG	3 cut(s)	350, 423, 657
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	8 cut(s)	20, 100, 116, 220, 389, 445, 459, 645
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	2 cut(s)	19, 93
Kzo9I	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	9 cut(s)	71, 80, 89, 122, 213, 308, 411, 516, 678
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	2 cut(s)	90, 278
MaeI	CTAG	2 cut(s)	512, 697
MaeII	ACGT	1 cut(s)	142
MalI	GATC	7 cut(s)	21, 90, 95, 132, 198, 215, 280
MboI	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
MboII	GAAGA	5 cut(s)	125, 223, 255, 328, 356
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	8 cut(s)	41, 296, 300, 402, 412, 499, 676, 688
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	8 cut(s)	24, 109, 293, 296, 300, 550, 594, 619
MseI	TTAA	5 cut(s)	159, 180, 299, 303, 405
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	551, 587, 693
NdeII	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
NlaIII	CATG	8 cut(s)	20, 100, 116, 220, 389, 445, 459, 645
NspI	RCATGY	2 cut(s)	459, 645
PacI	TTAATTAA	1 cut(s)	303
PagI	TCATGA	3 cut(s)	16, 96, 112
PciI	ACATGT	1 cut(s)	455
PciSI	GCTCTTC	1 cut(s)	339
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	259
PflFI	GACNNNGTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	592
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PscI	ACATGT	1 cut(s)	455
PshBI	ATTAAT	4 cut(s)	159, 180, 299, 405
PspPI	GGNCC	2 cut(s)	449, 559
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	2 cut(s)	91, 328
PsuI	RGATCY	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	144
RsaI	GTAC	5 cut(s)	421, 430, 487, 496, 537
RsaNI	GTAC	5 cut(s)	420, 429, 486, 495, 536
SalI	GTCGAC	1 cut(s)	629
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	159, 180, 299, 303, 405
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	7 cut(s)	19, 88, 93, 130, 196, 213, 278
Sau96I	GGNCC	2 cut(s)	449, 559
ScaI	AGTACT	3 cut(s)	430, 487, 537
SchI	GAGTC	1 cut(s)	52
SetI	ASST	9 cut(s)	120, 145, 309, 330, 351, 513, 605, 630, 663
SfaNI	GCATC	2 cut(s)	90, 278
SfcI	CTRYAG	1 cut(s)	588
Sse9I	AATT	8 cut(s)	41, 296, 300, 402, 412, 499, 676, 688
SspI	AATATT	3 cut(s)	157, 163, 178
SspMI	CTAG	2 cut(s)	512, 697
TaaI	ACNGT	2 cut(s)	374, 568
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	56, 277, 630
TasI	AATT	8 cut(s)	41, 296, 300, 402, 412, 499, 676, 688
TatI	WGTACW	4 cut(s)	428, 485, 494, 535
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	5 cut(s)	159, 180, 299, 303, 405
Tru9I	TTAA	5 cut(s)	159, 180, 299, 303, 405
TscAI	CASTG	4 cut(s)	271, 511, 592, 626
TseI	GCWGC	1 cut(s)	590
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	4 cut(s)	271, 511, 592, 626
Tth111I	GACNNNGTC	1 cut(s)	144
VspI	ATTAAT	4 cut(s)	159, 180, 299, 405
XapI	RAATTY	2 cut(s)	412, 676
XceI	RCATGY	2 cut(s)	459, 645
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	2 cut(s)	512, 697
ZrmI	AGTACT	3 cut(s)	430, 487, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.