Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Reverse (-)

19124563 .. 19126694

Gene Structure 2132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTATAGAGACAGAGGAACGGTGAATTCGAGACCTGAAGTTGTGGATCGTAAACGGATCAACGACGCTCTTGAACGTCCTTCTCCTTCAACCTCTCGTCAAGTTAACGGCAAAGGCAAAGGAACCGTTACGGCGGCGACGACGACGGCGAACTTGATTGGGAAGCAGCAGTCGAATAACATCAACCATAGAGATTCTCGTTCTGCTTCTCTCTCGAAGAACAATACGGTTTCTGATGATGAATCAGACACAGATAGTGAAGAATCAGATGTGAGTGGTTCTGATGGAGAGGACACTTCATGGATATCTTGGTTTTGTAATCTAAGAGGAAACGAGTTCTTTTGTGAAGTTGATGATGATTACATTCAAGATGACTTCAACTTGTGTGGACTCAGCAGTCTAGTTCCCTACTACGAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCAAGGAGAGATGTTTACAGAGGAACAGAATGAATTGATCGAGTCAGCAGCTGAGATGTTGTATGGACTGATTCATGCTCGTTACATATTGACTAGCAAAGGATTGGCAGCAATGTTAGACAAATACAAAAACTATGACTTTGGAAGATGTCCAAGAGTTTATTGCTGTGGCCAACCTTGTCTTCCGGTTGGTCAATCAGACTTACCGCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGACATTTATTACCCACGATCAAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCCTGATGACTTATGGGCATCTCAAGCCAGCGAAGGCAACACAAAACTATGTTCAAAGAGTGTTTGGGTTCAAATTACACAAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

287

Amino Acids

32.35

Weight (kDa)

5.14

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	100 - 283	3.1e-76	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
AccII	CGCG	1 cut(s)	661
AciI	CCGC	2 cut(s)	134, 659
AclI	AACGTT	1 cut(s)	761
AclWI	GGATC	2 cut(s)	54, 65
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	419
AgsI	TTSAA	7 cut(s)	74, 90, 368, 379, 446, 830, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	2 cut(s)	503, 746
AluI	AGCT	2 cut(s)	503, 746
Alw26I	GTCTC	2 cut(s)	3, 25
AlwI	GGATC	2 cut(s)	54, 65
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	3 cut(s)	166, 500, 560
ApoI	RAATTY	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	624
BbsI	GAAGAC	2 cut(s)	626, 705
BbvI	GCAGC	3 cut(s)	178, 512, 572
BccI	CCATC	2 cut(s)	278, 734
BceAI	ACGGC	3 cut(s)	124, 147, 162
BcoDI	GTCTC	2 cut(s)	3, 25
BfaI	CTAG	3 cut(s)	401, 546, 666
BisI	GCNGC	4 cut(s)	135, 167, 501, 561
BlsI	GCNGC	4 cut(s)	136, 168, 502, 562
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	802
BpiI	GAAGAC	2 cut(s)	626, 705
BpuEI	CTTGAG	2 cut(s)	438, 782
BsaI	GGTCTC	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	637
Bse3DI	GCAATG	1 cut(s)	570
BseGI	GGATG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	406, 495
BseXI	GCAGC	3 cut(s)	178, 512, 572
Bsh1236I	CGCG	1 cut(s)	661
BshFI	GGCC	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	1 cut(s)	769
BsmAI	GTCTC	2 cut(s)	3, 25
BsmFI	GGGAC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	46, 57, 489, 662, 716
BspACI	CCGC	2 cut(s)	134, 659
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	405, 496
BspFNI	CGCG	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	54, 65
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	570
BssMI	GATC	5 cut(s)	46, 57, 489, 662, 716
Bst4CI	ACNGT	5 cut(s)	22, 127, 229, 673, 861
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	3 cut(s)	323, 392, 504
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	661
BstKTI	GATC	5 cut(s)	49, 60, 492, 665, 719
BstMAI	GTCTC	2 cut(s)	3, 25
BstMBI	GATC	5 cut(s)	46, 57, 489, 662, 716
BstMWI	GCNNNNNNNGC	2 cut(s)	693, 799
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	178, 512, 572
BstV2I	GAAGAC	2 cut(s)	626, 705
BsuRI	GGCC	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	804
CaiI	CAGNNNCTG	1 cut(s)	503
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	2 cut(s)	300, 527
CviJI	RGCY	4 cut(s)	503, 624, 746, 802
CviKI_1	RGCY	4 cut(s)	503, 624, 746, 802
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	323, 392, 504
DpnI	GATC	5 cut(s)	48, 59, 491, 664, 718
DpnII	GATC	5 cut(s)	46, 57, 489, 662, 716
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	306
FaeI	CATG	2 cut(s)	303, 530
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	2 cut(s)	299, 526
Fnu4HI	GCNGC	4 cut(s)	135, 167, 501, 561
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	4 cut(s)	135, 167, 501, 561
FspBI	CTAG	3 cut(s)	401, 546, 666
GluI	GCNGC	4 cut(s)	135, 167, 501, 561
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	1 cut(s)	638
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	303, 530
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	7 cut(s)	194, 242, 263, 390, 446, 494, 523
HpaI	GTTAAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	4 cut(s)	53, 106, 389, 468
Hpy188I	TCNGA	5 cut(s)	235, 247, 268, 283, 652
Hpy188III	TCNNGA	6 cut(s)	30, 71, 214, 368, 425, 778
Hpy8I	GTNNAC	4 cut(s)	53, 106, 389, 468
Hpy99I	CGWCG	4 cut(s)	68, 142, 145, 148
HpyAV	CCTTC	3 cut(s)	90, 96, 802
HpyCH4III	ACNGT	5 cut(s)	22, 127, 229, 673, 861
HpyCH4IV	ACGT	2 cut(s)	76, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	693, 799
HpyF3I	CTNAG	3 cut(s)	323, 392, 504
HpySE526I	ACGT	2 cut(s)	76, 761
Hsp92II	CATG	2 cut(s)	303, 530
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	46, 57, 489, 662, 716
LmnI	GCTCC	1 cut(s)	743
LpnPI	CCDG	4 cut(s)	48, 651, 791, 816
Lsp1109I	GCAGC	3 cut(s)	178, 512, 572
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	3 cut(s)	401, 546, 666
MaeII	ACGT	2 cut(s)	76, 761
MaeIII	GTNAC	2 cut(s)	127, 533
MalI	GATC	5 cut(s)	48, 59, 491, 664, 718
MboI	GATC	5 cut(s)	46, 57, 489, 662, 716
MboII	GAAGA	7 cut(s)	229, 272, 441, 609, 626, 688, 710
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	3 cut(s)	25, 485, 848
MluNI	TGGCCA	1 cut(s)	624
MlyI	GAGTC	2 cut(s)	384, 503
MnlI	CCTC	5 cut(s)	8, 103, 283, 320, 466
Mox20I	TGGCCA	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	624
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	638
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	2 cut(s)	693, 799
NdeII	GATC	5 cut(s)	46, 57, 489, 662, 716
NlaIII	CATG	2 cut(s)	303, 530
NlaIV	GGNNCC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	3 cut(s)	26, 137, 146
PfeI	GAWTC	5 cut(s)	194, 242, 263, 446, 523
PkrI	GCNGC	4 cut(s)	136, 168, 502, 562
PleI	GAGTC	2 cut(s)	384, 502
PpsI	GAGTC	2 cut(s)	384, 502
Psp1406I	AACGTT	1 cut(s)	761
PspN4I	GGNNCC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	135, 167, 501, 561
Sau3AI	GATC	5 cut(s)	46, 57, 489, 662, 716
SchI	GAGTC	2 cut(s)	384, 503
SetI	ASST	7 cut(s)	37, 79, 95, 505, 631, 748, 764
SfaNI	GCATC	1 cut(s)	802
SmlI	CTYRAG	2 cut(s)	453, 797
SmoI	CTYRAG	2 cut(s)	453, 797
Sse9I	AATT	3 cut(s)	25, 485, 848
SsiI	CCGC	2 cut(s)	134, 659
SspMI	CTAG	3 cut(s)	401, 546, 666
TaaI	ACNGT	5 cut(s)	22, 127, 229, 673, 861
TaiI	ACGT	2 cut(s)	79, 764
TaqI	TCGA	4 cut(s)	29, 173, 215, 492
TasI	AATT	3 cut(s)	25, 485, 848
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	5 cut(s)	194, 242, 263, 446, 523
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	676
TseI	GCWGC	3 cut(s)	166, 500, 560
TspDTI	ATGAA	4 cut(s)	255, 288, 498, 515
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	676
XapI	RAATTY	1 cut(s)	25
XspI	CTAG	3 cut(s)	401, 546, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.