Rroxscaffold_3G00251520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006458
Physical Location & Seq
Reverse (-)
45380765 .. 45381081
317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251520.1

Sequence Viewer

Length: 300 bp
ATGGCAGATTGGAGATGGAATTCTATCGATAATGCAGCTTCTGATCGCCAAATTCGCCATCCTTCCTCAACAGTTCGTGGCTTAGCCTGCTGGTTCCCAAAACGCATAGCAGCATATGCTGTCCTTACCGCACGTGACAAAAAGCACACTCTCTTAATGGTGAGTGGACCCCACATCGGAGGGTCAGAGGAGAGAGAGGGAATGTCAACCCAGTTTCTTCTCAGAGCAGGCTATTCCCATTCCGGCACCATCGCATTCCCCAAATTCCTTTTCCTCCTTCAATTTTTCTCATTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.22

Weight (kDa)

10.0

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 1 cut(s) 129
AcsI RAATTY 3 cut(s) 19, 51, 263
AcvI CACGTG 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 35, 110
ApoI RAATTY 3 cut(s) 19, 51, 263
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 245
BbrPI CACGTG 1 cut(s) 134
BbvI GCAGC 2 cut(s) 47, 122
BccI CCATC 3 cut(s) 9, 66, 257
BisI GCNGC 2 cut(s) 36, 111
BlpI GCTNAGC 1 cut(s) 82
BlsI GCNGC 2 cut(s) 37, 112
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 95, 169, 247
BmrI ACTGGG 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 27
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 47, 122
BshNI GGYRCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 27
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 176
BsmI GAATGC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 43
Bsp1720I GCTNAGC 1 cut(s) 82
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 95, 169, 247
BspT107I GGYRCC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 88, 229
BstDEI CTNAG 2 cut(s) 82, 221
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 54, 87, 116
BstV1I GCAGC 2 cut(s) 47, 122
Bsu15I ATCGAT 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 88, 229
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 167
ClaI ATCGAT 1 cut(s) 27
CviJI RGCY 4 cut(s) 38, 81, 86, 231
CviKI_1 RGCY 4 cut(s) 38, 81, 86, 231
DdeI CTNAG 2 cut(s) 82, 221
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 167
Eco72I CACGTG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 19
FaiI YATR 3 cut(s) 107, 115, 117
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 36, 111
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 36, 111
GluI GCNGC 2 cut(s) 36, 111
HapII CCGG 1 cut(s) 243
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 167, 207
Hpy188I TCNGA 4 cut(s) 43, 179, 187, 224
Hpy8I GTNNAC 2 cut(s) 167, 207
HpyAV CCTTC 2 cut(s) 72, 287
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 87, 116
HpyF3I CTNAG 2 cut(s) 82, 221
HpySE526I ACGT 1 cut(s) 133
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 5 cut(s) 76, 100, 213, 224, 256
Lsp1109I GCAGC 2 cut(s) 47, 122
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 209
MluCI AATT 5 cut(s) 19, 51, 263, 281, 295
MnlI CCTC 5 cut(s) 76, 173, 181, 190, 284
MseI TTAA 2 cut(s) 155, 294
MspI CCGG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 54, 87, 116
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 43
NlaIV GGNNCC 3 cut(s) 95, 169, 247
NmuCI GTSAC 1 cut(s) 134
PctI GAATGC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 37, 112
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 134
PspCI CACGTG 1 cut(s) 134
PspN4I GGNNCC 3 cut(s) 95, 169, 247
PspPI GGNCC 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 155, 294
SatI GCNGC 2 cut(s) 36, 111
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 167
SetI ASST 2 cut(s) 40, 136
SgeI CNNG 8 cut(s) 89, 99, 103, 144, 146, 223, 240, 255
SinI GGWCC 1 cut(s) 167
Sse9I AATT 5 cut(s) 19, 51, 263, 281, 295
SsiI CCGC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 27
TasI AATT 5 cut(s) 19, 51, 263, 281, 295
Tru1I TTAA 2 cut(s) 155, 294
Tru9I TTAA 2 cut(s) 155, 294
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 35, 110
Tsp45I GTSAC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 3 cut(s) 19, 51, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.