Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

27389365 .. 27391438

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G268900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAAAAATAAAGATGAGCGAGGTGTAATTAGATCACGTTCTGAACCGGCTTTGAATCCCAATCGACTCAAAGACAAATCTTTGGCTCCCTCTACCTCTACCTCACTTGCTGCCAATTATCGCAATATTGATGCATCCTATGATCAGGGGGAATCAGCTGAAACAAGTTGCAAAGGTTCAGATGTTAGATGCCTTGATGATGAAGATGCATCTTGGATATCATGGTTCTGCAATCAGAAAGGGAATGAATTCTTTTGTGAAGTGGACGATGACTACATCCTGGATGATTTCAACCGTTCTGGTTTAAGAAATCAAGTCCCATTCTATGATTATGCACTGGACTTAATTTTGGACGTTGAGTCTTCCAATGATGGTACTTTAACTGATGATGAACAGAACAATGTGATCGAATCCGCAGCAGAGATGCTCTATGGTTTAATTCATGGCAGATACATAGCTACTAACAAAGGATTGTCTGCAATGTTGGAGAAGTACAGGAACTATGACTTCGGCAGATGTCCAAGAATTCACTGCAATAAACAACGATGTCTGCCTGTTGGCCAGTCAGACATCCCAAGGTTAAGTACTGTCAAAATCTACTGTCCCAAGTGTGAAGACATTTATGCCCCACAATCCAAACACCAAGATCAAATTGATGGGGCATATTTTGGAACCACATTTCCTCACCTTTTTTTCTTGACCTACGGCCATCTTAAACCGCAGAAGGCGAGTCAGAATTATGTTCGGAGAATATATGGCTTCAAAGTCCACAAGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

261

Amino Acids

29.75

Weight (kDa)

5.46

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	414, 719
AcoI	YGGCCR	2 cut(s)	559, 706
AcsI	RAATTY	2 cut(s)	248, 525
AfaI	GTAC	3 cut(s)	376, 494, 586
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	3 cut(s)	55, 292, 763
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	664, 696
AluBI	AGCT	2 cut(s)	158, 458
AluI	AGCT	2 cut(s)	158, 458
AoxI	GGCC	2 cut(s)	559, 706
ApeKI	GCWGC	2 cut(s)	110, 416
ApoI	RAATTY	2 cut(s)	248, 525
Asp700I	GAANNNNTTC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	677
BalI	TGGCCA	1 cut(s)	561
BbsI	GAAGAC	2 cut(s)	354, 621
BbvI	GCAGC	2 cut(s)	97, 428
BccI	CCATC	3 cut(s)	365, 650, 717
BceAI	ACGGC	1 cut(s)	721
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	142
BisI	GCNGC	2 cut(s)	111, 417
BlsI	GCNGC	2 cut(s)	112, 418
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	1 cut(s)	281
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	87, 673
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	6 cut(s)	121, 143, 179, 196, 218, 414
BpiI	GAAGAC	2 cut(s)	354, 621
BsaJI	CCNNGG	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	342, 562
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	4 cut(s)	134, 276, 289, 570
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	342, 562
BseXI	GCAGC	2 cut(s)	97, 428
BshFI	GGCC	2 cut(s)	561, 708
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	302, 588
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmFI	GGGAC	2 cut(s)	302, 588
BsnI	GGCC	2 cut(s)	561, 708
Bsp143I	GATC	4 cut(s)	32, 142, 405, 646
BspACI	CCGC	2 cut(s)	414, 719
BspANI	GGCC	2 cut(s)	561, 708
BspLI	GGNNCC	2 cut(s)	87, 673
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	342, 562
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	4 cut(s)	32, 142, 405, 646
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	296, 589, 602
BstF5I	GGATG	4 cut(s)	134, 276, 289, 570
BstKTI	GATC	4 cut(s)	35, 145, 408, 649
BstMBI	GATC	4 cut(s)	32, 142, 405, 646
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	97, 428
BstV2I	GAAGAC	2 cut(s)	354, 621
BsuRI	GGCC	2 cut(s)	561, 708
BtsCI	GGATG	4 cut(s)	134, 276, 289, 570
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	335, 529
Cfr10I	RCCGGY	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	375, 493, 585
CviAII	CATG	2 cut(s)	222, 443
CviJI	RGCY	7 cut(s)	50, 86, 158, 458, 561, 708, 759
CviKI_1	RGCY	7 cut(s)	50, 86, 158, 458, 561, 708, 759
CviQI	GTAC	3 cut(s)	375, 493, 585
DpnI	GATC	4 cut(s)	34, 144, 407, 648
DpnII	GATC	4 cut(s)	32, 142, 405, 646
DriI	GACNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	2 cut(s)	559, 706
Eam1105I	GACNNNNNGTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	219
EcoRI	GAATTC	2 cut(s)	248, 525
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	575
EcoT22I	ATGCAT	2 cut(s)	136, 211
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	2 cut(s)	225, 446
FaqI	GGGAC	2 cut(s)	302, 588
FatI	CATG	2 cut(s)	221, 442
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	111, 417
FokI	GGATG	4 cut(s)	121, 263, 296, 557
Fsp4HI	GCNGC	2 cut(s)	111, 417
GluI	GCNGC	2 cut(s)	111, 417
HaeIII	GGCC	2 cut(s)	561, 708
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	2 cut(s)	225, 446
HinfI	GANTC	6 cut(s)	55, 66, 152, 359, 410, 730
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	2 cut(s)	265, 769
Hpy188I	TCNGA	6 cut(s)	43, 181, 237, 568, 735, 747
Hpy188III	TCNNGA	1 cut(s)	697
Hpy8I	GTNNAC	2 cut(s)	265, 769
HpyAV	CCTTC	1 cut(s)	718
HpyCH4III	ACNGT	3 cut(s)	296, 589, 602
HpyCH4IV	ACGT	2 cut(s)	37, 354
HpyCH4V	TGCA	7 cut(s)	134, 171, 209, 231, 335, 479, 534
HpySE526I	ACGT	2 cut(s)	37, 354
Hsp92II	CATG	2 cut(s)	225, 446
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	32, 142, 405, 646
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	60, 131, 266, 285, 293, 323, 481, 567, 575
Lsp1109I	GCAGC	2 cut(s)	97, 428
LweI	GCATC	6 cut(s)	121, 143, 179, 196, 218, 414
MaeII	ACGT	2 cut(s)	37, 354
MalI	GATC	4 cut(s)	34, 144, 407, 648
MboI	GATC	4 cut(s)	32, 142, 405, 646
MboII	GAAGA	3 cut(s)	215, 354, 626
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	8 cut(s)	27, 115, 248, 345, 438, 525, 651, 736
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	3 cut(s)	60, 368, 739
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	6 cut(s)	14, 100, 106, 112, 693, 769
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	2 cut(s)	136, 211
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	6 cut(s)	305, 344, 380, 437, 581, 714
Msp20I	TGGCCA	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
NdeII	GATC	4 cut(s)	32, 142, 405, 646
NlaIII	CATG	2 cut(s)	225, 446
NlaIV	GGNNCC	2 cut(s)	87, 673
NsiI	ATGCAT	2 cut(s)	136, 211
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	55, 152, 410
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	112, 418
PleI	GAGTC	3 cut(s)	60, 367, 738
PpsI	GAGTC	3 cut(s)	60, 367, 738
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	87, 673
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	3 cut(s)	376, 494, 586
RsaNI	GTAC	3 cut(s)	375, 493, 585
SaqAI	TTAA	6 cut(s)	305, 344, 380, 437, 581, 714
SatI	GCNGC	2 cut(s)	111, 417
Sau3AI	GATC	4 cut(s)	32, 142, 405, 646
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	3 cut(s)	60, 368, 739
ScrFI	CCNGG	1 cut(s)	281
SfaNI	GCATC	6 cut(s)	121, 143, 179, 196, 218, 414
Sse9I	AATT	8 cut(s)	27, 115, 248, 345, 438, 525, 651, 736
SsiI	CCGC	2 cut(s)	414, 719
SspI	AATATT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	3 cut(s)	296, 589, 602
TaiI	ACGT	2 cut(s)	40, 357
TaqI	TCGA	2 cut(s)	64, 408
TasI	AATT	8 cut(s)	27, 115, 248, 345, 438, 525, 651, 736
TatI	WGTACW	2 cut(s)	492, 584
TfiI	GAWTC	3 cut(s)	55, 152, 410
Tru1I	TTAA	6 cut(s)	305, 344, 380, 437, 581, 714
Tru9I	TTAA	6 cut(s)	305, 344, 380, 437, 581, 714
TscAI	CASTG	2 cut(s)	342, 536
TseI	GCWGC	2 cut(s)	110, 416
TspDTI	ATGAA	5 cut(s)	17, 216, 261, 405, 431
TspRI	CASTG	2 cut(s)	342, 536
XapI	RAATTY	2 cut(s)	248, 525
XmnI	GAANNNNTTC	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	586
Zsp2I	ATGCAT	2 cut(s)	136, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.