AT4G17940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010290
Physical Location & Seq
Forward (+)
9965742 .. 9967013
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17940.1

Sequence Viewer

Length: 825 bp
ATGAAATCTCTATTGATGAGAACCGGTTCGATGCCGGTTCTTCAAAACCGGTTAATTTCAGGTGGTTCATCGCGGAAGATGACGCCTATCTCCAGGACCAACTCCGTCGAATCATTATCCAGCTACGGCGAGAGATTCGCCGGCGGGAAGATTTCGATCGAGGTTAAGGCTAATGTAGGGATGCGGAGGGTGTTATCGGAAAGTGATGTGATTAGATCTGAGAGAATGTTGAAAAGAGTTGGATCTAAGCCTTCGCCGGCGAGAATCCCGGAGGATGATGAAGCGGGGGAGGAAGAAATTAGGTTTGCAGATGGTTGGGGGTCTATGATCTCCGGTGGTTTACCTGTGGAGGAGAAATGTTTCACGGGTGGCGGTGTTGGTGGTGGATCTGGTTATAGCGGCGGTTATGGAAACGGAGGAGGAGGCGGTTATGAAGATAAGAGCAAGATCGGTGATTATTATCGAGAGATGTTGAGATCTAATCCTAATAATTCGCTTCTTCTGATGAATTACGGCAAGTTTTTGTATGAGGTGGAGAAAGATGCAGAGGGAGCTGAAGAGTACTATGGAAGAGCAATACTGGAGAATCCAGGAGATGGAGAAGCTTTATCCATGTATGGAAGATTGATATGGGAAACGAAGAGAGATGAGAAGAGAGCTCAAGGTTACTTTGATCAAGCTGTTAATGCTTCTCCTAATGATTGTATGGTTTTGGGATCATATGCACGTTTCATGTGGGAGGCAGAGGATGATGATGATGATGATGAAGAAGAAGAAGAAGAAGAATGGATGGCTGCATCACCACTCATGGTTTCTGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.08

Weight (kDa)

4.6

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 596
AccII CGCG 1 cut(s) 73
AciI CCGC 8 cut(s) 73, 144, 184, 284, 372, 399, 402, 426
AclWI GGATC 3 cut(s) 250, 394, 724
AcuI CTGAAG 1 cut(s) 576
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 596
AgeI ACCGGT 2 cut(s) 23, 48
AgsI TTSAA 2 cut(s) 44, 232
AjnI CCWGG 2 cut(s) 92, 589
AluBI AGCT 5 cut(s) 123, 554, 605, 659, 680
AluI AGCT 5 cut(s) 123, 554, 605, 659, 680
Alw21I GWGCWC 1 cut(s) 661
AlwI GGATC 3 cut(s) 250, 394, 724
ApeKI GCWGC 1 cut(s) 794
AsiGI ACCGGT 2 cut(s) 23, 48
Asp700I GAANNNNTTC 2 cut(s) 25, 359
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 464, 792
AvaII GGWCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 1 cut(s) 781
BccI CCATC 3 cut(s) 305, 590, 784
BceAI ACGGC 2 cut(s) 142, 529
BciT130I CCWGG 2 cut(s) 94, 591
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 816
BglII AGATCT 2 cut(s) 215, 476
BisI GCNGC 2 cut(s) 400, 795
BlsI GCNGC 2 cut(s) 401, 796
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 3 cut(s) 94, 269, 591
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmrFI CCNGG 3 cut(s) 94, 269, 591
BmsI GCATC 4 cut(s) 21, 171, 532, 806
BpmI CTGGAG 2 cut(s) 76, 602
BpuEI CTTGAG 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 269
BsaBI GATNNNNATC 2 cut(s) 155, 459
BsaHI GRCGYC 1 cut(s) 83
BsaWI WCCGGW 3 cut(s) 23, 48, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse118I RCCGGY 5 cut(s) 23, 34, 48, 140, 256
Bse1I ACTGG 1 cut(s) 585
Bse8I GATNNNNATC 2 cut(s) 155, 459
BseBI CCWGG 2 cut(s) 94, 591
BseGI GGATG 4 cut(s) 186, 280, 754, 795
BseJI GATNNNNATC 2 cut(s) 155, 459
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 3 cut(s) 365, 432, 435
BseXI GCAGC 1 cut(s) 781
Bsh1236I CGCG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 159
BshTI ACCGGT 2 cut(s) 23, 48
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 7 cut(s) 24, 35, 49, 141, 257, 269, 333
BslI CCNNNNNNNGG 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
BspACI CCGC 8 cut(s) 73, 144, 184, 284, 372, 399, 402, 426
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 820
BspPI GGATC 3 cut(s) 250, 394, 724
BspQI GCTCTTC 1 cut(s) 565
BsrFI RCCGGY 5 cut(s) 23, 34, 48, 140, 256
BsrI ACTGG 1 cut(s) 585
BssAI RCCGGY 5 cut(s) 23, 34, 48, 140, 256
BssMI GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 94, 591
Bst6I CTCTTC 4 cut(s) 552, 565, 635, 647
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 142, 258
BstDEI CTNAG 2 cut(s) 219, 246
BstF5I GGATG 4 cut(s) 186, 280, 754, 795
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 9 cut(s) 159, 218, 245, 330, 389, 450, 479, 676, 719
BstMBI GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 551, 686
BstNI CCWGG 2 cut(s) 94, 591
BstSCI CCNGG 3 cut(s) 92, 267, 589
BstSFI CTRYAG 1 cut(s) 816
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 781
BstX2I RGATCY 4 cut(s) 215, 242, 386, 476
BstYI RGATCY 4 cut(s) 215, 242, 386, 476
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 4 cut(s) 186, 280, 754, 795
Cac8I GCNNGC 2 cut(s) 142, 258
Cfr10I RCCGGY 5 cut(s) 23, 34, 48, 140, 256
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 562
CspAI ACCGGT 2 cut(s) 23, 48
CviAII CATG 3 cut(s) 613, 733, 808
CviJI RGCY 8 cut(s) 123, 170, 250, 554, 605, 659, 680, 794
CviKI_1 RGCY 8 cut(s) 123, 170, 250, 554, 605, 659, 680, 794
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 2 cut(s) 219, 246
DpnI GATC 9 cut(s) 158, 217, 244, 329, 388, 449, 478, 675, 718
DpnII GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
Eam1104I CTCTTC 4 cut(s) 552, 565, 635, 647
EarI CTCTTC 4 cut(s) 552, 565, 635, 647
Ecl136II GAGCTC 1 cut(s) 659
Eco24I GRGCYC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 576
EcoICRI GAGCTC 1 cut(s) 659
EcoRII CCWGG 2 cut(s) 92, 589
EcoT38I GRGCYC 1 cut(s) 661
FaeI CATG 3 cut(s) 616, 736, 811
FatI CATG 3 cut(s) 612, 732, 807
FauI CCCGC 2 cut(s) 137, 277
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 400, 795
FokI GGATG 4 cut(s) 193, 287, 761, 802
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 2 cut(s) 400, 795
GluI GCNGC 2 cut(s) 400, 795
GsuI CTGGAG 2 cut(s) 76, 602
HapII CCGG 7 cut(s) 24, 35, 49, 141, 257, 269, 333
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 3 cut(s) 616, 736, 811
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 4 cut(s) 110, 135, 264, 586
HpaII CCGG 7 cut(s) 24, 35, 49, 141, 257, 269, 333
HphI GGTGA 2 cut(s) 464, 792
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 3 cut(s) 199, 220, 504
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 727
HpyCH4V TGCA 5 cut(s) 308, 545, 725, 797, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 551, 686
HpyF3I CTNAG 2 cut(s) 219, 246
HpySE526I ACGT 1 cut(s) 727
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 3 cut(s) 616, 736, 811
KroI GCCGGC 2 cut(s) 140, 256
KroNI GCCGGC 2 cut(s) 142, 258
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
LguI GCTCTTC 1 cut(s) 565
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 1 cut(s) 781
LweI GCATC 4 cut(s) 21, 171, 532, 806
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 1 cut(s) 665
MalI GATC 9 cut(s) 158, 217, 244, 329, 388, 449, 478, 675, 718
MboI GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
MflI RGATCY 4 cut(s) 215, 242, 386, 476
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 4 cut(s) 54, 297, 490, 508
MmeI TCCRAC 1 cut(s) 220
MreI CGCCGGCG 2 cut(s) 140, 256
MroNI GCCGGC 2 cut(s) 140, 256
MroXI GAANNNNTTC 2 cut(s) 25, 359
MseI TTAA 3 cut(s) 53, 165, 684
MspI CCGG 7 cut(s) 24, 35, 49, 141, 257, 269, 333
MspR9I CCNGG 3 cut(s) 94, 269, 591
MvaI CCWGG 2 cut(s) 94, 591
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 551, 686
NaeI GCCGGC 2 cut(s) 142, 258
NciI CCSGG 1 cut(s) 269
NdeI CATATG 1 cut(s) 721
NdeII GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
NgoMIV GCCGGC 2 cut(s) 140, 256
NlaIII CATG 3 cut(s) 616, 736, 811
PciSI GCTCTTC 1 cut(s) 565
PdiI GCCGGC 2 cut(s) 142, 258
PdmI GAANNNNTTC 2 cut(s) 25, 359
PfeI GAWTC 4 cut(s) 110, 135, 264, 586
PflMI CCANNNNNTGG 1 cut(s) 596
PfoI TCCNGGA 3 cut(s) 92, 267, 589
PinAI ACCGGT 2 cut(s) 23, 48
PkrI GCNGC 2 cut(s) 401, 796
Ple19I CGATCG 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 661
Psp6I CCWGG 2 cut(s) 92, 589
PspGI CCWGG 2 cut(s) 92, 589
PspPI GGNCC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 820
PsuI RGATCY 4 cut(s) 215, 242, 386, 476
PvuI CGATCG 1 cut(s) 159
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
SacI GAGCTC 1 cut(s) 661
SapI GCTCTTC 1 cut(s) 565
SaqAI TTAA 3 cut(s) 53, 165, 684
SatI GCNGC 2 cut(s) 400, 795
Sau3AI GATC 9 cut(s) 156, 215, 242, 327, 386, 447, 476, 673, 716
Sau96I GGNCC 1 cut(s) 96
ScaI AGTACT 1 cut(s) 563
ScrFI CCNGG 3 cut(s) 94, 269, 591
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 4 cut(s) 21, 171, 532, 806
SfcI CTRYAG 1 cut(s) 816
SgrAI CRCCGGYG 2 cut(s) 140, 256
SinI GGWCC 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
Sse9I AATT 4 cut(s) 54, 297, 490, 508
SsiI CCGC 8 cut(s) 73, 144, 184, 284, 372, 399, 402, 426
SstI GAGCTC 1 cut(s) 661
StyD4I CCNGG 3 cut(s) 92, 267, 589
TaiI ACGT 1 cut(s) 730
TaqI TCGA 5 cut(s) 29, 108, 155, 159, 463
TasI AATT 4 cut(s) 54, 297, 490, 508
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 4 cut(s) 110, 135, 264, 586
Tru1I TTAA 3 cut(s) 53, 165, 684
Tru9I TTAA 3 cut(s) 53, 165, 684
TseI GCWGC 1 cut(s) 794
TspDTI ATGAA 7 cut(s) 17, 57, 294, 447, 521, 721, 780
TspGWI ACGGA 2 cut(s) 94, 429
Van91I CCANNNNNTGG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 96
XmnI GAANNNNTTC 2 cut(s) 25, 359
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.