Rh7DG260400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010290
Physical Location & Seq
Forward (+)
27426730 .. 27429308
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG260400.1

Sequence Viewer

Length: 801 bp
ATGAAATCATCTGCTCTGATCCGAACCGGTTCCATTGGTCTCTCCGGCTCTCCCGCCGTCTCCGGCTCTCCGAGAGTCTCCCTCTCTCGAACCGACTCGCTCTCCGGCGCCGAGAAGAGCACCGTCGCAGCCTCTCTGAGGGTTTGTCTCCACTTCGACGTCAACCGCAGCCGCGACAAGAACACTATTAGGCGAGCTGTATCCGAGAGCAACATTCTACGACCGGACTCCGGTAAAGAGAGGTATATCCCGTCCGGAAGCAGGTCCAGGTCTCCGGGAAGTGGAATTCCGGAAGAGGAGATGGGAAGCAAAAAGGTGACGATCGAAAGAGAAGAGCGGAGAAAGATGGGAGAGTATTATCAGGCGATGCTCAAGTCTAATCCGAGTGATCCTCTGCTGCTCAGAAACTACGGTCAATTCCTGCACGAGGTGGAGAAGGATATGGTGCGAGCCGAGGAGTACTATTGCAGAGCCATATTGGCGAGTCCCGGAGACGGCGAGTTGTTGTCGCTGTACGGGAAGCTGATATGGGAGAGTCAGAGGGATAAGGATCGGGCCAATTCTTACTTTAACCAGGCTGTTTCGGCTTCACCCAACAATTGGTATGTTATGCTATCTTTGGTTTTCTTTTGGTTTTACAAACAAGGCATTAGGTTACTGGATTCAAAGTCTAATGTCCTGACCACTATACCATATATAGAAACACTTGTTTCTGTTATCCTTCACCTTTGCTTTGTCTTCTTCAGTAAATTTTTTGGAATCATAGTTTCTTTTATTGGAAAATTGAAAGGAGCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.82

Weight (kDa)

9.51

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 115 - 158 6.7e-07 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 600
AccBSI CCGCTC 1 cut(s) 337
AccII CGCG 1 cut(s) 174
AccIII TCCGGA 2 cut(s) 254, 289
AciI CCGC 4 cut(s) 54, 166, 172, 337
AclWI GGATC 3 cut(s) 13, 383, 558
AcsI RAATTY 2 cut(s) 285, 749
AcuI CTGAAG 1 cut(s) 727
AcyI GRCGYC 2 cut(s) 108, 159
AdeI CACNNNGTG 1 cut(s) 430
AfaI GTAC 2 cut(s) 461, 515
AfiI CCNNNNNNNGG 7 cut(s) 138, 230, 261, 281, 427, 494, 600
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 666, 787
AjnI CCWGG 2 cut(s) 266, 573
AluBI AGCT 2 cut(s) 197, 523
AluI AGCT 2 cut(s) 197, 523
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 6 cut(s) 44, 64, 82, 152, 276, 486
AlwI GGATC 3 cut(s) 13, 383, 558
Aor13HI TCCGGA 2 cut(s) 254, 289
AoxI GGCC 1 cut(s) 555
ApeKI GCWGC 3 cut(s) 128, 168, 397
ApoI RAATTY 2 cut(s) 285, 749
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 264, 555
AsuC2I CCSGG 2 cut(s) 276, 489
AsuHPI GGTGA 3 cut(s) 328, 582, 716
AvaII GGWCC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 107
BauI CACGAG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 730
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 3 cut(s) 140, 180, 384
BccI CCATC 2 cut(s) 295, 340
BceAI ACGGC 2 cut(s) 41, 511
BciT130I CCWGG 2 cut(s) 268, 575
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 2 cut(s) 276, 489
BcoDI GTCTC 6 cut(s) 44, 64, 82, 152, 276, 486
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 252
BfuI GTATCC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 4 cut(s) 129, 169, 172, 398
BlsI GCNGC 4 cut(s) 130, 170, 173, 399
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 4 cut(s) 268, 276, 489, 575
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 264, 555
BmiI GGNNCC 2 cut(s) 31, 109
BmrFI CCNGG 4 cut(s) 268, 276, 489, 575
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 730
BplI GAGNNNNNCTC 4 cut(s) 66, 98, 376, 408
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 276, 489
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 2 cut(s) 108, 159
BsaI GGTCTC 2 cut(s) 44, 276
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 5 cut(s) 26, 223, 230, 254, 289
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 230, 261, 281, 427, 494, 600
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 663
Bse8I GATNNNNATC 1 cut(s) 549
BseAI TCCGGA 2 cut(s) 254, 289
BseBI CCWGG 2 cut(s) 268, 575
BseDI CCNNGG 1 cut(s) 453
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 7 cut(s) 138, 230, 261, 281, 427, 494, 600
BseMII CTCAG 2 cut(s) 128, 415
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 2 cut(s) 311, 470
BseXI GCAGC 3 cut(s) 140, 180, 384
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 2 cut(s) 224, 324
BshFI GGCC 1 cut(s) 557
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 224, 324
BsiHKAI GWGCWC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 7 cut(s) 138, 230, 261, 281, 427, 494, 600
BsmAI GTCTC 6 cut(s) 44, 64, 82, 152, 276, 486
BsmBI CGTCTC 2 cut(s) 64, 486
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 1 cut(s) 557
Bso31I GGTCTC 2 cut(s) 44, 276
Bsp1286I GDGCHC 1 cut(s) 122
Bsp13I TCCGGA 2 cut(s) 254, 289
Bsp143I GATC 4 cut(s) 18, 321, 388, 550
BspACI CCGC 4 cut(s) 54, 166, 172, 337
BspANI GGCC 1 cut(s) 557
BspCNI CTCAG 2 cut(s) 129, 414
BspEI TCCGGA 2 cut(s) 254, 289
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 31, 109
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 13, 383, 558
BspQI GCTCTTC 2 cut(s) 110, 327
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 2 cut(s) 44, 276
BsrBI CCGCTC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 4 cut(s) 18, 321, 388, 550
BssNI GRCGYC 2 cut(s) 108, 159
BssSI CACGAG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 425
Bst2UI CCWGG 2 cut(s) 268, 575
Bst4CI ACNGT 2 cut(s) 124, 413
Bst6I CTCTTC 3 cut(s) 110, 288, 327
BstACI GRCGYC 2 cut(s) 108, 159
BstC8I GCNNGC 2 cut(s) 195, 450
BstDEI CTNAG 2 cut(s) 137, 401
BstENI CCTNNNNNAGG 2 cut(s) 136, 425
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 4 cut(s) 21, 324, 391, 553
BstMAI GTCTC 6 cut(s) 44, 64, 82, 152, 276, 486
BstMBI GATC 4 cut(s) 18, 321, 388, 550
BstMCI CGRYCG 2 cut(s) 224, 324
BstMWI GCNNNNNNNGC 2 cut(s) 479, 584
BstNI CCWGG 2 cut(s) 268, 575
BstSCI CCNGG 4 cut(s) 266, 274, 487, 573
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 140, 180, 384
BstV2I GAAGAC 1 cut(s) 730
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 557
BtgZI GCGATG 1 cut(s) 380
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 195, 450
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 264, 555
Csp6I GTAC 2 cut(s) 460, 514
CspAI ACCGGT 1 cut(s) 26
CviQI GTAC 2 cut(s) 460, 514
DdeI CTNAG 2 cut(s) 137, 401
DinI GGCGCC 1 cut(s) 109
DpnI GATC 4 cut(s) 20, 323, 390, 552
DpnII GATC 4 cut(s) 18, 321, 388, 550
DraIII CACNNNGTG 1 cut(s) 430
Eam1104I CTCTTC 3 cut(s) 110, 288, 327
EarI CTCTTC 3 cut(s) 110, 288, 327
Eco31I GGTCTC 2 cut(s) 44, 276
Eco47I GGWCC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 727
EcoNI CCTNNNNNAGG 2 cut(s) 136, 425
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 266, 573
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
Esp3I CGTCTC 2 cut(s) 64, 486
FaqI GGGAC 1 cut(s) 471
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 129, 169, 172, 398
Fsp4HI GCNGC 4 cut(s) 129, 169, 172, 398
GlaI GCGC 1 cut(s) 109
GluI GCNGC 4 cut(s) 129, 169, 172, 398
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 557
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 2 cut(s) 108, 159
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 7 cut(s) 75, 95, 227, 484, 535, 662, 759
HphI GGTGA 3 cut(s) 328, 582, 716
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 8 cut(s) 18, 23, 72, 138, 205, 384, 404, 540
Hpy188III TCNNGA 4 cut(s) 87, 255, 290, 679
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 128, 161
HpyAV CCTTC 2 cut(s) 430, 731
HpyCH4III ACNGT 2 cut(s) 124, 413
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 424, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 584
HpyF3I CTNAG 2 cut(s) 137, 401
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 2 cut(s) 108, 159
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
Kpn2I TCCGGA 2 cut(s) 254, 289
Kzo9I GATC 4 cut(s) 18, 321, 388, 550
LguI GCTCTTC 2 cut(s) 110, 327
LmnI GCTCC 1 cut(s) 791
Lsp1109I GCAGC 3 cut(s) 140, 180, 384
LweI GCATC 1 cut(s) 357
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 316, 654
MalI GATC 4 cut(s) 20, 323, 390, 552
MbiI CCGCTC 1 cut(s) 337
MboI GATC 4 cut(s) 18, 321, 388, 550
MboII GAAGA 5 cut(s) 127, 305, 344, 730, 733
MfeI CAATTG 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 6 cut(s) 285, 416, 559, 598, 749, 782
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 5 cut(s) 84, 89, 221, 493, 544
MnlI CCTC 9 cut(s) 92, 132, 142, 234, 289, 402, 421, 448, 534
MroI TCCGGA 2 cut(s) 254, 289
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 1 cut(s) 570
MspR9I CCNGG 4 cut(s) 268, 276, 489, 575
MunI CAATTG 1 cut(s) 598
MvaI CCWGG 2 cut(s) 268, 575
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 479, 584
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 2 cut(s) 276, 489
NdeII GATC 4 cut(s) 18, 321, 388, 550
NlaIV GGNNCC 2 cut(s) 31, 109
NmeAIII GCCGAG 2 cut(s) 136, 478
NmuCI GTSAC 1 cut(s) 316
PciSI GCTCTTC 2 cut(s) 110, 327
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 662, 759
PflMI CCANNNNNTGG 1 cut(s) 600
PfoI TCCNGGA 2 cut(s) 274, 487
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 4 cut(s) 130, 170, 173, 399
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 5 cut(s) 83, 89, 221, 492, 543
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 5 cut(s) 83, 89, 221, 492, 543
Psp6I CCWGG 2 cut(s) 266, 573
PspGI CCWGG 2 cut(s) 266, 573
PspN4I GGNNCC 2 cut(s) 31, 109
PspPI GGNCC 2 cut(s) 264, 555
PvuI CGATCG 1 cut(s) 324
RsaI GTAC 2 cut(s) 461, 515
RsaNI GTAC 2 cut(s) 460, 514
SapI GCTCTTC 2 cut(s) 110, 327
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 4 cut(s) 129, 169, 172, 398
Sau3AI GATC 4 cut(s) 18, 321, 388, 550
Sau96I GGNCC 2 cut(s) 264, 555
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 5 cut(s) 84, 89, 221, 493, 544
ScrFI CCNGG 4 cut(s) 268, 276, 489, 575
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 109
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 6 cut(s) 285, 416, 559, 598, 749, 782
SsiI CCGC 4 cut(s) 54, 166, 172, 337
SspDI GGCGCC 1 cut(s) 107
StyD4I CCNGG 4 cut(s) 266, 274, 487, 573
TaaI ACNGT 2 cut(s) 124, 413
TaiI ACGT 1 cut(s) 162
TaqI TCGA 3 cut(s) 88, 156, 324
TasI AATT 6 cut(s) 285, 416, 559, 598, 749, 782
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 662, 759
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 128, 168, 397
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 264
XagI CCTNNNNNAGG 2 cut(s) 136, 425
XapI RAATTY 2 cut(s) 285, 749
XmnI GAANNNNTTC 1 cut(s) 28
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.