Rh7BG247900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010290
Physical Location & Seq
Forward (+)
22164494 .. 22175760
11267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG247900.1

Sequence Viewer

Length: 672 bp
ATGAAATTATCTGTTCTCATCCGAACCGGTTCCATTGGTCTCTCCGGCTCTCCCAGAGTCTCCCTCTCGCGAACCGACTCGCTTTCCGGCGTCTTGTCCGGCGAGAAGATCAGCAACGTCGCCACGTCTCCGAGGATTTGCCTCCACTTCGACGTCAACCGCAGCCGCGACAAGGACACTATTCGGCGAGCTGTATCCGAGAGCAACATTCTACGATCGGACTCCGGTGAAGCGAGGTATATCCCGTCCGGAAGCAGGTCGCCGGAAAGTGGGATTCCGGAAGAGGAGATGGAAAGCAAAACGGTGACGATCGAAAGAGAAGAGCGGAGAAAGATGGTAGAGTATTATCAGGAGATGCTCAAGTCTAATCCGAGTGATCCTCTGCTGCTCAGAAACTACGGTCAATTCCTGCACGAGGTGGAGAAGGATATGGTGCGAGCTGAGGAGTGCTATTGCAGAGCCATATTGGCGAGTCCCGGAGACGGCGAGTTGTTGTCGCTGTACGCGAAGCTGATATGGGAGAGTCAGAGGGATAAGGATCGGGCCAATTCTTACTTTGACCAGGCTGTTTCGGCTTCACCCAACAATTGGTATGTTATATGCTATCTTTGGTTTTCTTTTGGTTTTACAAACAAGGCATTAGGTTACTGGATTCAAAGTCTAATGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.32

Weight (kDa)

6.21

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 111 - 154 1.1e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 588
AccBSI CCGCTC 1 cut(s) 325
AccII CGCG 3 cut(s) 70, 168, 506
AccIII TCCGGA 2 cut(s) 248, 277
AciI CCGC 3 cut(s) 160, 166, 325
AclWI GGATC 2 cut(s) 371, 546
AcyI GRCGYC 2 cut(s) 90, 153
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 6 cut(s) 172, 255, 269, 415, 482, 588
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 656
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 3 cut(s) 191, 440, 511
AluI AGCT 3 cut(s) 191, 440, 511
Alw26I GTCTC 4 cut(s) 44, 64, 132, 474
AlwI GGATC 2 cut(s) 371, 546
Aor13HI TCCGGA 2 cut(s) 248, 277
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 2 cut(s) 162, 385
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 543
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 239, 316, 570
BauI CACGAG 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 174, 372
BccI CCATC 2 cut(s) 283, 328
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 563
BciVI GTATCC 1 cut(s) 205
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 4 cut(s) 44, 64, 132, 474
BfuAI ACCTGC 1 cut(s) 246
BfuI GTATCC 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 3 cut(s) 163, 166, 386
BlsI GCNGC 3 cut(s) 164, 167, 387
Bme1390I CCNGG 2 cut(s) 477, 563
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 477, 563
BmsI GCATC 1 cut(s) 345
BplI GAGNNNNNCTC 4 cut(s) 48, 80, 364, 396
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 2 cut(s) 90, 153
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 4 cut(s) 26, 224, 248, 277
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 255, 269, 415, 482, 588
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 653
Bse8I GATNNNNATC 1 cut(s) 537
BseAI TCCGGA 2 cut(s) 248, 277
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 6 cut(s) 172, 255, 269, 415, 482, 588
BseMII CTCAG 2 cut(s) 403, 432
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 299, 458
BseXI GCAGC 2 cut(s) 174, 372
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 3 cut(s) 70, 168, 506
Bsh1285I CGRYCG 2 cut(s) 218, 312
BshFI GGCC 1 cut(s) 545
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 218, 312
BsiSI CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 6 cut(s) 172, 255, 269, 415, 482, 588
BsmAI GTCTC 4 cut(s) 44, 64, 132, 474
BsmBI CGTCTC 2 cut(s) 132, 474
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 1 cut(s) 545
Bso31I GGTCTC 1 cut(s) 44
Bsp13I TCCGGA 2 cut(s) 248, 277
Bsp143I GATC 5 cut(s) 108, 215, 309, 376, 538
Bsp68I TCGCGA 1 cut(s) 70
BspACI CCGC 3 cut(s) 160, 166, 325
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 2 cut(s) 402, 433
BspEI TCCGGA 2 cut(s) 248, 277
BspFNI CGCG 3 cut(s) 70, 168, 506
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 2 cut(s) 371, 546
BspQI GCTCTTC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 5 cut(s) 108, 215, 309, 376, 538
BssNI GRCGYC 2 cut(s) 90, 153
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 304, 401
Bst6I CTCTTC 2 cut(s) 276, 315
BstACI GRCGYC 2 cut(s) 90, 153
BstC8I GCNNGC 2 cut(s) 189, 438
BstDEI CTNAG 2 cut(s) 389, 441
BstENI CCTNNNNNAGG 1 cut(s) 413
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 3 cut(s) 70, 168, 506
BstKTI GATC 5 cut(s) 111, 218, 312, 379, 541
BstMAI GTCTC 4 cut(s) 44, 64, 132, 474
BstMBI GATC 5 cut(s) 108, 215, 309, 376, 538
BstMCI CGRYCG 2 cut(s) 218, 312
BstMWI GCNNNNNNNGC 2 cut(s) 467, 572
BstNI CCWGG 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 475, 561
BstUI CGCG 3 cut(s) 70, 168, 506
BstV1I GCAGC 2 cut(s) 174, 372
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 545
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 18
BtuMI TCGCGA 1 cut(s) 70
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 189, 438
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 543
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 502
CspAI ACCGGT 1 cut(s) 26
CviJI RGCY 9 cut(s) 48, 165, 191, 440, 461, 511, 545, 566, 575
CviKI_1 RGCY 9 cut(s) 48, 165, 191, 440, 461, 511, 545, 566, 575
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 389, 441
DpnI GATC 5 cut(s) 110, 217, 311, 378, 540
DpnII GATC 5 cut(s) 108, 215, 309, 376, 538
DraIII CACNNNGTG 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 276, 315
EarI CTCTTC 2 cut(s) 276, 315
Eco31I GGTCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 561
Esp3I CGTCTC 2 cut(s) 132, 474
FaiI YATR 7 cut(s) 240, 431, 464, 517, 594, 599, 601
FaqI GGGAC 1 cut(s) 459
Fnu4HI GCNGC 3 cut(s) 163, 166, 386
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 3 cut(s) 163, 166, 386
GluI GCNGC 3 cut(s) 163, 166, 386
HaeIII GGCC 1 cut(s) 545
HapII CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
HgaI GACGC 1 cut(s) 79
Hin1I GRCGYC 2 cut(s) 90, 153
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 7 cut(s) 57, 77, 221, 274, 472, 523, 652
HpaII CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
HphI GGTGA 3 cut(s) 239, 316, 570
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 7 cut(s) 23, 132, 199, 220, 372, 392, 528
Hpy188III TCNNGA 5 cut(s) 69, 249, 278, 350, 669
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 2 cut(s) 122, 155
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 2 cut(s) 304, 401
HpyCH4IV ACGT 3 cut(s) 117, 125, 153
HpyCH4V TGCA 2 cut(s) 412, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 572
HpyF3I CTNAG 2 cut(s) 389, 441
HpySE526I ACGT 3 cut(s) 117, 125, 153
Hsp92I GRCGYC 2 cut(s) 90, 153
Kpn2I TCCGGA 2 cut(s) 248, 277
Kzo9I GATC 5 cut(s) 108, 215, 309, 376, 538
LguI GCTCTTC 1 cut(s) 315
Lsp1109I GCAGC 2 cut(s) 174, 372
LweI GCATC 1 cut(s) 345
MaeII ACGT 3 cut(s) 117, 125, 153
MaeIII GTNAC 2 cut(s) 304, 644
MalI GATC 5 cut(s) 110, 217, 311, 378, 540
MbiI CCGCTC 1 cut(s) 325
MboI GATC 5 cut(s) 108, 215, 309, 376, 538
MboII GAAGA 3 cut(s) 118, 293, 332
MfeI CAATTG 1 cut(s) 586
MluCI AATT 4 cut(s) 5, 404, 547, 586
MlyI GAGTC 5 cut(s) 66, 71, 215, 481, 532
MnlI CCTC 9 cut(s) 74, 126, 152, 228, 277, 390, 409, 436, 522
MroI TCCGGA 2 cut(s) 248, 277
MroXI GAANNNNTTC 1 cut(s) 28
MspI CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
MspR9I CCNGG 2 cut(s) 477, 563
MunI CAATTG 1 cut(s) 586
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 3 cut(s) 70, 168, 506
MwoI GCNNNNNNNGC 2 cut(s) 467, 572
NciI CCSGG 1 cut(s) 477
NdeII GATC 5 cut(s) 108, 215, 309, 376, 538
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 274, 652
PflMI CCANNNNNTGG 1 cut(s) 588
PfoI TCCNGGA 1 cut(s) 475
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 3 cut(s) 164, 167, 387
Ple19I CGATCG 2 cut(s) 218, 312
PleI GAGTC 5 cut(s) 65, 71, 215, 480, 531
PpsI GAGTC 5 cut(s) 65, 71, 215, 480, 531
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 543
PvuI CGATCG 2 cut(s) 218, 312
RruI TCGCGA 1 cut(s) 70
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SapI GCTCTTC 1 cut(s) 315
SatI GCNGC 3 cut(s) 163, 166, 386
Sau3AI GATC 5 cut(s) 108, 215, 309, 376, 538
Sau96I GGNCC 1 cut(s) 543
SchI GAGTC 5 cut(s) 66, 71, 215, 481, 532
ScrFI CCNGG 2 cut(s) 477, 563
SfaNI GCATC 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 5, 404, 547, 586
SsiI CCGC 3 cut(s) 160, 166, 325
StyD4I CCNGG 2 cut(s) 475, 561
TaaI ACNGT 2 cut(s) 304, 401
TaiI ACGT 3 cut(s) 120, 128, 156
TaqI TCGA 2 cut(s) 150, 312
TasI AATT 4 cut(s) 5, 404, 547, 586
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 2 cut(s) 274, 652
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 162, 385
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 588
XagI CCTNNNNNAGG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 28
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.