Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010290

Physical Location & Seq

Genomic Coordinates Forward (+)

3812554 .. 3814069

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATCCGAACCGGTTCTTTTGCGCTCCGGTCACCGGCCGTTTCCGGCTCGCCTAGAGTGTCCCTAGCCCGGAACGACTCGCTCTCGAGCGTTTTCTCCGGCGAGAGGAGCACCGTCGGATCTCCCATGATCTCCCTGCATTTCGACGTCAATCGCCGCCGAGATAAGATGATCCGGAGATCTCTGTCGGAGAGCGACGTTCTGCAATCGGCGTCCGACGGATTTCGAGCACTGTCGGCGAGTTACGCCGGTAAATTGGCGGGAAGTGGAATTTCGACGGAGAAGCTGGTTCCTGGCGGCGGCGATTGCGGAGGGAATACTGTAACGGTGCAGGAAGGCGAGCAGAGGAAGATCGGAGCGTATTATCAAGAGATGCTGAAGTCAAACCCCGGCGATCCGTTGCTGCTGAGGAACTACGGGAAATTCTTGCACGAGGTGGAGAAGGATGCGGTGGGGGCGGAGGAGTGCTATTGTAGGGCGATATTGGAGAGTCCGGGAGACGGTGATTTGTTGTCGCTCTACGGAAAGCTAATCTGGGAGACGCAGAGAGATGAGGAACGGGCTAAATCTTACTTTGATCAGGCTGTTTCTGCCTCCCCTGACGATTGCATGGTGTTGGGGTCCTTCGCTAGCTTCATGTGGGAAGCTGAGGAAGACGAAGACGAAGACGACAATGAAGAAATCAACATTGACGACGGAACTCAAGCCTCATCTGTGCCGGCTCTGGTTCCTGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.69

Weight (kDa)

4.56

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17940
fragaria_vesca	FvH4_5g22450 FvH4_5g22450 FvH4_6g30360
malus_domestica	MD06G1036900.v1.1
prunus_persica	Prupe.5G032400_v2.0.a1
pyrus_communis	pycom06g03020
rosa_chinensis	RchiOBHm_Chr7g0210241
rosa_laevigata	RLG00000003056
rosa_multiflora	Rmu_sc0006908.1_g000004 Rmu_sc0017046.1_g000010 Rmu_sc0027080.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248530
rosa_rugosa	Rorug07G0119900
rosa_samantha	Rh1AG349600 Rh7AG252800 Rh7BG247900 Rh7CG269800 Rh7DG260400
rosa_wichuraiana	Rw7G021500 Rw7G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	7 cut(s)	157, 260, 297, 300, 309, 449, 458
AclWI	GGATC	3 cut(s)	127, 166, 389
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	270, 422
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	2 cut(s)	147, 212
AdeI	CACNNNGTG	1 cut(s)	436
AfiI	CCNNNNNNNGG	5 cut(s)	34, 69, 105, 299, 500
AgeI	ACCGGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	286, 529, 633, 647
AluI	AGCT	4 cut(s)	286, 529, 633, 647
Alw21I	GWGCWC	2 cut(s)	113, 232
Alw26I	GTCTC	2 cut(s)	492, 533
AlwI	GGATC	3 cut(s)	127, 166, 389
Ama87I	CYCGRG	1 cut(s)	85
Aor13HI	TCCGGA	1 cut(s)	174
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	270, 422
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	621
AsuC2I	CCSGG	3 cut(s)	70, 390, 495
AsuHPI	GGTGA	2 cut(s)	24, 515
AsuNHI	GCTAGC	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	621
BauI	CACGAG	1 cut(s)	431
BbsI	GAAGAC	3 cut(s)	660, 666, 672
Bbv12I	GWGCWC	2 cut(s)	113, 232
BbvCI	CCTCAGC	2 cut(s)	407, 648
BbvI	GCAGC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	3 cut(s)	70, 390, 495
BcoDI	GTCTC	2 cut(s)	492, 533
BfaI	CTAG	3 cut(s)	54, 65, 630
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	4 cut(s)	157, 298, 301, 404
BlsI	GCNGC	4 cut(s)	158, 299, 302, 405
Bme1390I	CCNGG	4 cut(s)	70, 294, 390, 495
Bme18I	GGWCC	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	3 cut(s)	291, 622, 729
BmrFI	CCNGG	4 cut(s)	70, 294, 390, 495
BmsI	GCATC	2 cut(s)	363, 436
BmtI	GCTAGC	1 cut(s)	633
BpiI	GAAGAC	3 cut(s)	660, 666, 672
Bpu10I	CCTNAGC	2 cut(s)	407, 648
BpuEI	CTTGAG	1 cut(s)	687
BpuMI	CCSGG	3 cut(s)	70, 390, 495
BsaHI	GRCGYC	2 cut(s)	147, 212
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	3 cut(s)	11, 27, 174
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 69, 105, 299, 500
Bse118I	RCCGGY	4 cut(s)	11, 34, 248, 718
BseAI	TCCGGA	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	5 cut(s)	34, 69, 105, 299, 500
BseMII	CTCAG	2 cut(s)	398, 639
BseRI	GAGGAG	2 cut(s)	121, 476
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	390
BsgI	GTGCAG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	113, 232
BsiHKCI	CYCGRG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	5 cut(s)	34, 69, 105, 299, 500
BsmAI	GTCTC	2 cut(s)	492, 533
BsmBI	CGTCTC	2 cut(s)	492, 533
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	113, 232
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
BspACI	CCGC	7 cut(s)	157, 260, 297, 300, 309, 449, 458
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	399, 640
BspEI	TCCGGA	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	291, 622, 729
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	3 cut(s)	127, 166, 389
BsrFI	RCCGGY	4 cut(s)	11, 34, 248, 718
BssAI	RCCGGY	4 cut(s)	11, 34, 248, 718
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
BssNI	GRCGYC	2 cut(s)	147, 212
BssSI	CACGAG	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	5 cut(s)	115, 234, 322, 328, 503
BstACI	GRCGYC	2 cut(s)	147, 212
BstC8I	GCNNGC	4 cut(s)	50, 341, 631, 720
BstDEI	CTNAG	2 cut(s)	407, 648
BstEII	GGTNACC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	8 cut(s)	6, 122, 132, 174, 182, 354, 397, 580
BstMAI	GTCTC	2 cut(s)	492, 533
BstMBI	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 236, 245, 306, 455, 590
BstNI	CCWGG	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	30
BstSCI	CCNGG	4 cut(s)	68, 292, 388, 493
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	3 cut(s)	660, 666, 672
BstX2I	RGATCY	2 cut(s)	119, 179
BstYI	RGATCY	2 cut(s)	119, 179
BstZI	CGGCCG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	4 cut(s)	50, 341, 631, 720
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	4 cut(s)	11, 34, 248, 718
Cfr13I	GGNCC	1 cut(s)	621
CseI	GACGC	2 cut(s)	201, 550
CspAI	ACCGGT	1 cut(s)	11
CviAII	CATG	3 cut(s)	127, 610, 637
DdeI	CTNAG	2 cut(s)	407, 648
DpnI	GATC	8 cut(s)	5, 121, 131, 173, 181, 353, 396, 579
DpnII	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
DraIII	CACNNNGTG	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	473
EclXI	CGGCCG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	621
Eco52I	CGGCCG	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	621
EcoO65I	GGTNACC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	292
Esp3I	CGTCTC	2 cut(s)	492, 533
FaeI	CATG	3 cut(s)	130, 613, 640
FaiI	YATR	3 cut(s)	128, 611, 638
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	126, 609, 636
FauI	CCCGC	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	4 cut(s)	157, 298, 301, 404
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	157, 298, 301, 404
FspBI	CTAG	3 cut(s)	54, 65, 630
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	4 cut(s)	157, 298, 301, 404
HaeIII	GGCC	1 cut(s)	38
HgaI	GACGC	2 cut(s)	201, 550
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	2 cut(s)	147, 212
Hin1II	CATG	3 cut(s)	130, 613, 640
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	77, 490
HphI	GGTGA	2 cut(s)	24, 515
Hpy188I	TCNGA	5 cut(s)	8, 119, 190, 217, 356
Hpy188III	TCNNGA	3 cut(s)	85, 175, 368
Hpy99I	CGWCG	6 cut(s)	119, 149, 200, 221, 280, 698
HpyAV	CCTTC	3 cut(s)	329, 436, 634
HpyCH4III	ACNGT	5 cut(s)	115, 234, 322, 328, 503
HpyCH4IV	ACGT	2 cut(s)	147, 198
HpyCH4V	TGCA	6 cut(s)	139, 205, 331, 430, 609, 734
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 236, 245, 306, 455, 590
HpyF3I	CTNAG	2 cut(s)	407, 648
HpySE526I	ACGT	2 cut(s)	147, 198
Hsp92I	GRCGYC	2 cut(s)	147, 212
Hsp92II	CATG	3 cut(s)	130, 613, 640
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	718
KroNI	GCCGGC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
LmnI	GCTCC	3 cut(s)	30, 108, 356
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	363, 436
MaeI	CTAG	3 cut(s)	54, 65, 630
MaeII	ACGT	2 cut(s)	147, 198
MaeIII	GTNAC	3 cut(s)	30, 242, 322
MalI	GATC	8 cut(s)	5, 121, 131, 173, 181, 353, 396, 579
MboI	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
MboII	GAAGA	5 cut(s)	361, 665, 671, 677, 689
MflI	RGATCY	2 cut(s)	119, 179
MhlI	GDGCHC	2 cut(s)	113, 232
MluCI	AATT	3 cut(s)	254, 270, 422
MlyI	GAGTC	2 cut(s)	71, 499
MmeI	TCCRAC	3 cut(s)	97, 168, 240
MroI	TCCGGA	1 cut(s)	174
MroNI	GCCGGC	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	13
MseI	TTAA	1 cut(s)	739
MspR9I	CCNGG	4 cut(s)	70, 294, 390, 495
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	108, 236, 245, 306, 455, 590
NaeI	GCCGGC	1 cut(s)	720
NciI	CCSGG	3 cut(s)	70, 390, 495
NdeII	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
NgoMIV	GCCGGC	1 cut(s)	718
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	3 cut(s)	130, 613, 640
NlaIV	GGNNCC	3 cut(s)	291, 622, 729
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	720
PdmI	GAANNNNTTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	158, 299, 302, 405
PleI	GAGTC	2 cut(s)	71, 498
PpsI	GAGTC	2 cut(s)	71, 498
PpuMI	RGGWCCY	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	291, 622, 729
PspPI	GGNCC	1 cut(s)	621
PspPPI	RGGWCCY	1 cut(s)	621
PsuI	RGATCY	2 cut(s)	119, 179
SaqAI	TTAA	1 cut(s)	739
SatI	GCNGC	4 cut(s)	157, 298, 301, 404
Sau3AI	GATC	8 cut(s)	3, 119, 129, 171, 179, 351, 394, 577
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	2 cut(s)	71, 499
ScrFI	CCNGG	4 cut(s)	70, 294, 390, 495
SduI	GDGCHC	2 cut(s)	113, 232
SetI	ASST	7 cut(s)	150, 201, 288, 438, 531, 635, 649
SfaNI	GCATC	2 cut(s)	363, 436
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	621
SlaI	CTCGAG	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	85, 702
SmoI	CTYRAG	2 cut(s)	85, 702
Sse9I	AATT	3 cut(s)	254, 270, 422
SsiI	CCGC	7 cut(s)	157, 260, 297, 300, 309, 449, 458
SspMI	CTAG	3 cut(s)	54, 65, 630
StyD4I	CCNGG	4 cut(s)	68, 292, 388, 493
TaaI	ACNGT	5 cut(s)	115, 234, 322, 328, 503
TaiI	ACGT	2 cut(s)	150, 201
TaqI	TCGA	4 cut(s)	86, 144, 226, 275
TasI	AATT	3 cut(s)	254, 270, 422
TauI	GCSGC	3 cut(s)	159, 300, 303
Tru1I	TTAA	1 cut(s)	739
Tru9I	TTAA	1 cut(s)	739
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	625, 690
TspGWI	ACGGA	5 cut(s)	234, 293, 387, 537, 711
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	2 cut(s)	270, 422
XhoI	CTCGAG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	13
XspI	CTAG	3 cut(s)	54, 65, 630
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.