FvH4_6g30360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010290
Physical Location & Seq
Reverse (-)
23434924 .. 23437777
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30360.t1

Sequence Viewer

Length: 432 bp
ATGAAATCATCTGTTCTGATCCGAACCGGTTCCATCGACCTTGCTGTCTCCGGCTCTCCCAAGGTCTCCATCTCCCGCAACAACTTGCTCTCCGTCTTCTCGTCGGGGAAGACCACCGCCGCCGCCGCAGCGTCTCTTAGGATCTGGCTCCAGTTCGACGTCATCGGGAAAACAACTGCAAAATCATCATTGCCTCTATCTTCTAAGGATGAACCCAGAGCTTCATTGTTTATATGGGGTTTTCCAGACATTGATTTACGTGAGAATTTTCAAGAACCCATACCATTCTTCTTCTCTCTTCTCTATGCCCACCTCTTCAACGCCACCACCCTCGTTGCCCTCAACCTCCGCTACCTCGACTTGTCCTTAAATCTCCTCAATGGTTCCCTCTCGGAGTCTCTCACCGAGGTCGACTTGGAAATCGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.61

Weight (kDa)

6.57

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AatII GACGTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 411
AciI CCGC 6 cut(s) 76, 117, 120, 123, 126, 349
AclWI GGATC 2 cut(s) 13, 149
AcsI RAATTY 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 159
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 272, 319
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 4 cut(s) 52, 70, 138, 402
AlwI GGATC 2 cut(s) 13, 149
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 265
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 88, 116
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 41, 77
BcoDI GTCTC 4 cut(s) 52, 70, 138, 402
BisI GCNGC 4 cut(s) 120, 123, 126, 129
BlsI GCNGC 4 cut(s) 121, 124, 127, 130
BmiI GGNNCC 3 cut(s) 31, 149, 385
BpiI GAAGAC 2 cut(s) 88, 116
BpmI CTGGAG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 60, 405
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 60, 405
BseGI GGATG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 140
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 2 cut(s) 27, 51
BsmAI GTCTC 4 cut(s) 52, 70, 138, 402
BsmBI CGTCTC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 18, 141
BspACI CCGC 6 cut(s) 76, 117, 120, 123, 126, 349
BspLI GGNNCC 3 cut(s) 31, 149, 385
BspPI GGATC 2 cut(s) 13, 149
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 60, 405
BssMI GATC 2 cut(s) 18, 141
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 303, 320
BstACI GRCGYC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 137, 204
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 21, 144
BstMAI GTCTC 4 cut(s) 52, 70, 138, 402
BstMBI GATC 2 cut(s) 18, 141
BstMWI GCNNNNNNNGC 2 cut(s) 125, 128
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 2 cut(s) 88, 116
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BtsCI GGATG 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 26
CseI GACGC 1 cut(s) 120
CspAI ACCGGT 1 cut(s) 26
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviJI RGCY 3 cut(s) 54, 148, 221
CviKI_1 RGCY 3 cut(s) 54, 148, 221
DdeI CTNAG 2 cut(s) 137, 204
DpnI GATC 2 cut(s) 20, 143
DpnII GATC 2 cut(s) 18, 141
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 303, 320
EarI CTCTTC 2 cut(s) 303, 320
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 138
FaiI YATR 4 cut(s) 233, 235, 281, 306
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 120, 123, 126, 129
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 4 cut(s) 120, 123, 126, 129
GluI GCNGC 4 cut(s) 120, 123, 126, 129
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 2 cut(s) 27, 51
HgaI GACGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 1 cut(s) 395
HpaII CCGG 2 cut(s) 27, 51
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 3 cut(s) 18, 23, 394
Hpy188III TCNNGA 4 cut(s) 166, 245, 272, 424
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 2 cut(s) 106, 161
HpyCH4IV ACGT 2 cut(s) 159, 259
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 128
HpyF3I CTNAG 2 cut(s) 137, 204
HpySE526I ACGT 2 cut(s) 159, 259
Hsp92I GRCGYC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 18, 141
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 6 cut(s) 40, 64, 130, 164, 229, 258
Lsp1109I GCAGC 1 cut(s) 140
MaeII ACGT 2 cut(s) 159, 259
MalI GATC 2 cut(s) 20, 143
MboI GATC 2 cut(s) 18, 141
MboII GAAGA 7 cut(s) 88, 121, 192, 280, 283, 290, 307
MflI RGATCY 1 cut(s) 141
MluCI AATT 1 cut(s) 265
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 9 cut(s) 204, 323, 341, 350, 356, 365, 386, 398, 400
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 1 cut(s) 368
MspI CCGG 2 cut(s) 27, 51
MwoI GCNNNNNNNGC 2 cut(s) 125, 128
NdeII GATC 2 cut(s) 18, 141
NlaIV GGNNCC 3 cut(s) 31, 149, 385
PdmI GAANNNNTTC 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 4 cut(s) 121, 124, 127, 130
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 31, 149, 385
PsuI RGATCY 1 cut(s) 141
SalI GTCGAC 1 cut(s) 410
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 4 cut(s) 120, 123, 126, 129
Sau3AI GATC 2 cut(s) 18, 141
SchI GAGTC 1 cut(s) 404
SetI ASST 9 cut(s) 42, 66, 162, 223, 262, 315, 348, 357, 411
Sse9I AATT 1 cut(s) 265
SsiI CCGC 6 cut(s) 76, 117, 120, 123, 126, 349
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 2 cut(s) 162, 262
TaqI TCGA 4 cut(s) 36, 156, 357, 411
TasI AATT 1 cut(s) 265
TauI GCSGC 3 cut(s) 122, 125, 128
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 17, 213, 225
TspGWI ACGGA 1 cut(s) 82
XapI RAATTY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 28
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.