RLG00000003056

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010290
Physical Location & Seq
Reverse (-)
43742287 .. 43748147
5861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003056

Sequence Viewer

Length: 684 bp
ATGAAATCATCTTCTCTGATCCGAACCGGTTCCATTGGTCTCTCCGGCTCTCCCGCCGTCGACGGCTGTCCGAGAGTCTCCCTCTCTCGAACCGCCTCGCTTTCCGGCGAGAAGAGCAACGTCGCAGCTTCTCTGAGGATTTGTCTCCACTTCGACGTCCACCACCGCCGCGACAAGAACACTATCCGGCGAGCAGTATCCGAGAGCAACATTCTACGATCGGACTCCGGTAAAGCGAGATATATCCCGTCCGGAAGGTCGCCGGGAAGTGGAATTCCGGAAGAGGAGATGGGAAGCAAAACGGTGACGATCGAAAGAGAACAGCGGAGAAAGATGGGAGAGTATTATCAGAAGATGCTCAAGTCTAATCCGAGTGATCCTCTGCTGCTCAGAAACTACGGTCAATTCCTGCACGAGGTGGAGAAGGATATGGTGCGAGCTGAGGAGTACTATTGCAGAGCCATATTGGCGAGTCCCGGAGACGGCGAGTTGTTGTCGCTGTACGGGAAGCTGATATGGGAGAGTCAGAGGGATAAGGATCGGGCCAAATCTTACTTTAACCAGGCTGTTTCGGCTTCACCTGACGATTGCATGGTTTTGGGATCCTTTGCCAGCTTCATGTGGGAAGCAGAGGAAGACGAAGAAGAAGACAACAGTAACACCACAACTGATCAAGCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.33

Weight (kDa)

5.9

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 111 - 154 2.7e-07 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 171
AccIII TCCGGA 2 cut(s) 251, 277
AciI CCGC 5 cut(s) 54, 93, 166, 169, 325
AclWI GGATC 5 cut(s) 13, 371, 546, 597, 610
AcsI RAATTY 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 156
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 2 cut(s) 449, 503
AfiI CCNNNNNNNGG 3 cut(s) 269, 415, 482
AgeI ACCGGT 1 cut(s) 26
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 4 cut(s) 128, 440, 511, 615
AluI AGCT 4 cut(s) 128, 440, 511, 615
Alw26I GTCTC 4 cut(s) 44, 82, 149, 474
AlwI GGATC 5 cut(s) 13, 371, 546, 597, 610
Aor13HI TCCGGA 2 cut(s) 251, 277
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 2 cut(s) 125, 385
ApoI RAATTY 1 cut(s) 273
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 543
AsuC2I CCSGG 2 cut(s) 264, 477
AsuHPI GGTGA 2 cut(s) 316, 570
BamHI GGATCC 1 cut(s) 602
BauI CACGAG 1 cut(s) 413
BbsI GAAGAC 2 cut(s) 642, 654
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 137, 372
BccI CCATC 2 cut(s) 283, 328
BceAI ACGGC 3 cut(s) 41, 79, 499
BciT130I CCWGG 1 cut(s) 563
BciVI GTATCC 1 cut(s) 208
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 2 cut(s) 264, 477
BcoDI GTCTC 4 cut(s) 44, 82, 149, 474
BfuI GTATCC 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 3 cut(s) 126, 169, 386
BlsI GCNGC 3 cut(s) 127, 170, 387
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 3 cut(s) 264, 477, 563
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 2 cut(s) 31, 604
BmrFI CCNGG 3 cut(s) 264, 477, 563
BmsI GCATC 1 cut(s) 345
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 2 cut(s) 642, 654
BplI GAGNNNNNCTC 4 cut(s) 66, 98, 364, 396
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 2 cut(s) 264, 477
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 44
BsaWI WCCGGW 4 cut(s) 26, 227, 251, 277
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 415, 482
Bse118I RCCGGY 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 537
BseAI TCCGGA 2 cut(s) 251, 277
BseBI CCWGG 1 cut(s) 563
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 269, 415, 482
BseMII CTCAG 3 cut(s) 125, 403, 432
BseRI GAGGAG 2 cut(s) 299, 458
BseXI GCAGC 2 cut(s) 137, 372
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 2 cut(s) 221, 312
BshFI GGCC 1 cut(s) 545
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 221, 312
BsiSI CCGG 9 cut(s) 27, 45, 105, 187, 228, 252, 263, 278, 477
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 3 cut(s) 269, 415, 482
BsmAI GTCTC 4 cut(s) 44, 82, 149, 474
BsmBI CGTCTC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 1 cut(s) 545
Bso31I GGTCTC 1 cut(s) 44
Bsp13I TCCGGA 2 cut(s) 251, 277
Bsp143I GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
BspACI CCGC 5 cut(s) 54, 93, 166, 169, 325
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 3 cut(s) 126, 402, 433
BspEI TCCGGA 2 cut(s) 251, 277
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 31, 604
BspPI GGATC 5 cut(s) 13, 371, 546, 597, 610
BspQI GCTCTTC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 3 cut(s) 304, 401, 656
Bst6I CTCTTC 2 cut(s) 107, 276
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 192, 438, 613
BstDEI CTNAG 3 cut(s) 134, 389, 441
BstENI CCTNNNNNAGG 1 cut(s) 413
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 7 cut(s) 21, 221, 312, 379, 541, 605, 673
BstMAI GTCTC 4 cut(s) 44, 82, 149, 474
BstMBI GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
BstMCI CGRYCG 2 cut(s) 221, 312
BstMWI GCNNNNNNNGC 3 cut(s) 114, 467, 572
BstNI CCWGG 1 cut(s) 563
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 262, 475, 561
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 137, 372
BstV2I GAAGAC 2 cut(s) 642, 654
BstX2I RGATCY 1 cut(s) 602
BstYI RGATCY 1 cut(s) 602
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 545
Cac8I GCNNGC 3 cut(s) 192, 438, 613
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 543
Csp6I GTAC 2 cut(s) 448, 502
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 2 cut(s) 592, 619
CviQI GTAC 2 cut(s) 448, 502
DdeI CTNAG 3 cut(s) 134, 389, 441
DpnI GATC 7 cut(s) 20, 220, 311, 378, 540, 604, 672
DpnII GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
DraIII CACNNNGTG 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 107, 276
EarI CTCTTC 2 cut(s) 107, 276
Eco31I GGTCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 474
FaeI CATG 2 cut(s) 595, 622
FaiI YATR 6 cut(s) 243, 431, 464, 517, 593, 620
FaqI GGGAC 1 cut(s) 459
FatI CATG 2 cut(s) 591, 618
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 126, 169, 386
Fsp4HI GCNGC 3 cut(s) 126, 169, 386
GluI GCNGC 3 cut(s) 126, 169, 386
HaeIII GGCC 1 cut(s) 545
HapII CCGG 9 cut(s) 27, 45, 105, 187, 228, 252, 263, 278, 477
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 595, 622
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 4 cut(s) 75, 224, 472, 523
HpaII CCGG 9 cut(s) 27, 45, 105, 187, 228, 252, 263, 278, 477
HphI GGTGA 2 cut(s) 316, 570
Hpy166II GTNNAC 2 cut(s) 61, 160
Hpy188III TCNNGA 3 cut(s) 87, 252, 278
Hpy8I GTNNAC 2 cut(s) 61, 160
Hpy99I CGWCG 4 cut(s) 62, 65, 125, 158
HpyAV CCTTC 2 cut(s) 249, 418
HpyCH4III ACNGT 3 cut(s) 304, 401, 656
HpyCH4IV ACGT 2 cut(s) 120, 156
HpyCH4V TGCA 3 cut(s) 412, 456, 591
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 467, 572
HpyF3I CTNAG 3 cut(s) 134, 389, 441
HpySE526I ACGT 2 cut(s) 120, 156
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 595, 622
Kpn2I TCCGGA 2 cut(s) 251, 277
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
LguI GCTCTTC 1 cut(s) 107
Lsp1109I GCAGC 2 cut(s) 137, 372
LweI GCATC 1 cut(s) 345
MaeII ACGT 2 cut(s) 120, 156
MaeIII GTNAC 2 cut(s) 304, 656
MalI GATC 7 cut(s) 20, 220, 311, 378, 540, 604, 672
MboI GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
MboII GAAGA 8 cut(s) 3, 124, 293, 364, 647, 653, 656, 659
MflI RGATCY 1 cut(s) 602
MluCI AATT 3 cut(s) 273, 404, 679
MlyI GAGTC 4 cut(s) 84, 218, 481, 532
MnlI CCTC 9 cut(s) 92, 106, 129, 277, 390, 409, 436, 522, 625
MroI TCCGGA 2 cut(s) 251, 277
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 2 cut(s) 558, 682
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 9 cut(s) 27, 45, 105, 187, 228, 252, 263, 278, 477
MspR9I CCNGG 3 cut(s) 264, 477, 563
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 114, 467, 572
NciI CCSGG 2 cut(s) 264, 477
NdeII GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
NlaIII CATG 2 cut(s) 595, 622
NlaIV GGNNCC 2 cut(s) 31, 604
NmuCI GTSAC 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 475
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 3 cut(s) 127, 170, 387
Ple19I CGATCG 2 cut(s) 221, 312
PleI GAGTC 4 cut(s) 83, 218, 480, 531
PpsI GAGTC 4 cut(s) 83, 218, 480, 531
PshAI GACNNNNGTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 31, 604
PspPI GGNCC 1 cut(s) 543
PsuI RGATCY 1 cut(s) 602
PvuI CGATCG 2 cut(s) 221, 312
RsaI GTAC 2 cut(s) 449, 503
RsaNI GTAC 2 cut(s) 448, 502
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 558, 682
SatI GCNGC 3 cut(s) 126, 169, 386
Sau3AI GATC 7 cut(s) 18, 218, 309, 376, 538, 602, 670
Sau96I GGNCC 1 cut(s) 543
ScaI AGTACT 1 cut(s) 449
SchI GAGTC 4 cut(s) 84, 218, 481, 532
ScrFI CCNGG 3 cut(s) 264, 477, 563
SetI ASST 9 cut(s) 123, 130, 159, 260, 420, 442, 513, 583, 617
SfaNI GCATC 1 cut(s) 345
SgrDI CGTCGACG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 3 cut(s) 273, 404, 679
SsiI CCGC 5 cut(s) 54, 93, 166, 169, 325
StyD4I CCNGG 3 cut(s) 262, 475, 561
TaaI ACNGT 3 cut(s) 304, 401, 656
TaiI ACGT 2 cut(s) 123, 159
TaqI TCGA 4 cut(s) 60, 88, 153, 312
TasI AATT 3 cut(s) 273, 404, 679
TatI WGTACW 1 cut(s) 447
TauI GCSGC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 558, 682
Tru9I TTAA 2 cut(s) 558, 682
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 125, 385
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 17, 607
XagI CCTNNNNNAGG 1 cut(s) 413
XapI RAATTY 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 28
ZraI GACGTC 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.