Rmu_sc0006908.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006908.1
OG0010290
Physical Location & Seq
Reverse (-)
14755 .. 15201
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006908.1_g000004.1.cds

Sequence Viewer

Length: 447 bp
atgaaatcatctgctctgatccgaaccggttccattggtctctccggctctcccgccgtctccggctctccgagagtctccctctctcgaaccgactcgctctccggcgccgagaagagcaccgtcgcagcctctctgagggtttgtctccacttcgacgtcaaccgcagccgcgacaagaacactattcggcgagctgtatccgagagcaacattctacgaccggactccggtaaagagaggtatatcacgtccggaagcaggtccaggtctccgggaagtggaattccggaagaggagatgggaagcaaaaaggtgacgatcgaaagagaagagcggagaaagatgggagagtattatcaggcgatgctcaagtctaatccgagtgatcctctgctgctcagaaactacggtcaattcctgcacgaggtaattaatttaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.24

Weight (kDa)

9.99

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 337
AccII CGCG 1 cut(s) 174
AccIII TCCGGA 2 cut(s) 254, 289
AciI CCGC 4 cut(s) 54, 166, 172, 337
AclWI GGATC 2 cut(s) 13, 383
AcsI RAATTY 1 cut(s) 285
AcyI GRCGYC 2 cut(s) 108, 159
AfiI CCNNNNNNNGG 5 cut(s) 138, 230, 261, 281, 427
AgeI ACCGGT 1 cut(s) 26
AjiI CACGTC 1 cut(s) 252
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 5 cut(s) 44, 64, 82, 152, 276
AlwI GGATC 2 cut(s) 13, 383
Aor13HI TCCGGA 2 cut(s) 254, 289
ApeKI GCWGC 3 cut(s) 128, 168, 397
ApoI RAATTY 1 cut(s) 285
AseI ATTAAT 1 cut(s) 435
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 107
BauI CACGAG 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 3 cut(s) 140, 180, 384
BccI CCATC 2 cut(s) 295, 340
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 268
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 5 cut(s) 44, 64, 82, 152, 276
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 252
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 4 cut(s) 129, 169, 172, 398
BlsI GCNGC 4 cut(s) 130, 170, 173, 399
Bme1390I CCNGG 2 cut(s) 268, 276
Bme18I GGWCC 1 cut(s) 264
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 31, 109
BmrFI CCNGG 2 cut(s) 268, 276
BmsI GCATC 1 cut(s) 357
BplI GAGNNNNNCTC 4 cut(s) 66, 98, 376, 408
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 276
BsaHI GRCGYC 2 cut(s) 108, 159
BsaI GGTCTC 2 cut(s) 44, 276
BsaWI WCCGGW 5 cut(s) 26, 223, 230, 254, 289
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 230, 261, 281, 427
Bse118I RCCGGY 1 cut(s) 26
BseAI TCCGGA 2 cut(s) 254, 289
BseBI CCWGG 1 cut(s) 268
BseLI CCNNNNNNNGG 5 cut(s) 138, 230, 261, 281, 427
BseMII CTCAG 2 cut(s) 128, 415
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 3 cut(s) 140, 180, 384
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 2 cut(s) 224, 324
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 224, 324
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 9 cut(s) 27, 45, 63, 105, 224, 231, 255, 275, 290
BslI CCNNNNNNNGG 5 cut(s) 138, 230, 261, 281, 427
BsmAI GTCTC 5 cut(s) 44, 64, 82, 152, 276
BsmBI CGTCTC 1 cut(s) 64
Bso31I GGTCTC 2 cut(s) 44, 276
Bsp1286I GDGCHC 1 cut(s) 122
Bsp13I TCCGGA 2 cut(s) 254, 289
Bsp143I GATC 3 cut(s) 18, 321, 388
BspACI CCGC 4 cut(s) 54, 166, 172, 337
BspCNI CTCAG 2 cut(s) 129, 414
BspEI TCCGGA 2 cut(s) 254, 289
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 31, 109
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 2 cut(s) 13, 383
BspQI GCTCTTC 2 cut(s) 110, 327
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 2 cut(s) 44, 276
BsrBI CCGCTC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 3 cut(s) 18, 321, 388
BssNI GRCGYC 2 cut(s) 108, 159
BssSI CACGAG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 124, 413
Bst6I CTCTTC 3 cut(s) 110, 288, 327
BstACI GRCGYC 2 cut(s) 108, 159
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 137, 401
BstENI CCTNNNNNAGG 2 cut(s) 136, 425
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 3 cut(s) 21, 324, 391
BstMAI GTCTC 5 cut(s) 44, 64, 82, 152, 276
BstMBI GATC 3 cut(s) 18, 321, 388
BstMCI CGRYCG 2 cut(s) 224, 324
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 266, 274
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 140, 180, 384
BsuI GTATCC 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 380
BtrI CACGTC 1 cut(s) 252
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 264
CspAI ACCGGT 1 cut(s) 26
CviJI RGCY 5 cut(s) 48, 66, 131, 171, 197
CviKI_1 RGCY 5 cut(s) 48, 66, 131, 171, 197
DdeI CTNAG 2 cut(s) 137, 401
DinI GGCGCC 1 cut(s) 109
DpnI GATC 3 cut(s) 20, 323, 390
DpnII GATC 3 cut(s) 18, 321, 388
Eam1104I CTCTTC 3 cut(s) 110, 288, 327
EarI CTCTTC 3 cut(s) 110, 288, 327
Eco31I GGTCTC 2 cut(s) 44, 276
Eco47I GGWCC 1 cut(s) 264
EcoNI CCTNNNNNAGG 2 cut(s) 136, 425
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 266
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 64
FaiI YATR 1 cut(s) 246
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 129, 169, 172, 398
Fsp4HI GCNGC 4 cut(s) 129, 169, 172, 398
GlaI GCGC 1 cut(s) 109
GluI GCNGC 4 cut(s) 129, 169, 172, 398
HaeII RGCGCY 1 cut(s) 111
HapII CCGG 9 cut(s) 27, 45, 63, 105, 224, 231, 255, 275, 290
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 2 cut(s) 108, 159
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 3 cut(s) 75, 95, 227
HpaII CCGG 9 cut(s) 27, 45, 63, 105, 224, 231, 255, 275, 290
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 7 cut(s) 18, 23, 72, 138, 205, 384, 404
Hpy188III TCNNGA 3 cut(s) 87, 255, 290
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 128, 161
HpyCH4III ACNGT 2 cut(s) 124, 413
HpyCH4IV ACGT 2 cut(s) 159, 251
HpyCH4V TGCA 1 cut(s) 424
HpyF3I CTNAG 2 cut(s) 137, 401
HpySE526I ACGT 2 cut(s) 159, 251
Hsp92I GRCGYC 2 cut(s) 108, 159
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
Kpn2I TCCGGA 2 cut(s) 254, 289
Kzo9I GATC 3 cut(s) 18, 321, 388
LguI GCTCTTC 2 cut(s) 110, 327
Lsp1109I GCAGC 3 cut(s) 140, 180, 384
LweI GCATC 1 cut(s) 357
MaeII ACGT 2 cut(s) 159, 251
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 20, 323, 390
MbiI CCGCTC 1 cut(s) 337
MboI GATC 3 cut(s) 18, 321, 388
MboII GAAGA 3 cut(s) 127, 305, 344
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 4 cut(s) 285, 416, 432, 436
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 3 cut(s) 84, 89, 221
MnlI CCTC 7 cut(s) 92, 132, 142, 234, 289, 402, 421
MroI TCCGGA 2 cut(s) 254, 289
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 2 cut(s) 435, 440
MspI CCGG 9 cut(s) 27, 45, 63, 105, 224, 231, 255, 275, 290
MspR9I CCNGG 2 cut(s) 268, 276
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 174
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 1 cut(s) 276
NdeII GATC 3 cut(s) 18, 321, 388
NlaIV GGNNCC 2 cut(s) 31, 109
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 316
PciSI GCTCTTC 2 cut(s) 110, 327
PdmI GAANNNNTTC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 4 cut(s) 130, 170, 173, 399
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 3 cut(s) 83, 89, 221
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 3 cut(s) 83, 89, 221
PshBI ATTAAT 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 31, 109
PspPI GGNCC 1 cut(s) 264
PvuI CGATCG 1 cut(s) 324
SapI GCTCTTC 2 cut(s) 110, 327
SaqAI TTAA 2 cut(s) 435, 440
SatI GCNGC 4 cut(s) 129, 169, 172, 398
Sau3AI GATC 3 cut(s) 18, 321, 388
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 3 cut(s) 84, 89, 221
ScrFI CCNGG 2 cut(s) 268, 276
SduI GDGCHC 1 cut(s) 122
SetI ASST 9 cut(s) 162, 199, 245, 254, 266, 272, 318, 432, 446
SfaNI GCATC 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 109
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 4 cut(s) 285, 416, 432, 436
SsiI CCGC 4 cut(s) 54, 166, 172, 337
SspDI GGCGCC 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 266, 274
TaaI ACNGT 2 cut(s) 124, 413
TaiI ACGT 2 cut(s) 162, 254
TaqI TCGA 3 cut(s) 88, 156, 324
TasI AATT 4 cut(s) 285, 416, 432, 436
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 435, 440
Tru9I TTAA 2 cut(s) 435, 440
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 128, 168, 397
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 264
VspI ATTAAT 1 cut(s) 435
XagI CCTNNNNNAGG 2 cut(s) 136, 425
XapI RAATTY 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 28
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.