Rmu_sc0017046.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017046.1
OG0010290
Physical Location & Seq
Reverse (-)
43160 .. 45624
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017046.1_g000010.1.cds

Sequence Viewer

Length: 825 bp
atgaaatcatctgctctgatccgaaccggttccattggtctctccggctctcccgccgtctccggctctccgagagtctccctctctcgaaccgactcgctctccggcgccgagaagagcaccgtcgcagcctctctgagggtttgtctccacttcgacgtcaaccgcagccgcgacaagaacactattcggcgagctgtatctgagagcaacattctacgaccggactccggtaaagagaggtatatcacgtccggaagcaggtccaggtctccgggaagtggaattccggaagaggagatgggaagcaaaaaggtgacgatcgaaagagaagagcggagaaagatgggagagtattatcaggcgatgctcaagtctaatccgagtgatcctctgctgctcagaaactacggtcaattcctgcacgaggtggagaaggatatggtgcgagccgaggagtactattgcagagccatattggcgagtcccggagacggcgagttgttgtcgctgtacgggaagctgatatgggagagtcagagggataaggatcgggccaattcttactttaaccaggctgtttcggcttcacccaacaattgcatggttttgggatcctttgctagcttcatgtgggaagtagaggaagatgaagaaaacgatgaagaaatcaacagtaacgtacacatggttttgggttcccctgcaagcttcatgtgggaagcagaggaagacgaagaagaagaagaagaagatcaagaattcaacagtaacaccacaactgctcaagtctcatcggcagctcagctggttccagcattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.49

Weight (kDa)

4.8

Isoelectric Point (pI)

64.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 337
AccII CGCG 1 cut(s) 174
AccIII TCCGGA 2 cut(s) 254, 289
AciI CCGC 4 cut(s) 54, 166, 172, 337
AclWI GGATC 5 cut(s) 13, 383, 558, 609, 622
AcsI RAATTY 2 cut(s) 285, 761
AcyI GRCGYC 2 cut(s) 108, 159
AdeI CACNNNGTG 1 cut(s) 430
AfaI GTAC 3 cut(s) 461, 515, 684
AfiI CCNNNNNNNGG 6 cut(s) 138, 230, 261, 281, 427, 494
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 766
AjiI CACGTC 1 cut(s) 252
AjnI CCWGG 2 cut(s) 266, 573
AluBI AGCT 6 cut(s) 197, 523, 627, 711, 803, 808
AluI AGCT 6 cut(s) 197, 523, 627, 711, 803, 808
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 7 cut(s) 44, 64, 82, 152, 276, 486, 796
AlwI GGATC 5 cut(s) 13, 383, 558, 609, 622
Aor13HI TCCGGA 2 cut(s) 254, 289
AoxI GGCC 1 cut(s) 555
ApeKI GCWGC 4 cut(s) 128, 168, 397, 800
ApoI RAATTY 2 cut(s) 285, 761
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 264, 555
AsuC2I CCSGG 2 cut(s) 276, 489
AsuHPI GGTGA 2 cut(s) 328, 582
AsuNHI GCTAGC 1 cut(s) 623
AvaII GGWCC 1 cut(s) 264
BamHI GGATCC 1 cut(s) 614
BanI GGYRCC 1 cut(s) 107
BauI CACGAG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 4 cut(s) 140, 180, 384, 812
BccI CCATC 2 cut(s) 295, 340
BceAI ACGGC 2 cut(s) 41, 511
BciT130I CCWGG 2 cut(s) 268, 575
BcnI CCSGG 2 cut(s) 276, 489
BcoDI GTCTC 7 cut(s) 44, 64, 82, 152, 276, 486, 796
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 5 cut(s) 129, 169, 172, 398, 801
BlpI GCTNAGC 1 cut(s) 804
BlsI GCNGC 5 cut(s) 130, 170, 173, 399, 802
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 4 cut(s) 268, 276, 489, 575
Bme18I GGWCC 1 cut(s) 264
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 264, 555
BmiI GGNNCC 5 cut(s) 31, 109, 616, 700, 813
BmrFI CCNGG 4 cut(s) 268, 276, 489, 575
BmsI GCATC 1 cut(s) 357
BmtI GCTAGC 1 cut(s) 627
BpiI GAAGAC 1 cut(s) 738
BplI GAGNNNNNCTC 4 cut(s) 66, 98, 376, 408
Bpu1102I GCTNAGC 1 cut(s) 804
BpuEI CTTGAG 2 cut(s) 356, 771
BpuMI CCSGG 2 cut(s) 276, 489
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 2 cut(s) 108, 159
BsaI GGTCTC 2 cut(s) 44, 276
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 5 cut(s) 26, 223, 230, 254, 289
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 6 cut(s) 138, 230, 261, 281, 427, 494
Bse118I RCCGGY 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 549
BseAI TCCGGA 2 cut(s) 254, 289
BseBI CCWGG 2 cut(s) 268, 575
BseDI CCNNGG 1 cut(s) 453
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 6 cut(s) 138, 230, 261, 281, 427, 494
BseMII CTCAG 4 cut(s) 128, 195, 415, 818
BseRI GAGGAG 2 cut(s) 311, 470
BseXI GCAGC 4 cut(s) 140, 180, 384, 812
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 2 cut(s) 224, 324
BshFI GGCC 1 cut(s) 557
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 224, 324
BsiHKAI GWGCWC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 6 cut(s) 138, 230, 261, 281, 427, 494
BsmAI GTCTC 7 cut(s) 44, 64, 82, 152, 276, 486, 796
BsmBI CGTCTC 2 cut(s) 64, 486
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 1 cut(s) 557
Bso31I GGTCTC 2 cut(s) 44, 276
Bsp1286I GDGCHC 1 cut(s) 122
Bsp13I TCCGGA 2 cut(s) 254, 289
Bsp143I GATC 6 cut(s) 18, 321, 388, 550, 614, 754
Bsp1720I GCTNAGC 1 cut(s) 804
BspACI CCGC 4 cut(s) 54, 166, 172, 337
BspANI GGCC 1 cut(s) 557
BspCNI CTCAG 4 cut(s) 129, 196, 414, 817
BspEI TCCGGA 2 cut(s) 254, 289
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 5 cut(s) 31, 109, 616, 700, 813
BspMI ACCTGC 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 627
BspPI GGATC 5 cut(s) 13, 383, 558, 609, 622
BspQI GCTCTTC 2 cut(s) 110, 327
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 2 cut(s) 44, 276
BsrBI CCGCTC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 6 cut(s) 18, 321, 388, 550, 614, 754
BssNI GRCGYC 2 cut(s) 108, 159
BssSI CACGAG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 425
Bst2UI CCWGG 2 cut(s) 268, 575
Bst4CI ACNGT 4 cut(s) 124, 413, 677, 770
Bst6I CTCTTC 3 cut(s) 110, 288, 327
BstACI GRCGYC 2 cut(s) 108, 159
BstC8I GCNNGC 4 cut(s) 195, 450, 625, 709
BstDEI CTNAG 4 cut(s) 137, 204, 401, 804
BstENI CCTNNNNNAGG 2 cut(s) 136, 425
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 6 cut(s) 21, 324, 391, 553, 617, 757
BstMAI GTCTC 7 cut(s) 44, 64, 82, 152, 276, 486, 796
BstMBI GATC 6 cut(s) 18, 321, 388, 550, 614, 754
BstMCI CGRYCG 2 cut(s) 224, 324
BstMWI GCNNNNNNNGC 2 cut(s) 479, 584
BstNI CCWGG 2 cut(s) 268, 575
BstSCI CCNGG 4 cut(s) 266, 274, 487, 573
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 4 cut(s) 140, 180, 384, 812
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 1 cut(s) 557
BtgZI GCGATG 1 cut(s) 380
BtrI CACGTC 1 cut(s) 252
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 4 cut(s) 195, 450, 625, 709
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 264, 555
Csp6I GTAC 3 cut(s) 460, 514, 683
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 4 cut(s) 604, 631, 688, 715
CviQI GTAC 3 cut(s) 460, 514, 683
DdeI CTNAG 4 cut(s) 137, 204, 401, 804
DinI GGCGCC 1 cut(s) 109
DpnI GATC 6 cut(s) 20, 323, 390, 552, 616, 756
DpnII GATC 6 cut(s) 18, 321, 388, 550, 614, 754
DraIII CACNNNGTG 1 cut(s) 430
Eam1104I CTCTTC 3 cut(s) 110, 288, 327
EarI CTCTTC 3 cut(s) 110, 288, 327
Eco31I GGTCTC 2 cut(s) 44, 276
Eco47I GGWCC 1 cut(s) 264
EcoNI CCTNNNNNAGG 2 cut(s) 136, 425
EcoRI GAATTC 2 cut(s) 285, 761
EcoRII CCWGG 2 cut(s) 266, 573
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
Esp3I CGTCTC 2 cut(s) 64, 486
FaeI CATG 4 cut(s) 607, 634, 691, 718
FaiI YATR 8 cut(s) 246, 443, 476, 529, 605, 632, 689, 716
FaqI GGGAC 1 cut(s) 471
FatI CATG 4 cut(s) 603, 630, 687, 714
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 5 cut(s) 129, 169, 172, 398, 801
Fsp4HI GCNGC 5 cut(s) 129, 169, 172, 398, 801
FspBI CTAG 1 cut(s) 624
GlaI GCGC 1 cut(s) 109
GluI GCNGC 5 cut(s) 129, 169, 172, 398, 801
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 557
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 2 cut(s) 108, 159
Hin1II CATG 4 cut(s) 607, 634, 691, 718
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 5 cut(s) 75, 95, 227, 484, 535
HphI GGTGA 2 cut(s) 328, 582
Hpy166II GTNNAC 2 cut(s) 163, 685
Hpy188I TCNGA 8 cut(s) 18, 23, 72, 138, 205, 384, 404, 540
Hpy188III TCNNGA 4 cut(s) 87, 255, 290, 758
Hpy8I GTNNAC 2 cut(s) 163, 685
Hpy99I CGWCG 2 cut(s) 128, 161
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 4 cut(s) 124, 413, 677, 770
HpyCH4IV ACGT 3 cut(s) 159, 251, 681
HpyCH4V TGCA 4 cut(s) 424, 468, 603, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 584
HpyF3I CTNAG 4 cut(s) 137, 204, 401, 804
HpySE526I ACGT 3 cut(s) 159, 251, 681
Hsp92I GRCGYC 2 cut(s) 108, 159
Hsp92II CATG 4 cut(s) 607, 634, 691, 718
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
Kpn2I TCCGGA 2 cut(s) 254, 289
Kzo9I GATC 6 cut(s) 18, 321, 388, 550, 614, 754
LguI GCTCTTC 2 cut(s) 110, 327
Lsp1109I GCAGC 4 cut(s) 140, 180, 384, 812
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 624
MaeII ACGT 3 cut(s) 159, 251, 681
MaeIII GTNAC 3 cut(s) 316, 677, 770
MalI GATC 6 cut(s) 20, 323, 390, 552, 616, 756
MbiI CCGCTC 1 cut(s) 337
MboI GATC 6 cut(s) 18, 321, 388, 550, 614, 754
MfeI CAATTG 1 cut(s) 598
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 5 cut(s) 285, 416, 559, 598, 761
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 5 cut(s) 84, 89, 221, 493, 544
MroI TCCGGA 2 cut(s) 254, 289
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 808
MspR9I CCNGG 4 cut(s) 268, 276, 489, 575
MunI CAATTG 1 cut(s) 598
MvaI CCWGG 2 cut(s) 268, 575
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 479, 584
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 2 cut(s) 276, 489
NdeII GATC 6 cut(s) 18, 321, 388, 550, 614, 754
NheI GCTAGC 1 cut(s) 623
NlaIII CATG 4 cut(s) 607, 634, 691, 718
NlaIV GGNNCC 5 cut(s) 31, 109, 616, 700, 813
NmeAIII GCCGAG 2 cut(s) 136, 478
NmuCI GTSAC 1 cut(s) 316
PciSI GCTCTTC 2 cut(s) 110, 327
PdmI GAANNNNTTC 1 cut(s) 28
PfoI TCCNGGA 2 cut(s) 274, 487
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 5 cut(s) 130, 170, 173, 399, 802
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 5 cut(s) 83, 89, 221, 492, 543
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 5 cut(s) 83, 89, 221, 492, 543
Psp6I CCWGG 2 cut(s) 266, 573
PspGI CCWGG 2 cut(s) 266, 573
PspN4I GGNNCC 5 cut(s) 31, 109, 616, 700, 813
PspPI GGNCC 2 cut(s) 264, 555
PsuI RGATCY 1 cut(s) 614
PvuI CGATCG 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 808
RsaI GTAC 3 cut(s) 461, 515, 684
RsaNI GTAC 3 cut(s) 460, 514, 683
SapI GCTCTTC 2 cut(s) 110, 327
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 5 cut(s) 129, 169, 172, 398, 801
Sau3AI GATC 6 cut(s) 18, 321, 388, 550, 614, 754
Sau96I GGNCC 2 cut(s) 264, 555
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 5 cut(s) 84, 89, 221, 493, 544
ScrFI CCNGG 4 cut(s) 268, 276, 489, 575
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 109
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 371, 786
SmoI CTYRAG 2 cut(s) 371, 786
Sse9I AATT 5 cut(s) 285, 416, 559, 598, 761
SsiI CCGC 4 cut(s) 54, 166, 172, 337
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 4 cut(s) 266, 274, 487, 573
TaaI ACNGT 4 cut(s) 124, 413, 677, 770
TaiI ACGT 3 cut(s) 162, 254, 684
TaqI TCGA 3 cut(s) 88, 156, 324
TasI AATT 5 cut(s) 285, 416, 559, 598, 761
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 4 cut(s) 128, 168, 397, 800
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 5 cut(s) 17, 619, 666, 678, 703
VpaK11BI GGWCC 1 cut(s) 264
XagI CCTNNNNNAGG 2 cut(s) 136, 425
XapI RAATTY 2 cut(s) 285, 761
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 28
XspI CTAG 1 cut(s) 624
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.