Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010290

Physical Location & Seq

Genomic Coordinates Reverse (-)

3707153 .. 3709129

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G032400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAGCTGTAATGATCCGAACCGGTTCGATTTCGGCCCAGTCGCCGGCCGTGCCCGGTTCGCCCAGAGTGTCCCTCTCCCGAAACGACTCGCTGTCCAGCGTTTTCTCCGGCCCGAGGAGCACCGTCGGATCTCCAAGGATCTCTCTTCATCTCGACGTCAATCACCGGAGAGATAAAATGATCCGGAGAGCTCGGTCGGAGAGCGACATTCTCAGATCGGAGAACGATTTTGCGGCGAAATCGCCCGCTTTTCCTGCGGAGAAGCAGCGGTTTCCTGGCGGAGATCGTGGAGTCAACGCTTTGTCGACAGTCGACGAAGGCGAGCAGAAAAAGCTCGGAGATTATTATCAAGAAATGCTAAAGTCAAATCCCGATGACCCTCTGCTTCTGAGAAACTACGGAAAATTCTTGCATGAGGTGGAGAAGGATGTGGCGGGAGCTGAAGAGTGCTATTGCAGAGCCATATTGGCGAGCCCTGGAGATGGCGACTTGTTGTCGCTGTACGCAAAGCTGATCTGGGAGACGCACAGAGACGAGGAGAGAGCCAAGTCTTACTTTGATCAGGCCGTTTCTGCTTCCCCTGACGATTGCATGGTGTTGGGGGCCTTCGCTAGCTTCATGTGGGAAGCAGAGGAAGATGAAGAGGAGAATGAAGAAATCAACCCAAACGTTCAAGTTTCACCAGCGCCAGCTCTAGTTCATGCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.22

Weight (kDa)

4.88

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17940
fragaria_vesca	FvH4_5g22450 FvH4_5g22450 FvH4_6g30360
malus_domestica	MD06G1036900.v1.1
prunus_persica	Prupe.5G032400_v2.0.a1
pyrus_communis	pycom06g03020
rosa_chinensis	RchiOBHm_Chr7g0210241
rosa_laevigata	RLG00000003056
rosa_multiflora	Rmu_sc0006908.1_g000004 Rmu_sc0017046.1_g000010 Rmu_sc0027080.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248530
rosa_rugosa	Rorug07G0119900
rosa_samantha	Rh1AG349600 Rh7AG252800 Rh7BG247900 Rh7CG269800 Rh7DG260400
rosa_wichuraiana	Rw7G021500 Rw7G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AccI	GTMKAC	2 cut(s)	308, 315
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	6 cut(s)	236, 249, 260, 271, 282, 437
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	4 cut(s)	10, 139, 149, 178
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	3 cut(s)	46, 117, 485
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	677
AhdI	GACNNNNNGTC	2 cut(s)	94, 496
AjnI	CCWGG	2 cut(s)	277, 478
AluBI	AGCT	7 cut(s)	8, 194, 337, 443, 514, 618, 695
AluI	AGCT	7 cut(s)	8, 194, 337, 443, 514, 618, 695
Alw21I	GWGCWC	2 cut(s)	125, 196
Alw26I	GTCTC	2 cut(s)	518, 528
AlwI	GGATC	4 cut(s)	10, 139, 149, 178
Ama87I	CYCGRG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	5 cut(s)	36, 48, 112, 567, 606
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	407
AsiGI	ACCGGT	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	3 cut(s)	37, 113, 606
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	158, 675
AsuNHI	GCTAGC	1 cut(s)	614
AvaI	CYCGRG	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	196, 479
Bbv12I	GWGCWC	2 cut(s)	125, 196
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	2 cut(s)	35, 554
BciT130I	CCWGG	2 cut(s)	279, 480
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	518, 528
BfaI	CTAG	2 cut(s)	615, 698
BfoI	RGCGCY	1 cut(s)	692
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	2 cut(s)	237, 269
BlsI	GCNGC	2 cut(s)	238, 270
Bme1390I	CCNGG	3 cut(s)	57, 279, 480
BmeRI	GACNNNNNGTC	2 cut(s)	94, 496
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	37, 113, 606
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	3 cut(s)	57, 279, 480
BmrI	ACTGGG	1 cut(s)	34
BmtI	GCTAGC	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	116, 137, 478
BsaWI	WCCGGW	3 cut(s)	23, 168, 186
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 117, 485
Bse118I	RCCGGY	2 cut(s)	23, 46
Bse1I	ACTGG	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	348
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	279, 480
BseDI	CCNNGG	3 cut(s)	116, 137, 478
BseGI	GGATG	1 cut(s)	436
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	46, 117, 485
BseMII	CTCAG	2 cut(s)	229, 383
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	3 cut(s)	133, 554, 662
BseSI	GKGCMC	1 cut(s)	57
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	2 cut(s)	51, 200
BshFI	GGCC	5 cut(s)	38, 50, 114, 569, 608
BshTI	ACCGGT	1 cut(s)	23
BsiEI	CGRYCG	2 cut(s)	51, 200
BsiHKAI	GWGCWC	2 cut(s)	125, 196
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	6 cut(s)	24, 47, 57, 111, 169, 187
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	46, 117, 485
BsmAI	GTCTC	2 cut(s)	518, 528
BsmBI	CGTCTC	2 cut(s)	518, 528
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	5 cut(s)	38, 50, 114, 569, 608
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	4 cut(s)	57, 125, 196, 479
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
BspACI	CCGC	6 cut(s)	236, 249, 260, 271, 282, 437
BspANI	GGCC	5 cut(s)	38, 50, 114, 569, 608
BspCNI	CTCAG	2 cut(s)	228, 384
BspEI	TCCGGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	607
BspOI	GCTAGC	1 cut(s)	618
BspPI	GGATC	4 cut(s)	10, 139, 149, 178
BsrFI	RCCGGY	2 cut(s)	23, 46
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	2 cut(s)	23, 46
BssECI	CCNNGG	3 cut(s)	116, 137, 478
BssMI	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	279, 480
Bst4CI	ACNGT	2 cut(s)	127, 313
Bst6I	CTCTTC	3 cut(s)	153, 441, 639
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	6 cut(s)	48, 249, 326, 475, 616, 693
BstDEI	CTNAG	2 cut(s)	215, 392
BstF5I	GGATG	1 cut(s)	436
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	8 cut(s)	18, 134, 144, 186, 221, 289, 519, 565
BstMAI	GTCTC	2 cut(s)	518, 528
BstMBI	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
BstMCI	CGRYCG	2 cut(s)	51, 200
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 61, 120, 257, 334, 470, 575
BstNI	CCWGG	2 cut(s)	279, 480
BstSCI	CCNGG	3 cut(s)	55, 277, 478
BstSLI	GKGCMC	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	2 cut(s)	131, 141
BstYI	RGATCY	2 cut(s)	131, 141
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	5 cut(s)	38, 50, 114, 569, 608
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	6 cut(s)	48, 249, 326, 475, 616, 693
CfoI	GCGC	1 cut(s)	691
Cfr10I	RCCGGY	2 cut(s)	23, 46
Cfr13I	GGNCC	3 cut(s)	37, 113, 606
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	505
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	4 cut(s)	416, 595, 622, 704
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	2 cut(s)	215, 392
DpnI	GATC	8 cut(s)	17, 133, 143, 185, 220, 288, 518, 564
DpnII	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
DriI	GACNNNNNGTC	2 cut(s)	94, 496
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	3 cut(s)	153, 441, 639
Eam1105I	GACNNNNNGTC	2 cut(s)	94, 496
EarI	CTCTTC	3 cut(s)	153, 441, 639
EciI	GGCGGA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	194
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	2 cut(s)	196, 479
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	277, 478
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	2 cut(s)	196, 479
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	2 cut(s)	518, 528
FaeI	CATG	4 cut(s)	419, 598, 625, 707
FaiI	YATR	5 cut(s)	417, 467, 596, 623, 705
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	415, 594, 621, 703
FauI	CCCGC	2 cut(s)	256, 430
FbaI	TGATCA	1 cut(s)	562
FblI	GTMKAC	2 cut(s)	308, 315
Fnu4HI	GCNGC	2 cut(s)	237, 269
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	2 cut(s)	196, 479
Fsp4HI	GCNGC	2 cut(s)	237, 269
FspBI	CTAG	2 cut(s)	615, 698
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	2 cut(s)	237, 269
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	692
HaeIII	GGCC	5 cut(s)	38, 50, 114, 569, 608
HapII	CCGG	6 cut(s)	24, 47, 57, 111, 169, 187
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	691
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	419, 598, 625, 707
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	3 cut(s)	298, 309, 316
HindII	GTYRAC	3 cut(s)	298, 309, 316
HinfI	GANTC	2 cut(s)	89, 294
HpaII	CCGG	6 cut(s)	24, 47, 57, 111, 169, 187
HphI	GGTGA	2 cut(s)	158, 675
Hpy166II	GTNNAC	3 cut(s)	298, 309, 316
Hpy188I	TCNGA	7 cut(s)	20, 131, 202, 218, 223, 341, 393
Hpy188III	TCNNGA	5 cut(s)	81, 155, 187, 353, 374
Hpy8I	GTNNAC	3 cut(s)	298, 309, 316
Hpy99I	CGWCG	3 cut(s)	131, 161, 320
HpyAV	CCTTC	3 cut(s)	314, 421, 619
HpyCH4III	ACNGT	2 cut(s)	127, 313
HpyCH4IV	ACGT	2 cut(s)	159, 672
HpyCH4V	TGCA	3 cut(s)	415, 459, 594
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 61, 120, 257, 334, 470, 575
HpyF3I	CTNAG	2 cut(s)	215, 392
HpySE526I	ACGT	2 cut(s)	159, 672
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	419, 598, 625, 707
HspAI	GCGC	1 cut(s)	689
Kpn2I	TCCGGA	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
LmnI	GCTCC	2 cut(s)	120, 440
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	615, 698
MaeII	ACGT	2 cut(s)	159, 672
MalI	GATC	8 cut(s)	17, 133, 143, 185, 220, 288, 518, 564
MboI	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
MboII	GAAGA	5 cut(s)	140, 458, 650, 656, 668
MflI	RGATCY	2 cut(s)	131, 141
MhlI	GDGCHC	4 cut(s)	57, 125, 196, 479
MluCI	AATT	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	83, 303
MmeI	TCCRAC	2 cut(s)	109, 180
MnlI	CCTC	7 cut(s)	86, 111, 393, 412, 532, 628, 640
MroI	TCCGGA	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	6 cut(s)	24, 47, 57, 111, 169, 187
MspR9I	CCNGG	3 cut(s)	57, 279, 480
MvaI	CCWGG	2 cut(s)	279, 480
MwoI	GCNNNNNNNGC	7 cut(s)	52, 61, 120, 257, 334, 470, 575
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
NgoMIV	GCCGGC	1 cut(s)	46
NheI	GCTAGC	1 cut(s)	614
NlaIII	CATG	4 cut(s)	419, 598, 625, 707
NlaIV	GGNNCC	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	238, 270
PleI	GAGTC	2 cut(s)	83, 302
PpsI	GAGTC	2 cut(s)	83, 302
Psp124BI	GAGCTC	1 cut(s)	196
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	2 cut(s)	277, 478
PspGI	CCWGG	2 cut(s)	277, 478
PspN4I	GGNNCC	1 cut(s)	607
PspPI	GGNCC	3 cut(s)	37, 113, 606
PsuI	RGATCY	2 cut(s)	131, 141
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	196
SalI	GTCGAC	2 cut(s)	307, 314
SatI	GCNGC	2 cut(s)	237, 269
Sau3AI	GATC	8 cut(s)	15, 131, 141, 183, 218, 286, 516, 562
Sau96I	GGNCC	3 cut(s)	37, 113, 606
SchI	GAGTC	2 cut(s)	83, 303
ScrFI	CCNGG	3 cut(s)	57, 279, 480
SduI	GDGCHC	4 cut(s)	57, 125, 196, 479
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	6 cut(s)	236, 249, 260, 271, 282, 437
SspMI	CTAG	2 cut(s)	615, 698
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	3 cut(s)	55, 277, 478
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	127, 313
TaiI	ACGT	2 cut(s)	162, 675
TaqI	TCGA	4 cut(s)	29, 156, 308, 315
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	407
TauI	GCSGC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	5 cut(s)	140, 610, 657, 669, 692
TspGWI	ACGGA	1 cut(s)	417
XapI	RAATTY	1 cut(s)	407
XmiI	GTMKAC	2 cut(s)	308, 315
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	2 cut(s)	615, 698
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.