Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Reverse (-)

9978703 .. 9980555

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGGAGTTCATGTTTGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCTCATAGGCTACTACTTGAGTAGAAAAATAGAAGGTCTCGAGATTGAGCTTGAAGTCATTCCTGTTATCGACTTATACAAATTTGATCCTTGGGAGTTGCCAGGTAAATCTTTCCTTCCAAATAGAGATTTGGAATGGTTCTTTTTCTGTCCAAGAGACAAAAAATATGCAAACGGTTCTCGAACCAATAGGGCTACAAAAGCGGGTTATTGGAAAGCAACTGGTAAAGACCGGAAAATCACTTGTAAATCATCGCATGTTATAGCTGGATACCGAAAAACCTTAGTTTTCTATGAAGGTCGTGCCCCATTAGGCGACAGAACTAATTGGTTTATGCATGAATATCGTCTATGCGATATTGATGATCATTCACAAAAATCACCAAATTTCAAGGGAGCTTTTGCGTTATGTCGCGTAGTTAAGAAGAATGAACTGAAGAAAAATTCGAAAAGTTTGAAAAATAAAAACGAACAAGACATTGGTTCTTGTTACTCTAGCCTCGCGACCTCTCCTTGTCGCGATGAAGCGTCGCAGATTCAATCGTTCAAGCCTTCTTCTACTACAAACGACTCTTCAAGCATTTGGATTTCTCCTGATTTCATCCTTGATTCGTCAAAGGATTATCCTCAGATTAAGGAGGTTGCTTCTGAGTGCTTTCCCAACTACCATTTTCCGGTCACCACGGCAAACCACCACGTGGAATTTCCGCTACAAGAAATGTTGGTTCGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

262

Amino Acids

30.12

Weight (kDa)

8.51

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 135	1e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccII	CGCG	3 cut(s)	468, 557, 573
AciI	CCGC	2 cut(s)	257, 761
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	4 cut(s)	134, 439, 496, 755
AcuI	CTGAAG	1 cut(s)	509
AcvI	CACGTG	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	751
AfiI	CCNNNNNNNGG	2 cut(s)	727, 751
AgsI	TTSAA	6 cut(s)	107, 445, 511, 593, 601, 630
AjnI	CCWGG	2 cut(s)	22, 154
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	4 cut(s)	55, 103, 320, 452
AluI	AGCT	4 cut(s)	55, 103, 320, 452
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	95, 204
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	92
ApoI	RAATTY	4 cut(s)	134, 439, 496, 755
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	426, 724
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	751
Bbv12I	GWGCWC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	753
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	2 cut(s)	24, 156
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	95, 204
BfaI	CTAG	1 cut(s)	549
BfuI	GTATCC	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	24, 156
BmeT110I	CYCGRG	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	24, 156
BpmI	CTGGAG	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	143, 735
BsaWI	WCCGGW	2 cut(s)	285, 727
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	727, 751
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	24, 156
BseDI	CCNNGG	2 cut(s)	143, 735
BseGI	GGATG	2 cut(s)	37, 654
BseLI	CCNNNNNNNGG	2 cut(s)	727, 751
BseMII	CTCAG	2 cut(s)	693, 695
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	361
Bsh1236I	CGCG	3 cut(s)	468, 557, 573
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	286, 728
BslI	CCNNNNNNNGG	2 cut(s)	727, 751
BsmAI	GTCTC	2 cut(s)	95, 204
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	57, 361
Bsp143I	GATC	2 cut(s)	139, 418
Bsp68I	TCGCGA	2 cut(s)	557, 573
BspACI	CCGC	2 cut(s)	257, 761
BspCNI	CTCAG	2 cut(s)	694, 694
BspFNI	CGCG	3 cut(s)	468, 557, 573
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	143, 735
BssMI	GATC	2 cut(s)	139, 418
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	2 cut(s)	24, 156
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	45, 631
BstBAI	YACGTR	1 cut(s)	751
BstBI	TTCGAA	1 cut(s)	500
BstDEI	CTNAG	4 cut(s)	337, 681, 702, 786
BstDSI	CCRYGG	1 cut(s)	735
BstEII	GGTNACC	1 cut(s)	730
BstF5I	GGATG	2 cut(s)	37, 654
BstFNI	CGCG	3 cut(s)	468, 557, 573
BstKTI	GATC	2 cut(s)	142, 421
BstMAI	GTCTC	2 cut(s)	95, 204
BstMBI	GATC	2 cut(s)	139, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	24, 156
BstNSI	RCATGY	1 cut(s)	314
BstPI	GGTNACC	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	22, 154
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	3 cut(s)	468, 557, 573
BsuI	GTATCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	735
BtgZI	GCGATG	2 cut(s)	291, 588
BtsCI	GGATG	2 cut(s)	37, 654
BtuMI	TCGCGA	2 cut(s)	557, 573
CseI	GACGC	1 cut(s)	570
CviAII	CATG	3 cut(s)	12, 311, 392
CviJI	RGCY	8 cut(s)	55, 63, 103, 248, 320, 452, 552, 604
CviKI_1	RGCY	8 cut(s)	55, 63, 103, 248, 320, 452, 552, 604
DdeI	CTNAG	4 cut(s)	337, 681, 702, 786
DpnI	GATC	2 cut(s)	141, 420
DpnII	GATC	2 cut(s)	139, 418
DraIII	CACNNNGTG	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	45, 631
EarI	CTCTTC	2 cut(s)	45, 631
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	509
Eco72I	CACGTG	1 cut(s)	751
Eco88I	CYCGRG	1 cut(s)	92
Eco91I	GGTNACC	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	730
EcoRII	CCWGG	2 cut(s)	22, 154
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	3 cut(s)	15, 314, 395
FatI	CATG	3 cut(s)	11, 310, 391
FauI	CCCGC	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	418
FokI	GGATG	2 cut(s)	24, 641
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	6
HapII	CCGG	2 cut(s)	286, 728
HgaI	GACGC	1 cut(s)	570
Hin1II	CATG	3 cut(s)	15, 314, 395
HinfI	GANTC	3 cut(s)	589, 623, 662
HpaII	CCGG	2 cut(s)	286, 728
HphI	GGTGA	2 cut(s)	426, 724
Hpy188I	TCNGA	2 cut(s)	684, 703
Hpy188III	TCNNGA	6 cut(s)	92, 94, 234, 556, 572, 647
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	4 cut(s)	80, 179, 344, 615
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	2 cut(s)	224, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	4 cut(s)	337, 681, 702, 786
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	3 cut(s)	15, 314, 395
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	139, 418
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	449
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	2 cut(s)	542, 730
MalI	GATC	2 cut(s)	141, 420
MboI	GATC	2 cut(s)	139, 418
MboII	GAAGA	5 cut(s)	62, 490, 502, 600, 618
MhlI	GDGCHC	2 cut(s)	57, 361
MluCI	AATT	5 cut(s)	134, 379, 439, 496, 755
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	30, 563, 571, 685, 690
Mph1103I	ATGCAT	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	2 cut(s)	474, 687
MspI	CCGG	2 cut(s)	286, 728
MspR9I	CCNGG	2 cut(s)	24, 156
MvaI	CCWGG	2 cut(s)	24, 156
MvnI	CGCG	3 cut(s)	468, 557, 573
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	139, 418
NlaIII	CATG	3 cut(s)	15, 314, 395
NmuCI	GTSAC	1 cut(s)	730
NruI	TCGCGA	2 cut(s)	557, 573
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	589, 662
PflMI	CCANNNNNTGG	1 cut(s)	751
PfoI	TCCNGGA	1 cut(s)	22
PleI	GAGTC	1 cut(s)	617
PmaCI	CACGTG	1 cut(s)	751
PmlI	CACGTG	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	617
Ppu21I	YACGTR	1 cut(s)	751
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	22, 154
PspCI	CACGTG	1 cut(s)	751
PspEI	GGTNACC	1 cut(s)	730
PspGI	CCWGG	2 cut(s)	22, 154
RruI	TCGCGA	2 cut(s)	557, 573
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	474, 687
Sau3AI	GATC	2 cut(s)	139, 418
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	2 cut(s)	24, 156
SduI	GDGCHC	2 cut(s)	57, 361
Sfr274I	CTCGAG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	70, 92
SmoI	CTYRAG	2 cut(s)	70, 92
Sse9I	AATT	5 cut(s)	134, 379, 439, 496, 755
SsiI	CCGC	2 cut(s)	257, 761
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	22, 154
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	4 cut(s)	93, 123, 235, 500
TasI	AATT	5 cut(s)	134, 379, 439, 496, 755
TfiI	GAWTC	2 cut(s)	589, 662
Tru1I	TTAA	2 cut(s)	474, 687
Tru9I	TTAA	2 cut(s)	474, 687
TseFI	GTSAC	1 cut(s)	730
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	7 cut(s)	26, 63, 363, 408, 498, 591, 643
Van91I	CCANNNNNTGG	1 cut(s)	751
XapI	RAATTY	4 cut(s)	134, 439, 496, 755
XceI	RCATGY	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.