Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

26040589 .. 26041787

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAAGTGAAAGGAGTTTTTGCTTTGTGCCGTGTTGTTAAAAAGAAAGAGCATACACAGAAGGCAAATGATTCCAATGGAGAACCCAAGGCTAAGACGACCGGAAGTACTTCGAGCAATGGGGATTTGACCTCAACAAGAAACTCGAATGAGACCTTGAGCATCTCTGCTGGAATGTCATCTCAAGTGAACTACCAGCATGACGAGAGTCGCCATTCAAGCCATACTACTTCTCCATATGAAGTCTCTCCAATGGCAGAGTTTGAGCCAGCCCCAAGAGGCACCAATCCTGCAGACTTCTGGATCTCACCTGACTTAATTCTTGATTCTTCAAAGGATTACCCACAGTTACAAGGAGCTGTGCCTAATTACTTCCCCCAGTACGAGTTTCCAAGCACAATGTCACCATGGCAGTCATATGAACACACTGAGATTTCGCCTAGTTCATCATACTCAAATTTTGGAGACTTCCAAATGGCAGATGATATGAATCAAATGGCCAGCATGTCACCTTTCTCAGGACACACAGACTACATGGGTTATTGTGGAAATGAGGGATTGCAATTTGAAGGTTTTGACCAGACTAGTACAGTGAGATATCCAAATCACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

204

Amino Acids

22.71

Weight (kDa)

5.02

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	3 cut(s)	109, 383, 589
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	219, 333, 569
AhlI	ACTAGT	1 cut(s)	584
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw26I	GTCTC	3 cut(s)	146, 250, 459
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	498
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	109
AsuHPI	GGTGA	3 cut(s)	300, 396, 501
BalI	TGGCCA	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	15
BcoDI	GTCTC	3 cut(s)	146, 250, 459
BcuI	ACTAGT	1 cut(s)	584
BfaI	CTAG	2 cut(s)	441, 585
BfmI	CTRYAG	1 cut(s)	291
BmcAI	AGTACT	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	373
BoxI	GACNNNNGTC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	168, 178
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	87, 407
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	87, 407
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	420, 531
BseNI	ACTGG	1 cut(s)	379
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	3 cut(s)	146, 250, 459
BsnI	GGCC	1 cut(s)	500
Bso31I	GGTCTC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	407
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	2 cut(s)	421, 530
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	87, 407
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	87, 407
Bst4CI	ACNGT	2 cut(s)	348, 592
BstC8I	GCNNGC	2 cut(s)	270, 502
BstDEI	CTNAG	3 cut(s)	93, 429, 517
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	3 cut(s)	146, 250, 459
BstMBI	GATC	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	508
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	407
BtsIMutI	CAGTG	2 cut(s)	426, 597
Cac8I	GCNNGC	2 cut(s)	270, 502
Csp6I	GTAC	3 cut(s)	108, 382, 588
CviAII	CATG	4 cut(s)	200, 408, 505, 535
CviJI	RGCY	6 cut(s)	92, 222, 268, 272, 359, 500
CviKI_1	RGCY	6 cut(s)	92, 222, 268, 272, 359, 500
CviQI	GTAC	3 cut(s)	108, 382, 588
DdeI	CTNAG	3 cut(s)	93, 429, 517
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	498
Eco130I	CCWWGG	2 cut(s)	87, 407
Eco31I	GGTCTC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRV	GATATC	1 cut(s)	599
EcoT14I	CCWWGG	2 cut(s)	87, 407
ErhI	CCWWGG	2 cut(s)	87, 407
FaeI	CATG	4 cut(s)	203, 411, 508, 538
FatI	CATG	4 cut(s)	199, 407, 504, 534
FauNDI	CATATG	2 cut(s)	238, 418
FspBI	CTAG	2 cut(s)	441, 585
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	4 cut(s)	203, 411, 508, 538
HinfI	GANTC	4 cut(s)	71, 208, 326, 490
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	300, 396, 501
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	614
Hpy188III	TCNNGA	3 cut(s)	301, 323, 519
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	55, 563
HpyCH4III	ACNGT	2 cut(s)	348, 592
HpyCH4V	TGCA	2 cut(s)	293, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	3 cut(s)	93, 429, 517
Hsp92II	CATG	4 cut(s)	203, 411, 508, 538
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	356
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	441, 585
MaeIII	GTNAC	3 cut(s)	348, 402, 507
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	1 cut(s)	321
MflI	RGATCY	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	4 cut(s)	318, 367, 457, 563
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	3 cut(s)	142, 272, 547
Mox20I	TGGCCA	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	2 cut(s)	39, 317
Msp20I	TGGCCA	1 cut(s)	500
MspI	CCGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	407
NdeI	CATATG	2 cut(s)	238, 418
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	4 cut(s)	203, 411, 508, 538
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	2 cut(s)	402, 507
NspI	RCATGY	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	71, 326, 490
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	3 cut(s)	109, 383, 589
RsaNI	GTAC	3 cut(s)	108, 382, 588
SaqAI	TTAA	2 cut(s)	39, 317
Sau3AI	GATC	1 cut(s)	303
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	217
SetI	ASST	6 cut(s)	134, 158, 313, 361, 514, 574
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	291
SmlI	CTYRAG	2 cut(s)	157, 183
SmoI	CTYRAG	2 cut(s)	157, 183
SpeI	ACTAGT	1 cut(s)	584
Sse9I	AATT	4 cut(s)	318, 367, 457, 563
SspMI	CTAG	2 cut(s)	441, 585
StyI	CCWWGG	2 cut(s)	87, 407
TaaI	ACNGT	2 cut(s)	348, 592
TaqI	TCGA	2 cut(s)	113, 146
TasI	AATT	4 cut(s)	318, 367, 457, 563
TatI	WGTACW	2 cut(s)	107, 587
TfiI	GAWTC	3 cut(s)	71, 326, 490
Tru1I	TTAA	2 cut(s)	39, 317
Tru9I	TTAA	2 cut(s)	39, 317
TscAI	CASTG	2 cut(s)	433, 597
TseFI	GTSAC	2 cut(s)	402, 507
Tsp45I	GTSAC	2 cut(s)	402, 507
TspDTI	ATGAA	5 cut(s)	17, 255, 435, 435, 503
TspRI	CASTG	2 cut(s)	433, 597
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	2 cut(s)	441, 585
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.