Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Reverse (-)

1144743 .. 1147462

Gene Structure 2720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGAGGGGCATCACTACCACCAGGTTTTAGATTCCACCCAACTGATGAGGAATTAGTGGGATACTATCTTAGTAGAAAAGTGGAGGGGCTTGAATTTGAGCTCGAAGTAATTCCTGTGATCGATTTGTACAAATTTGACCCCTGGGAGCTGCCAGAGAAATCGTTTCTCCCTAGGCGAGATATGGAATGGTTCTTCTTCTGTCCAAGGGATCGAAAGTACCCGAATGGCTCAAGAACAAATCGAGCTACCAAATCTGGCTACTGGAAAGCCACTGGAAAAGACCGCAAGGTTGTCTGCCAATCTAGTGTTACTGGATACCGCAAGACCCTTGTTTTCTATCGTGGCCGTGCTCCTTTAGGTGATCGAACGGAGTGGATTATGCATGAGTACCGCCTCAATGATGATTTTGCTCAGGGGTCACCAGGTCTCCAGGGAGTTTTTGCTTTGTGCCGTGTTGTTAAACAGAAAGAGCATACACAGAAGGCAAATGATTCCAATGGAGAACCCAAGGCTAAGACGACTGGAAGTACTTCGAGCAATGGGGATTTGACCTCAACAAGAAACTCGAATGAGACCATGAGCATCTCTGCTGGAATGTCATCTCAAGTGAACTACCAGCATGACGAGAGTCGCCATTCAAGCCATACTACTTCTCCATATGAAGTCTCTCCAATGGCAGAGTTTGAGCCAGCTCCAAGAGGCACCAATCCTGCAGACTTCTGGATCTCACCTGACTTAATTCTTGATTCTTCAAAGGACTACCCACAGTTACAAGGAGCTGTGCCTAATTACTTCCCCCAGTACGAGTTTCCAAGCACAATGTCACCATGGCAGTCATATGAACACACTGAGATTTCGCCTAGTTCATCATACTCAAATTTTGGAGACTTCCAAATGGCAGATGATATGAATCAAATGCCCAGCATGTCACCTTTCTCAGGACACACAGACTACATGGGTTATTGTGGAAATGAGGGATTGCAATTTGAAGGTTTTGACCAGACTAGTACAGTGAGATATCCAAATCACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

345

Amino Acids

39.24

Weight (kDa)

5.43

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	6.7e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	704
AciI	CCGC	3 cut(s)	286, 322, 394
AclWI	GGATC	2 cut(s)	219, 734
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	3 cut(s)	95, 134, 880
AfaI	GTAC	6 cut(s)	131, 221, 392, 532, 806, 1012
AfiI	CCNNNNNNNGG	1 cut(s)	941
AgsI	TTSAA	4 cut(s)	95, 642, 756, 992
AhlI	ACTAGT	1 cut(s)	1007
AjnI	CCWGG	4 cut(s)	22, 143, 424, 432
AluBI	AGCT	5 cut(s)	103, 151, 248, 695, 782
AluI	AGCT	5 cut(s)	103, 151, 248, 695, 782
Alw21I	GWGCWC	2 cut(s)	105, 355
Alw26I	GTCTC	4 cut(s)	434, 569, 673, 882
AlwI	GGATC	2 cut(s)	219, 734
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	3 cut(s)	95, 134, 880
Asp700I	GAANNNNTTC	2 cut(s)	111, 532
AspA2I	CCTAGG	1 cut(s)	173
AsuHPI	GGTGA	5 cut(s)	374, 414, 723, 819, 924
AvrII	CCTAGG	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	105, 355
BbvI	GCAGC	1 cut(s)	138
BceAI	ACGGC	2 cut(s)	333, 438
BciT130I	CCWGG	4 cut(s)	24, 145, 426, 434
BciVI	GTATCC	2 cut(s)	56, 311
BcoDI	GTCTC	4 cut(s)	434, 569, 673, 882
BcuI	ACTAGT	1 cut(s)	1007
BfaI	CTAG	4 cut(s)	174, 306, 864, 1008
BfmI	CTRYAG	1 cut(s)	714
BfuI	GTATCC	2 cut(s)	56, 311
BisI	GCNGC	1 cut(s)	152
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	153
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	4 cut(s)	24, 145, 426, 434
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	4 cut(s)	24, 145, 426, 434
BmrI	ACTGGG	1 cut(s)	796
BmsI	GCATC	2 cut(s)	20, 594
BmuI	ACTGGG	1 cut(s)	796
BoxI	GACNNNNGTC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	217, 591
Bsa29I	ATCGAT	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	912
BsaI	GGTCTC	2 cut(s)	434, 569
BsaJI	CCNNGG	7 cut(s)	143, 144, 173, 206, 433, 510, 830
BsaXI	ACNNNNNCTCC	4 cut(s)	414, 444, 640, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	5 cut(s)	269, 280, 319, 529, 802
Bse3DI	GCAATG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	912
BseBI	CCWGG	4 cut(s)	24, 145, 426, 434
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	7 cut(s)	143, 144, 173, 206, 433, 510, 830
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	428, 843, 954
BseNI	ACTGG	5 cut(s)	269, 280, 319, 529, 802
BseXI	GCAGC	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	923
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	704
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	105, 355
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	4 cut(s)	434, 569, 673, 882
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	2 cut(s)	434, 569
Bsp1286I	GDGCHC	2 cut(s)	105, 355
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	120, 211, 364, 726
Bsp19I	CCATGG	1 cut(s)	830
BspACI	CCGC	3 cut(s)	286, 322, 394
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	3 cut(s)	427, 844, 953
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	706
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	2 cut(s)	219, 734
BspT107I	GGYRCC	1 cut(s)	704
BspTNI	GGTCTC	2 cut(s)	434, 569
BsrDI	GCAATG	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	5 cut(s)	269, 280, 319, 529, 802
BssECI	CCNNGG	7 cut(s)	143, 144, 173, 206, 433, 510, 830
BssMI	GATC	4 cut(s)	120, 211, 364, 726
BssT1I	CCWWGG	4 cut(s)	173, 206, 510, 830
Bst2UI	CCWGG	4 cut(s)	24, 145, 426, 434
Bst4CI	ACNGT	2 cut(s)	771, 1015
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	5 cut(s)	71, 414, 516, 852, 940
BstDSI	CCRYGG	1 cut(s)	830
BstEII	GGTNACC	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	939
BstKTI	GATC	4 cut(s)	123, 214, 367, 729
BstMAI	GTCTC	4 cut(s)	434, 569, 673, 882
BstMBI	GATC	4 cut(s)	120, 211, 364, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	642
BstNI	CCWGG	4 cut(s)	24, 145, 426, 434
BstNSI	RCATGY	1 cut(s)	931
BstPAI	GACNNNNGTC	1 cut(s)	630
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	4 cut(s)	22, 143, 424, 432
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	726
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	2 cut(s)	56, 311
BsuRI	GGCC	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	830
BtsIMutI	CAGTG	3 cut(s)	273, 849, 1020
Cac8I	GCNNGC	1 cut(s)	693
ClaI	ATCGAT	1 cut(s)	123
CsiI	ACCWGGT	2 cut(s)	22, 424
Csp6I	GTAC	6 cut(s)	130, 220, 391, 531, 805, 1011
CviAII	CATG	6 cut(s)	386, 580, 623, 831, 928, 958
CviQI	GTAC	6 cut(s)	130, 220, 391, 531, 805, 1011
DdeI	CTNAG	5 cut(s)	71, 414, 516, 852, 940
DpnI	GATC	4 cut(s)	122, 213, 366, 728
DpnII	GATC	4 cut(s)	120, 211, 364, 726
EaeI	YGGCCR	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	4 cut(s)	173, 206, 510, 830
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	434, 569
Eco32I	GATATC	1 cut(s)	1022
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	939
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	4 cut(s)	22, 143, 424, 432
EcoRV	GATATC	1 cut(s)	1022
EcoT14I	CCWWGG	4 cut(s)	173, 206, 510, 830
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	4 cut(s)	173, 206, 510, 830
FaeI	CATG	6 cut(s)	389, 583, 626, 834, 931, 961
FatI	CATG	6 cut(s)	385, 579, 622, 830, 927, 957
FauNDI	CATATG	2 cut(s)	661, 841
Fnu4HI	GCNGC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	4 cut(s)	174, 306, 864, 1008
GluI	GCNGC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	348
Hin1II	CATG	6 cut(s)	389, 583, 626, 834, 931, 961
HinfI	GANTC	5 cut(s)	33, 494, 631, 749, 913
HphI	GGTGA	5 cut(s)	374, 414, 723, 819, 924
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	1 cut(s)	1037
Hpy188III	TCNNGA	4 cut(s)	234, 724, 746, 942
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	2 cut(s)	478, 986
HpyCH4III	ACNGT	2 cut(s)	771, 1015
HpyCH4V	TGCA	3 cut(s)	385, 716, 985
HpyF10VI	GCNNNNNNNGC	1 cut(s)	642
HpyF3I	CTNAG	5 cut(s)	71, 414, 516, 852, 940
Hsp92II	CATG	6 cut(s)	389, 583, 626, 834, 931, 961
Kzo9I	GATC	4 cut(s)	120, 211, 364, 726
LmnI	GCTCC	4 cut(s)	148, 358, 700, 779
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	2 cut(s)	20, 594
MabI	ACCWGGT	2 cut(s)	22, 424
MaeI	CTAG	4 cut(s)	174, 306, 864, 1008
MaeIII	GTNAC	5 cut(s)	310, 420, 771, 825, 930
MalI	GATC	4 cut(s)	122, 213, 366, 728
MboI	GATC	4 cut(s)	120, 211, 364, 726
MboII	GAAGA	3 cut(s)	187, 190, 744
MflI	RGATCY	1 cut(s)	726
MhlI	GDGCHC	2 cut(s)	105, 355
MluCI	AATT	8 cut(s)	53, 95, 111, 134, 741, 790, 880, 986
MlyI	GAGTC	1 cut(s)	640
MnlI	CCTC	6 cut(s)	43, 79, 407, 565, 695, 970
Mph1103I	ATGCAT	1 cut(s)	387
MroXI	GAANNNNTTC	2 cut(s)	111, 532
MseI	TTAA	2 cut(s)	462, 740
MspR9I	CCNGG	4 cut(s)	24, 145, 426, 434
MvaI	CCWGG	4 cut(s)	24, 145, 426, 434
MwoI	GCNNNNNNNGC	1 cut(s)	642
NcoI	CCATGG	1 cut(s)	830
NdeI	CATATG	2 cut(s)	661, 841
NdeII	GATC	4 cut(s)	120, 211, 364, 726
NlaIII	CATG	6 cut(s)	389, 583, 626, 834, 931, 961
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	3 cut(s)	420, 825, 930
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	931
PasI	CCCWGGG	1 cut(s)	144
PdmI	GAANNNNTTC	2 cut(s)	111, 532
PfeI	GAWTC	4 cut(s)	33, 494, 749, 913
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PshAI	GACNNNNGTC	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	4 cut(s)	22, 143, 424, 432
PspEI	GGTNACC	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	4 cut(s)	22, 143, 424, 432
PspN4I	GGNNCC	1 cut(s)	706
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	1 cut(s)	726
RsaI	GTAC	6 cut(s)	131, 221, 392, 532, 806, 1012
RsaNI	GTAC	6 cut(s)	130, 220, 391, 531, 805, 1011
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	462, 740
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	4 cut(s)	120, 211, 364, 726
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	4 cut(s)	24, 145, 426, 434
SduI	GDGCHC	2 cut(s)	105, 355
SexAI	ACCWGGT	2 cut(s)	22, 424
SfaNI	GCATC	2 cut(s)	20, 594
SfcI	CTRYAG	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	232, 606
SmoI	CTYRAG	2 cut(s)	232, 606
SpeI	ACTAGT	1 cut(s)	1007
Sse9I	AATT	8 cut(s)	53, 95, 111, 134, 741, 790, 880, 986
SsiI	CCGC	3 cut(s)	286, 322, 394
SspMI	CTAG	4 cut(s)	174, 306, 864, 1008
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	4 cut(s)	22, 143, 424, 432
StyI	CCWWGG	4 cut(s)	173, 206, 510, 830
TaaI	ACNGT	2 cut(s)	771, 1015
TaqI	TCGA	7 cut(s)	105, 123, 214, 244, 367, 536, 569
TasI	AATT	8 cut(s)	53, 95, 111, 134, 741, 790, 880, 986
TatI	WGTACW	3 cut(s)	129, 530, 1010
TfiI	GAWTC	4 cut(s)	33, 494, 749, 913
Tru1I	TTAA	2 cut(s)	462, 740
Tru9I	TTAA	2 cut(s)	462, 740
TscAI	CASTG	3 cut(s)	280, 856, 1020
TseFI	GTSAC	3 cut(s)	420, 825, 930
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	3 cut(s)	420, 825, 930
TspDTI	ATGAA	4 cut(s)	678, 858, 858, 926
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	3 cut(s)	280, 856, 1020
XagI	CCTNNNNNAGG	1 cut(s)	939
XapI	RAATTY	3 cut(s)	95, 134, 880
XceI	RCATGY	1 cut(s)	931
XmaJI	CCTAGG	1 cut(s)	173
XmnI	GAANNNNTTC	2 cut(s)	111, 532
XspI	CTAG	4 cut(s)	174, 306, 864, 1008
ZrmI	AGTACT	1 cut(s)	532
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.