Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Reverse (-)

38275920 .. 38291205

Gene Structure 15286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

ATGAAGCGCTTCATCTACATAAACGATGATGATTCATCGCACTATCCTTACTGTGACAATCGTATATCGAATAGAAAGTACACTGTGTTGAACTTTCTCCCCAAGAATTTATGGGAACAATTCAGCCGCTTCATGAATCAGTACTTTTTGTTGATTGCTTGCCTTCAGCTATGGTCGCTTATTACTCCGGTAAATCCTGCCAGCACGTGGGGTCCACTTATCTTCATTTTTGCAGTCTCTGCATCAAAAGAGGCCTGGGATGATTACAACCGATATCTCTCAGACAAGAAGGCAAATGAGAAAGAAGTCTGGGTCGTCAGGCATGGCATCAAAAAACATATACAAGCGCAAGATATTCGTCTTGGTAACATAGTTTGGCTGCGGGAGAATGATGAAGTGCCATGTGACCTAGTTTTGATTGGTACCTCAGAAGCACAAGGCCTATGCTATATAGAGACTGCAGCCCTAGATGGAGAAACTGATCTGAAGACCAGGGTCATACCACCAGCTTGTATGGGGATAGATCTTGAATTGTTGCACAAAATTAAGGGTGTAATTGAGTGCCCTAATCCTGATAAGGACATTCGAAGATTTGATGCAAATATGCGGTTGTTTCCCCCATTTATTGATAATGACATCTGCCCATTAACCATAAAGAATACTATTCTTCAGTCATGTTACTTGCGAAATACAGAGTGGGCCTGTGGAGTAGCAGTCTACACTGGCAATGAAACCAAGCTTGGTATGACTAGGGGAATTCCTGAGCCAAAGCTTACAGCTGTCGATGCTATGATTGACAAGTTGACAGGAGCTATATTTGTTTTCCAAGTAGTGGTGGTTATGGTTCTAGGCGTTGCCGGTAATGTCTGGAAGGATACAGAAGCAAGGAAGCAATGGTATGTTCTATATCCAGAGGAAGGTCCCTGGTACGAACTATTAGTAATCCCTCTTCGCTTTGAACTACTATGTTCCATCATGATACCCATATCAATTAAGGTATCTCTCGACCTTGTCAAGAGCTTGTACGCAAAGTTTATTGATTGGGATAGTAAAATGATTGACCGAGAAACGGCTACTCCAGCCCATGCAACAAATACAGCAATAAGTGAAGACCTGGGACAAGTTGAGTACATTCTGACTGATAAAACTGGTACCCTAACGGAAAATAAAATGATATTTAGAAGGTGTTGTATCAATGGCATTTACTATGGGAATGAGAATGGAAATGCCTTAAAAGATGAGGAGCTCATTGATGCTATTTCCAGTGGGTCTTCTGATGTTATACGTTTCCTTACAGTTATGGCAATATGTAATACAGTCATACCCATTCAAAGCAAAAATGGAAGTATCGTGTACAAGGCACAATCTCAAGATGAGGATGCTCTTGTTCATGCTGCTGCCCAGCTACATATGGTTTTTGTCAATAAAAATGCTAACATTCTTGAGATCAAATTCAACGGTTCTACAGTTCAGTATGAAGCCTTGGATATTCTGGAGTTCACTTCTGATAGAAAAAGAATGTCAGTAGTGGTAAAGGATTGCCAGAATGGAAGGATTATTCTTTTATCAAAGGGAGCAGATGAATCAATTCTTCCTTATGCATGTGCTGGACAGCAAACAAGGACTATTATTGAAGCTGTTGAGCAATATGCTCAGTTGGGACTACGGACACTGTGTCTAGCTTGGCGTGAACTGAAAGAAGAGGAATATCGAGAATGGTCTTTGATGTATAAAGAGGCTAGCAGCACATTGGTTGATAGAGAGTGGAGGCTAGCGGAGGTCTGTCAAAGATTAGAACATGATTTTGAAATACTTGGAGTTACTGCAATAGAGGATCGCCTACAGGATGGTGTACCAGAGACAATTGAGACGCTGAGGAAAGCTGGCATAAATTTTTGGATGCTTACTGGAGACAAGCAGAACACTGCCATACAGATAGCTCTTTCATGCAATTTCATTTCCCCAGAGCCAAAAGGCCAGCTTTTGTTACTTGATGGGAAAACTGAAGATGAAGTTCGTAGAAGTTTAGAGAGAGTTTTACTCACAATGCGGATAACAACTTCAGAACCTAAGGATGTGGCATTTGTAATTGATGGCTGGTCCCTTGAAATTGCACTGAAGCATTATCGGAAATCTTTTACTGAGTTGGCAATATTGTCAAGGACTGCTATATGTTGTCGCGTGACACCATCACAGAAAGCTCAGCTTGTGGAGATTTTAAAATCATGTGACTATAGAACGTTGGCCATTGGGGATGGTGGGAATGATGTGAGAATGATACAACAAGCAGACATTGGTGTTGGCATTAGTGGGAGAGAAGGACTGCAGGCAGCTAGGGCCGCTGATTATAGTATTGGGAAGTTCATGTTCCTGAAAAGATTAATACTTGTTCATGGGCGTTACTCATACAACCGCACAGCATTTCTGTCTCAGTATTCTTTTTACAAGTCATTGGTCGTATGTTTCATCCAGATTTTTTTCTCTTTTATTTCAGGGGTCTCTGGAACCAGTCTTTTCAATTCTGTTAGCTTGATGGCTTATAATGTCTTCTACACCAGTGTTCCTGTTCTAGCCAGCGTCCTTGATAAAGATCTTAGTGAGGAAACTGTTATGCAGCATCCACAGATTCTATTCTATTGCCAAGCGGGAAGGCTTCTGAATCCTAGCACATTTGCTGGATGGTTTGGGCGATCCCTTTTCCACGCAATTGTTGTATTTGTGATCAGCATACATGCTTATGCCTATGAAAAAAGTGAAATGGAGGAGGTTTCAATGGTGGCGCTCTCTGGATGTATTTGGTTGCAGGCTTTTGTAATGGCATTAGAGACAAACTCCTTTACTATACTCCAACATCTTGCTATATGGGGGAATTTAGCTGCCTTCTACATCATCAACTGGATCTTCAGTGCCATTCCAGGATCAGGGATGTATACAATTATGTTCCGCTTGTGTAGAGAGCCTTCTTACTGGATAACTATCTTGCTCATAGTTGCAGCAGGAATGGGCCCGATTCTAGCTTTGAAGTACTTCAGGTATACATACAGACCAAGCAAAATCAATACACTACAGCAAGCTGAACGTTTGGGTGGGCCTATACTGTCTATTGGGAGCATTGAGCCACAAACAAGAAGCATAGAAAAAGAAGTTTCTCCATTATCAATTACTCAACCCAAGAACAGAAATCCAATTTTCGAACCTCTATTATCAGATTCACCCAATGCTACCCGAAGATCTTTTGGTTCAGGAACACCTTTTGATTTCTTTCAATCACAGTCCAGATTGTCCATGTCTAACTACTCAAGAAACAAGGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

1105

Amino Acids

125.11

Weight (kDa)

5.94

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	5 - 70	3e-24	Phospholipid-translocating ATPase N-terminal
E1-E2_ATPase	PF00122	100 - 162	3.3e-06	P-type ATPase actuator domain
Cation_ATPase	PF13246	427 - 615	6.1e-17	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	778 - 1017	6.3e-65	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2541
Acc65I	GGTACC	2 cut(s)	422, 1151
AccB1I	GGYRCC	2 cut(s)	422, 1151
AccB7I	CCANNNNNTGG	2 cut(s)	207, 832
AccI	GTMKAC	3 cut(s)	717, 2930, 3035
AccII	CGCG	1 cut(s)	2181
AciI	CCGC	9 cut(s)	127, 382, 607, 1775, 2050, 2340, 2413, 2645, 2944
AclI	AACGTT	2 cut(s)	2240, 3079
AclWI	GGATC	4 cut(s)	1842, 2685, 2906, 2926
AcoI	YGGCCR	1 cut(s)	2244
AcsI	RAATTY	5 cut(s)	106, 756, 1451, 1891, 2869
AcuI	CTGAAG	8 cut(s)	149, 506, 653, 2025, 2046, 2138, 2887, 3013
AcvI	CACGTG	1 cut(s)	207
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	5 cut(s)	207, 832, 917, 1069, 2921
AhdI	GACNNNNNGTC	1 cut(s)	1674
AjnI	CCWGG	5 cut(s)	254, 491, 923, 1113, 2914
AjuI	GAANNNNNNNTTGG	2 cut(s)	723, 755
Alw21I	GWGCWC	1 cut(s)	1248
Alw26I	GTCTC	8 cut(s)	241, 449, 1853, 1862, 1905, 2433, 2503, 2819
AlwI	GGATC	4 cut(s)	1842, 2685, 2906, 2926
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	8 cut(s)	252, 439, 699, 1975, 2244, 2337, 3004, 3089
ApaI	GGGCCC	1 cut(s)	3008
ApeKI	GCWGC	9 cut(s)	379, 461, 1394, 1397, 1743, 2330, 2614, 2876, 2993
ApoI	RAATTY	5 cut(s)	106, 756, 1451, 1891, 2869
AseI	ATTAAT	1 cut(s)	2381
Asp700I	GAANNNNTTC	3 cut(s)	8, 1587, 3026
Asp718I	GGTACC	2 cut(s)	422, 1151
AspLEI	GCGC	3 cut(s)	9, 349, 2782
AspS9I	GGNCC	8 cut(s)	212, 699, 920, 2100, 2337, 3004, 3005, 3089
AsuHPI	GGTGA	1 cut(s)	3204
AsuII	TTCGAA	2 cut(s)	586, 3192
AsuNHI	GCTAGC	2 cut(s)	1739, 1771
AvaII	GGWCC	3 cut(s)	212, 920, 2100
AxyI	CCTNAGG	1 cut(s)	2070
BaeGI	GKGCMC	2 cut(s)	566, 3008
BalI	TGGCCA	1 cut(s)	2246
BanI	GGYRCC	2 cut(s)	422, 1151
BanII	GRGCYC	2 cut(s)	1248, 3008
BarI	GAAGNNNNNNTAC	4 cut(s)	933, 965, 2944, 2976
BbrPI	CACGTG	1 cut(s)	207
BbsI	GAAGAC	4 cut(s)	494, 1116, 1263, 2539
Bbv12I	GWGCWC	1 cut(s)	1248
BbvCI	CCTCAGC	1 cut(s)	1874
BbvI	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
BccI	CCATC	9 cut(s)	464, 980, 1841, 1988, 2087, 2197, 2249, 2527, 2673
BceAI	ACGGC	1 cut(s)	1086
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	5 cut(s)	256, 493, 925, 1115, 2916
BciVI	GTATCC	1 cut(s)	868
BclI	TGATCA	1 cut(s)	2721
BcoDI	GTCTC	8 cut(s)	241, 449, 1853, 1862, 1905, 2433, 2503, 2819
BfmI	CTRYAG	6 cut(s)	459, 1464, 1841, 2233, 2324, 3065
BfoI	RGCGCY	2 cut(s)	10, 2783
BfuI	GTATCC	1 cut(s)	868
BglII	AGATCT	3 cut(s)	523, 2590, 3230
BlpI	GCTNAGC	1 cut(s)	2202
BmcAI	AGTACT	2 cut(s)	143, 3026
Bme1390I	CCNGG	5 cut(s)	256, 493, 925, 1115, 2916
Bme18I	GGWCC	3 cut(s)	212, 920, 2100
BmeRI	GACNNNNNGTC	1 cut(s)	1674
BmgT120I	GGNCC	8 cut(s)	212, 699, 920, 2100, 2337, 3004, 3005, 3089
BmiI	GGNNCC	7 cut(s)	213, 424, 922, 1153, 2102, 2506, 3006
BmrFI	CCNGG	5 cut(s)	256, 493, 925, 1115, 2916
BmsI	GCATC	8 cut(s)	251, 336, 586, 775, 1243, 1369, 1890, 2626
BmtI	GCTAGC	2 cut(s)	1743, 1775
BoxI	GACNNNNGTC	1 cut(s)	494
BpiI	GAAGAC	4 cut(s)	494, 1116, 1263, 2539
BplI	GAGNNNNNCTC	4 cut(s)	2025, 2057, 2816, 2848
BpmI	CTGGAG	3 cut(s)	1062, 1514, 1929
Bpu10I	CCTNAGC	2 cut(s)	762, 1874
Bpu1102I	GCTNAGC	1 cut(s)	2202
Bpu14I	TTCGAA	2 cut(s)	586, 3192
BpuEI	CTTGAG	3 cut(s)	1353, 1463, 3283
BsaAI	YACGTR	1 cut(s)	207
BsaBI	GATNNNNATC	2 cut(s)	2589, 2975
BsaI	GGTCTC	1 cut(s)	2503
BsaJI	CCNNGG	5 cut(s)	255, 492, 923, 1114, 1482
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	699, 729, 1060, 1090
Bsc4I	CCNNNNNNNGG	5 cut(s)	207, 832, 917, 1069, 2921
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	8 cut(s)	727, 1153, 1263, 1912, 2508, 2556, 2900, 2972
Bse21I	CCTNAGG	1 cut(s)	2070
Bse3DI	GCAATG	2 cut(s)	733, 899
Bse8I	GATNNNNATC	2 cut(s)	2589, 2975
BseBI	CCWGG	5 cut(s)	256, 493, 925, 1115, 2916
BseDI	CCNNGG	5 cut(s)	255, 492, 923, 1114, 1482
BseJI	GATNNNNATC	2 cut(s)	2589, 2975
BseLI	CCNNNNNNNGG	5 cut(s)	207, 832, 917, 1069, 2921
BseMI	GCAATG	2 cut(s)	733, 899
BseMII	CTCAG	8 cut(s)	294, 441, 753, 1667, 1865, 2133, 2216, 2444
BseNI	ACTGG	8 cut(s)	727, 1153, 1263, 1912, 2508, 2556, 2900, 2972
BseRI	GAGGAG	2 cut(s)	1256, 2777
BseSI	GKGCMC	2 cut(s)	566, 3008
BseXI	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
BseYI	CCCAGC	1 cut(s)	1401
Bsh1236I	CGCG	1 cut(s)	2181
BshFI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
BshNI	GGYRCC	2 cut(s)	422, 1151
BsiHKAI	GWGCWC	1 cut(s)	1248
BsiSI	CCGG	2 cut(s)	188, 858
BslFI	GGGAC	4 cut(s)	906, 1131, 1674, 2086
BslI	CCNNNNNNNGG	5 cut(s)	207, 832, 917, 1069, 2921
BsmAI	GTCTC	8 cut(s)	241, 449, 1853, 1862, 1905, 2433, 2503, 2819
BsmBI	CGTCTC	1 cut(s)	1862
BsmFI	GGGAC	4 cut(s)	906, 1131, 1674, 2086
BsnI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
Bso31I	GGTCTC	1 cut(s)	2503
Bsp119I	TTCGAA	2 cut(s)	586, 3192
Bsp120I	GGGCCC	1 cut(s)	3004
Bsp1286I	GDGCHC	3 cut(s)	566, 1248, 3008
Bsp1407I	TGTACA	1 cut(s)	1353
Bsp1720I	GCTNAGC	1 cut(s)	2202
BspACI	CCGC	9 cut(s)	127, 382, 607, 1775, 2050, 2340, 2413, 2645, 2944
BspANI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
BspCNI	CTCAG	8 cut(s)	293, 440, 754, 1666, 1866, 2134, 2215, 2443
BspFNI	CGCG	1 cut(s)	2181
BspHI	TCATGA	2 cut(s)	132, 975
BspLI	GGNNCC	7 cut(s)	213, 424, 922, 1153, 2102, 2506, 3006
BspMAI	CTGCAG	2 cut(s)	463, 2328
BspOI	GCTAGC	2 cut(s)	1743, 1775
BspPI	GGATC	4 cut(s)	1842, 2685, 2906, 2926
BspT104I	TTCGAA	2 cut(s)	586, 3192
BspT107I	GGYRCC	2 cut(s)	422, 1151
BspTNI	GGTCTC	1 cut(s)	2503
BsrDI	GCAATG	2 cut(s)	733, 899
BsrFI	RCCGGY	1 cut(s)	857
BsrGI	TGTACA	1 cut(s)	1353
BsrI	ACTGG	8 cut(s)	727, 1153, 1263, 1912, 2508, 2556, 2900, 2972
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	5 cut(s)	255, 492, 923, 1114, 1482
BssNAI	GTATAC	2 cut(s)	2931, 3036
BssT1I	CCWWGG	1 cut(s)	1482
Bst1107I	GTATAC	2 cut(s)	2931, 3036
Bst2UI	CCWGG	5 cut(s)	256, 493, 925, 1115, 2916
Bst6I	CTCTTC	2 cut(s)	954, 1695
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	1353
BstBAI	YACGTR	1 cut(s)	207
BstBI	TTCGAA	2 cut(s)	586, 3192
BstFNI	CGCG	1 cut(s)	2181
BstH2I	RGCGCY	2 cut(s)	10, 2783
BstHHI	GCGC	3 cut(s)	9, 349, 2782
BstMAI	GTCTC	8 cut(s)	241, 449, 1853, 1862, 1905, 2433, 2503, 2819
BstMWI	GCNNNNNNNGC	6 cut(s)	175, 239, 785, 1079, 2336, 2339
BstNI	CCWGG	5 cut(s)	256, 493, 925, 1115, 2916
BstNSI	RCATGY	2 cut(s)	1605, 2735
BstPAI	GACNNNNGTC	1 cut(s)	494
BstSCI	CCNGG	5 cut(s)	254, 491, 923, 1113, 2914
BstSFI	CTRYAG	6 cut(s)	459, 1464, 1841, 2233, 2324, 3065
BstSLI	GKGCMC	2 cut(s)	566, 3008
BstUI	CGCG	1 cut(s)	2181
BstV1I	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
BstV2I	GAAGAC	4 cut(s)	494, 1116, 1263, 2539
BstX2I	RGATCY	4 cut(s)	523, 2590, 2898, 3230
BstYI	RGATCY	4 cut(s)	523, 2590, 2898, 3230
BstZ17I	GTATAC	2 cut(s)	2931, 3036
Bsu36I	CCTNAGG	1 cut(s)	2070
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
BtgZI	GCGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	1923
BtsIMutI	CAGTG	8 cut(s)	81, 720, 1270, 1670, 1923, 2114, 2563, 2911
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	2 cut(s)	132, 975
CfoI	GCGC	3 cut(s)	9, 349, 2782
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	8 cut(s)	212, 699, 920, 2100, 2337, 3004, 3005, 3089
CseI	GACGC	2 cut(s)	1879, 2566
DraI	TTTAAA	1 cut(s)	2220
DriI	GACNNNNNGTC	1 cut(s)	1674
EaeI	YGGCCR	1 cut(s)	2244
Eam1104I	CTCTTC	2 cut(s)	954, 1695
Eam1105I	GACNNNNNGTC	1 cut(s)	1674
EarI	CTCTTC	2 cut(s)	954, 1695
Ecl136II	GAGCTC	1 cut(s)	1246
Eco130I	CCWWGG	1 cut(s)	1482
Eco147I	AGGCCT	2 cut(s)	254, 441
Eco24I	GRGCYC	2 cut(s)	1248, 3008
Eco31I	GGTCTC	1 cut(s)	2503
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	3 cut(s)	212, 920, 2100
Eco47III	AGCGCT	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	1246
Eco57I	CTGAAG	8 cut(s)	149, 506, 653, 2025, 2046, 2138, 2887, 3013
Eco72I	CACGTG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	2070
EcoICRI	GAGCTC	1 cut(s)	1246
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	756
EcoRII	CCWGG	5 cut(s)	254, 491, 923, 1113, 2914
EcoRV	GATATC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	1482
EcoT22I	ATGCAT	1 cut(s)	1603
EcoT38I	GRGCYC	2 cut(s)	1248, 3008
ErhI	CCWWGG	1 cut(s)	1482
Esp3I	CGTCTC	1 cut(s)	1862
FalI	AAGNNNNNCTT	4 cut(s)	1965, 1997, 2190, 2222
FaqI	GGGAC	4 cut(s)	906, 1131, 1674, 2086
FauI	CCCGC	2 cut(s)	375, 2638
FauNDI	CATATG	1 cut(s)	1410
FbaI	TGATCA	1 cut(s)	2721
FblI	GTMKAC	3 cut(s)	717, 2930, 3035
FriOI	GRGCYC	2 cut(s)	1248, 3008
GlaI	GCGC	3 cut(s)	8, 348, 2781
GsaI	CCCAGC	1 cut(s)	1405
GsuI	CTGGAG	3 cut(s)	1062, 1514, 1929
HaeII	RGCGCY	2 cut(s)	10, 2783
HaeIII	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
HapII	CCGG	2 cut(s)	188, 858
HgaI	GACGC	2 cut(s)	1879, 2566
HhaI	GCGC	3 cut(s)	9, 349, 2782
Hin6I	GCGC	3 cut(s)	7, 347, 2780
HinP1I	GCGC	3 cut(s)	7, 347, 2780
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	2 cut(s)	737, 770
HinfI	GANTC	7 cut(s)	32, 136, 1583, 2626, 2659, 3010, 3209
HpaII	CCGG	2 cut(s)	188, 858
HphI	GGTGA	1 cut(s)	3204
HpyCH4IV	ACGT	4 cut(s)	206, 1285, 2240, 3079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	175, 239, 785, 1079, 2336, 2339
HpySE526I	ACGT	4 cut(s)	206, 1285, 2240, 3079
HspAI	GCGC	3 cut(s)	7, 347, 2780
KpnI	GGTACC	2 cut(s)	426, 1155
Ksp22I	TGATCA	1 cut(s)	2721
LmnI	GCTCC	4 cut(s)	809, 1243, 1574, 3108
Lsp1109I	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
LweI	GCATC	8 cut(s)	251, 336, 586, 775, 1243, 1369, 1890, 2626
MaeII	ACGT	4 cut(s)	206, 1285, 2240, 3079
MaeIII	GTNAC	9 cut(s)	53, 365, 404, 677, 1819, 1986, 2182, 2228, 2399
MfeI	CAATTG	2 cut(s)	1863, 2706
MflI	RGATCY	4 cut(s)	523, 2590, 2898, 3230
MhlI	GDGCHC	3 cut(s)	566, 1248, 3008
MlsI	TGGCCA	1 cut(s)	2246
MluNI	TGGCCA	1 cut(s)	2246
MmeI	TCCRAC	1 cut(s)	2872
Mox20I	TGGCCA	1 cut(s)	2246
Mph1103I	ATGCAT	1 cut(s)	1603
MroXI	GAANNNNTTC	3 cut(s)	8, 1587, 3026
MscI	TGGCCA	1 cut(s)	2246
MseI	TTAA	6 cut(s)	546, 647, 993, 1232, 2219, 2381
MslI	CAYNNNNRTG	1 cut(s)	2736
Msp20I	TGGCCA	1 cut(s)	2246
MspA1I	CMGCKG	2 cut(s)	779, 2342
MspI	CCGG	2 cut(s)	188, 858
MspR9I	CCNGG	5 cut(s)	256, 493, 925, 1115, 2916
MunI	CAATTG	2 cut(s)	1863, 2706
MvaI	CCWGG	5 cut(s)	256, 493, 925, 1115, 2916
MvnI	CGCG	1 cut(s)	2181
MwoI	GCNNNNNNNGC	6 cut(s)	175, 239, 785, 1079, 2336, 2339
NdeI	CATATG	1 cut(s)	1410
NheI	GCTAGC	2 cut(s)	1739, 1771
NlaIV	GGNNCC	7 cut(s)	213, 424, 922, 1153, 2102, 2506, 3006
NmuCI	GTSAC	4 cut(s)	53, 404, 2182, 2228
NsiI	ATGCAT	1 cut(s)	1603
NspI	RCATGY	2 cut(s)	1605, 2735
NspV	TTCGAA	2 cut(s)	586, 3192
PagI	TCATGA	2 cut(s)	132, 975
PceI	AGGCCT	2 cut(s)	254, 441
PdmI	GAANNNNTTC	3 cut(s)	8, 1587, 3026
PfeI	GAWTC	7 cut(s)	32, 136, 1583, 2626, 2659, 3010, 3209
PflFI	GACNNNGTC	1 cut(s)	1010
PflMI	CCANNNNNTGG	2 cut(s)	207, 832
PfoI	TCCNGGA	1 cut(s)	2914
PmaCI	CACGTG	1 cut(s)	207
PmlI	CACGTG	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	207
PpuMI	RGGWCCY	1 cut(s)	920
PshAI	GACNNNNGTC	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	2381
PsiI	TTATAA	1 cut(s)	2541
Psp124BI	GAGCTC	1 cut(s)	1248
Psp1406I	AACGTT	2 cut(s)	2240, 3079
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	5 cut(s)	254, 491, 923, 1113, 2914
PspCI	CACGTG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	1401
PspGI	CCWGG	5 cut(s)	254, 491, 923, 1113, 2914
PspN4I	GGNNCC	7 cut(s)	213, 424, 922, 1153, 2102, 2506, 3006
PspOMI	GGGCCC	1 cut(s)	3004
PspPI	GGNCC	8 cut(s)	212, 699, 920, 2100, 2337, 3004, 3005, 3089
PspPPI	RGGWCCY	1 cut(s)	920
PstI	CTGCAG	2 cut(s)	463, 2328
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	4 cut(s)	523, 2590, 2898, 3230
PsyI	GACNNNGTC	1 cut(s)	1010
PvuII	CAGCTG	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	2736
SacI	GAGCTC	1 cut(s)	1248
SaqAI	TTAA	6 cut(s)	546, 647, 993, 1232, 2219, 2381
Sau96I	GGNCC	8 cut(s)	212, 699, 920, 2100, 2337, 3004, 3005, 3089
ScaI	AGTACT	2 cut(s)	143, 3026
ScrFI	CCNGG	5 cut(s)	256, 493, 925, 1115, 2916
SduI	GDGCHC	3 cut(s)	566, 1248, 3008
SfaNI	GCATC	8 cut(s)	251, 336, 586, 775, 1243, 1369, 1890, 2626
SfcI	CTRYAG	6 cut(s)	459, 1464, 1841, 2233, 2324, 3065
SfuI	TTCGAA	2 cut(s)	586, 3192
SinI	GGWCC	3 cut(s)	212, 920, 2100
SmiMI	CAYNNNNRTG	1 cut(s)	2736
SmlI	CTYRAG	3 cut(s)	1368, 1442, 3298
SmoI	CTYRAG	3 cut(s)	1368, 1442, 3298
SseBI	AGGCCT	2 cut(s)	254, 441
SsiI	CCGC	9 cut(s)	127, 382, 607, 1775, 2050, 2340, 2413, 2645, 2944
SspI	AATATT	1 cut(s)	2154
SstI	GAGCTC	1 cut(s)	1248
StuI	AGGCCT	2 cut(s)	254, 441
StyD4I	CCNGG	5 cut(s)	254, 491, 923, 1113, 2914
StyI	CCWWGG	1 cut(s)	1482
TaiI	ACGT	4 cut(s)	209, 1288, 2243, 3082
TaqI	TCGA	6 cut(s)	68, 586, 783, 1005, 1711, 3192
TaqII	GACCGA	1 cut(s)	1077
TatI	WGTACW	5 cut(s)	78, 141, 1128, 1353, 3024
TauI	GCSGC	2 cut(s)	129, 2342
TfiI	GAWTC	7 cut(s)	32, 136, 1583, 2626, 2659, 3010, 3209
Tru1I	TTAA	6 cut(s)	546, 647, 993, 1232, 2219, 2381
Tru9I	TTAA	6 cut(s)	546, 647, 993, 1232, 2219, 2381
TscAI	CASTG	8 cut(s)	88, 727, 1270, 1677, 1930, 2121, 2563, 2911
TseFI	GTSAC	4 cut(s)	53, 404, 2182, 2228
TseI	GCWGC	9 cut(s)	379, 461, 1394, 1397, 1743, 2330, 2614, 2876, 2993
Tsp45I	GTSAC	4 cut(s)	53, 404, 2182, 2228
TspGWI	ACGGA	2 cut(s)	1175, 1681
TspRI	CASTG	8 cut(s)	88, 727, 1270, 1677, 1930, 2121, 2563, 2911
Tth111I	GACNNNGTC	1 cut(s)	1010
Van91I	CCANNNNNTGG	2 cut(s)	207, 832
VpaK11BI	GGWCC	3 cut(s)	212, 920, 2100
VspI	ATTAAT	1 cut(s)	2381
XapI	RAATTY	5 cut(s)	106, 756, 1451, 1891, 2869
XceI	RCATGY	2 cut(s)	1605, 2735
XmiI	GTMKAC	3 cut(s)	717, 2930, 3035
XmnI	GAANNNNTTC	3 cut(s)	8, 1587, 3026
ZrmI	AGTACT	2 cut(s)	143, 3026
Zsp2I	ATGCAT	1 cut(s)	1603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.