RchiOBHm_Chr2g0143551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003283
Physical Location & Seq
Reverse (-)
61237755 .. 61238635
881 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51364

Sequence Viewer

Length: 588 bp
ATGGGGATGCTGAGTAGCGGAGGGCTTTTGGGGCAGAGGCGCAGTCCTGGGAAGAATAATGGGTTTTTGGTCTCGGTTTGGGAGGACCGATCTCGATCTGTTCCTCTCGAATCGGGGACGAGGATGACGGTGGTTGTGGAGCAGAGATGTGACGGCTCTCTCCGGCGATGGGTTCTTGCGTCTCAGATCTGGGGATCTGAGCTGGGGCGGATGAGATCGAACCGAGATCAGGTCCTGACTCGGTTTTGGTTCTGGTTGCGGTCTTCAGCTGGGTCATGGATCAGTCTGCAACATGGCCAGACGGCGCGGCGGCGTAGTGATGCGGCGGCGCGACGTGGTGGTGTGTGGCAGCGGTGTGGTGACGTTGGAGCTGGCCGGAGTCGGAGATGGTTGTCCGATGTGTTTGCTCTTTGTCGGGGAAGTTGGTTTTTCGGATGGTCCTCTGGTCTTGGGCGGTTCTTTTGGTTTTCTTTCCCTCCTCTTTTGAGCGAGGGTTGGTTTTGTCGGTGCTTTCTGGTTGTCAATATGATGACGATTTACCCCTACACGTGGTCTGGCAGTTTTGGAGCACGGTGTCCGAACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.2

Weight (kDa)

11.49

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 307, 331
AciI CCGC 9 cut(s) 18, 208, 259, 307, 310, 323, 326, 352, 454
AclWI GGATC 2 cut(s) 202, 287
AcoI YGGCCR 2 cut(s) 295, 373
AcuI CTGAAG 1 cut(s) 249
AcvI CACGTG 1 cut(s) 549
AfiI CCNNNNNNNGG 3 cut(s) 169, 229, 549
AflIII ACRYGT 1 cut(s) 546
AjiI CACGTC 1 cut(s) 335
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 3 cut(s) 202, 269, 371
AluI AGCT 3 cut(s) 202, 269, 371
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 2 cut(s) 76, 186
AlwI GGATC 2 cut(s) 202, 287
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 2 cut(s) 295, 373
ApeKI GCWGC 1 cut(s) 349
AspLEI GCGC 3 cut(s) 42, 307, 331
AspS9I GGNCC 3 cut(s) 85, 232, 438
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 3 cut(s) 85, 232, 438
BalI TGGCCA 1 cut(s) 297
BbrPI CACGTG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 1 cut(s) 361
BccI CCATC 3 cut(s) 162, 381, 429
BceAI ACGGC 2 cut(s) 169, 318
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 76, 186
BglII AGATCT 1 cut(s) 186
BisI GCNGC 5 cut(s) 308, 311, 324, 327, 350
BlsI GCNGC 5 cut(s) 309, 312, 325, 328, 351
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 3 cut(s) 85, 232, 438
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 3 cut(s) 85, 232, 438
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 229, 549
Bse8I GATNNNNATC 1 cut(s) 94
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 4 cut(s) 12, 129, 216, 440
BseJI GATNNNNATC 1 cut(s) 94
BseLI CCNNNNNNNGG 3 cut(s) 169, 229, 549
BseMII CTCAG 2 cut(s) 189, 197
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 2 cut(s) 202, 269
Bsh1236I CGCG 2 cut(s) 307, 331
BshFI GGCC 2 cut(s) 297, 375
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 2 cut(s) 163, 376
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 3 cut(s) 169, 229, 549
BsmAI GTCTC 2 cut(s) 76, 186
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 2 cut(s) 297, 375
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
BspACI CCGC 9 cut(s) 18, 208, 259, 307, 310, 323, 326, 352, 454
BspANI GGCC 2 cut(s) 297, 375
BspCNI CTCAG 2 cut(s) 190, 196
BspFNI CGCG 2 cut(s) 307, 331
BspPI GGATC 2 cut(s) 202, 287
BspTNI GGTCTC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 130, 573
BstBAI YACGTR 1 cut(s) 549
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 11, 183, 198
BstF5I GGATG 4 cut(s) 12, 129, 216, 440
BstFNI CGCG 2 cut(s) 307, 331
BstHHI GCGC 3 cut(s) 42, 307, 331
BstKTI GATC 7 cut(s) 92, 98, 189, 197, 218, 229, 282
BstMAI GTCTC 2 cut(s) 76, 186
BstMBI GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstUI CGCG 2 cut(s) 307, 331
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 186, 194
BstYI RGATCY 2 cut(s) 186, 194
BsuRI GGCC 2 cut(s) 297, 375
BtgZI GCGATG 1 cut(s) 181
BtrI CACGTC 1 cut(s) 335
BtsCI GGATG 4 cut(s) 12, 129, 216, 440
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 3 cut(s) 42, 307, 331
Cfr13I GGNCC 3 cut(s) 85, 232, 438
CseI GACGC 1 cut(s) 168
CviAII CATG 2 cut(s) 276, 293
CviJI RGCY 7 cut(s) 25, 156, 202, 269, 297, 371, 375
CviKI_1 RGCY 7 cut(s) 25, 156, 202, 269, 297, 371, 375
DdeI CTNAG 3 cut(s) 11, 183, 198
DpnI GATC 7 cut(s) 91, 97, 188, 196, 217, 228, 281
DpnII GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
EaeI YGGCCR 2 cut(s) 295, 373
EciI GGCGGA 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 3 cut(s) 85, 232, 438
Eco57I CTGAAG 1 cut(s) 249
Eco72I CACGTG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 279, 296
FaiI YATR 3 cut(s) 277, 294, 527
FaqI GGGAC 1 cut(s) 130
FatI CATG 2 cut(s) 275, 292
Fnu4HI GCNGC 5 cut(s) 308, 311, 324, 327, 350
FokI GGATG 4 cut(s) 19, 136, 223, 447
Fsp4HI GCNGC 5 cut(s) 308, 311, 324, 327, 350
GlaI GCGC 3 cut(s) 41, 306, 330
GluI GCNGC 5 cut(s) 308, 311, 324, 327, 350
GsaI CCCAGC 2 cut(s) 206, 273
HaeIII GGCC 2 cut(s) 297, 375
HapII CCGG 2 cut(s) 163, 376
HgaI GACGC 1 cut(s) 168
HhaI GCGC 3 cut(s) 42, 307, 331
Hin1II CATG 2 cut(s) 279, 296
Hin6I GCGC 3 cut(s) 40, 305, 329
HinP1I GCGC 3 cut(s) 40, 305, 329
HinfI GANTC 3 cut(s) 110, 238, 379
HpaII CCGG 2 cut(s) 163, 376
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 6 cut(s) 186, 199, 384, 397, 434, 579
Hpy188III TCNNGA 3 cut(s) 93, 107, 235
Hpy99I CGWCG 1 cut(s) 336
HpyCH4III ACNGT 2 cut(s) 130, 573
HpyCH4IV ACGT 3 cut(s) 334, 363, 548
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 3 cut(s) 11, 183, 198
HpySE526I ACGT 3 cut(s) 334, 363, 548
Hsp92II CATG 2 cut(s) 279, 296
HspAI GCGC 3 cut(s) 40, 305, 329
Kzo9I GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
LmnI GCTCC 3 cut(s) 139, 368, 566
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 310
MaeII ACGT 3 cut(s) 334, 363, 548
MaeIII GTNAC 2 cut(s) 149, 359
MalI GATC 7 cut(s) 91, 97, 188, 196, 217, 228, 281
MboI GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
MboII GAAGA 2 cut(s) 64, 255
MflI RGATCY 2 cut(s) 186, 194
MhlI GDGCHC 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 297
MlyI GAGTC 2 cut(s) 232, 388
MmeI TCCRAC 2 cut(s) 346, 362
MnlI CCTC 9 cut(s) 14, 30, 76, 114, 114, 451, 484, 486, 489
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 297
MspA1I CMGCKG 2 cut(s) 269, 352
MspI CCGG 2 cut(s) 163, 376
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 2 cut(s) 307, 331
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
NlaIII CATG 2 cut(s) 279, 296
NmuCI GTSAC 2 cut(s) 149, 359
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 309, 312, 325, 328, 351
PleI GAGTC 2 cut(s) 232, 387
PmaCI CACGTG 1 cut(s) 549
PmlI CACGTG 1 cut(s) 549
PpsI GAGTC 2 cut(s) 232, 387
Ppu21I YACGTR 1 cut(s) 549
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 46
PspCI CACGTG 1 cut(s) 549
PspFI CCCAGC 2 cut(s) 202, 269
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 3 cut(s) 85, 232, 438
PspPPI RGGWCCY 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 2 cut(s) 186, 194
PvuII CAGCTG 1 cut(s) 269
SatI GCNGC 5 cut(s) 308, 311, 324, 327, 350
Sau3AI GATC 7 cut(s) 89, 95, 186, 194, 215, 226, 279
Sau96I GGNCC 3 cut(s) 85, 232, 438
SchI GAGTC 2 cut(s) 232, 388
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 571
SetI ASST 7 cut(s) 204, 234, 271, 337, 366, 373, 551
SfaNI GCATC 1 cut(s) 310
SinI GGWCC 3 cut(s) 85, 232, 438
SsiI CCGC 9 cut(s) 18, 208, 259, 307, 310, 323, 326, 352, 454
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 130, 573
TaiI ACGT 3 cut(s) 337, 366, 551
TaqI TCGA 3 cut(s) 94, 108, 218
TaqII GACCGA 1 cut(s) 102
TauI GCSGC 4 cut(s) 310, 313, 326, 329
TfiI GAWTC 1 cut(s) 110
TseFI GTSAC 2 cut(s) 149, 359
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 2 cut(s) 149, 359
VpaK11BI GGWCC 3 cut(s) 85, 232, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.