Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011904.1

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Reverse (-)

79491 .. 80132

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011904.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgggttcgacacagtccatgcaagtggtggaagagagcgaagaagacgaagaagaagaaggagaagaagaagaggtggaggaaggagaagagatcaacggcattggcgcgcccgtcagaagtgaattggacaaggatgatgatttggtcaagaaggttctggaacaagagcccgagatgctctgccacgcatccgcatcgccgctctcgcctcagctctcctcgctcgggacgccgcgactcggaccctccatcaaggtgtgggacccctacaacgtcctcgcgccccccacgccgcctcattcggtcttctcccggagcttctccttggaggacgagcgcttcgtgaccaccacggaggtgtttctggtttgtcacggcgagtgtgagttgaatttgaggcccgatttggtgggtggccggtgcccccaggctgcgttgactcccaatggcaagaggcaagcgagggccttggcggtcttcttgaattcccagagggtcaccttcaatgctgtttacacctctcctttggatcgtgcgcgctcaatggcggtttctgtctgtcaggtatataaaaaatatttattggcattttcaattcaatcttgcatcgaaaacctcgagcctctagtcctcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

213

Amino Acids

23.54

Weight (kDa)

4.5

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	4 cut(s)	110, 238, 284, 541
AciI	CCGC	6 cut(s)	195, 203, 236, 296, 476, 551
AclWI	GGATC	1 cut(s)	540
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	394, 487
AcyI	GRCGYC	1 cut(s)	233
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	228, 242
AgsI	TTSAA	5 cut(s)	394, 487, 508, 597, 602
AjnI	CCWGG	1 cut(s)	429
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	217, 321
AluI	AGCT	2 cut(s)	217, 321
AlwI	GGATC	1 cut(s)	540
Ama87I	CYCGRG	3 cut(s)	173, 227, 620
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	3 cut(s)	401, 418, 468
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	394, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AscI	GGCGCGCC	1 cut(s)	108
AspLEI	GCGC	6 cut(s)	110, 112, 286, 342, 541, 543
AspS9I	GGNCC	4 cut(s)	245, 265, 402, 468
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	493
AvaI	CYCGRG	3 cut(s)	173, 227, 620
AvaII	GGWCC	2 cut(s)	245, 265
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	3 cut(s)	51, 301, 472
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	115, 394
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	629
BfoI	RGCGCY	1 cut(s)	343
BisI	GCNGC	4 cut(s)	203, 236, 296, 435
BlsI	GCNGC	4 cut(s)	204, 237, 297, 436
Bme1390I	CCNGG	2 cut(s)	316, 431
Bme18I	GGWCC	2 cut(s)	245, 265
BmeT110I	CYCGRG	3 cut(s)	173, 227, 620
BmgT120I	GGNCC	4 cut(s)	245, 265, 402, 468
BmiI	GGNNCC	4 cut(s)	247, 266, 267, 425
BmrFI	CCNGG	2 cut(s)	316, 431
BmsI	GCATC	4 cut(s)	168, 200, 206, 618
BpiI	GAAGAC	3 cut(s)	51, 301, 472
Bpu10I	CCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	327, 354, 429, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 242
Bse118I	RCCGGY	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	4 cut(s)	327, 354, 429, 471
BseGI	GGATG	2 cut(s)	142, 191
BseLI	CCNNNNNNNGG	2 cut(s)	228, 242
BseMII	CTCAG	1 cut(s)	227
BsePI	GCGCGC	2 cut(s)	108, 539
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	4 cut(s)	110, 238, 284, 541
BshFI	GGCC	3 cut(s)	403, 420, 470
BshNI	GGYRCC	1 cut(s)	423
BsiHKCI	CYCGRG	3 cut(s)	173, 227, 620
BsiSI	CCGG	2 cut(s)	316, 421
BslFI	GGGAC	2 cut(s)	244, 278
BslI	CCNNNNNNNGG	2 cut(s)	228, 242
BsmFI	GGGAC	2 cut(s)	244, 278
BsnI	GGCC	3 cut(s)	403, 420, 470
BsoBI	CYCGRG	3 cut(s)	173, 227, 620
Bsp1286I	GDGCHC	2 cut(s)	174, 428
Bsp143I	GATC	2 cut(s)	93, 532
BspACI	CCGC	6 cut(s)	195, 203, 236, 296, 476, 551
BspANI	GGCC	3 cut(s)	403, 420, 470
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	4 cut(s)	110, 238, 284, 541
BspLI	GGNNCC	4 cut(s)	247, 266, 267, 425
BspPI	GGATC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	423
BsrBI	CCGCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	4 cut(s)	327, 354, 429, 471
BssHII	GCGCGC	2 cut(s)	108, 539
BssMI	GATC	2 cut(s)	93, 532
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	327, 471
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	3 cut(s)	27, 66, 84
BstACI	GRCGYC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	110, 462, 541
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	499
BstF5I	GGATG	2 cut(s)	142, 191
BstFNI	CGCG	4 cut(s)	110, 238, 284, 541
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	6 cut(s)	110, 112, 286, 342, 541, 543
BstKTI	GATC	2 cut(s)	96, 535
BstMBI	GATC	2 cut(s)	93, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 208, 223, 232, 292
BstNI	CCWGG	1 cut(s)	431
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	314, 429
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	4 cut(s)	110, 238, 284, 541
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	3 cut(s)	51, 301, 472
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	403, 420, 470
BtgI	CCRYGG	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	142, 191
Cac8I	GCNNGC	3 cut(s)	110, 462, 541
CfoI	GCGC	6 cut(s)	110, 112, 286, 342, 541, 543
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	4 cut(s)	245, 265, 402, 468
CseI	GACGC	1 cut(s)	241
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	8 cut(s)	172, 217, 321, 403, 420, 434, 470, 625
CviKI_1	RGCY	8 cut(s)	172, 217, 321, 403, 420, 434, 470, 625
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	95, 534
DpnII	GATC	2 cut(s)	93, 532
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	3 cut(s)	27, 66, 84
EarI	CTCTTC	3 cut(s)	27, 66, 84
Eco130I	CCWWGG	2 cut(s)	327, 471
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	245, 265
Eco47III	AGCGCT	1 cut(s)	341
Eco88I	CYCGRG	3 cut(s)	173, 227, 620
Eco91I	GGTNACC	1 cut(s)	499
EcoO109I	RGGNCCY	2 cut(s)	265, 468
EcoO65I	GGTNACC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	327, 471
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	327, 471
FaeI	CATG	1 cut(s)	22
FaiI	YATR	3 cut(s)	20, 571, 573
FaqI	GGGAC	2 cut(s)	244, 278
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	203, 236, 296, 435
FokI	GGATG	2 cut(s)	149, 178
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	203, 236, 296, 435
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	6 cut(s)	109, 111, 285, 341, 540, 542
GluI	GCNGC	4 cut(s)	203, 236, 296, 435
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	403, 420, 470
HapII	CCGG	2 cut(s)	316, 421
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	6 cut(s)	110, 112, 286, 342, 541, 543
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	6 cut(s)	108, 110, 284, 340, 539, 541
HinP1I	GCGC	6 cut(s)	108, 110, 284, 340, 539, 541
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	2 cut(s)	240, 442
HpaII	CCGG	2 cut(s)	316, 421
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	441, 517
Hpy188I	TCNGA	2 cut(s)	119, 245
Hpy188III	TCNNGA	5 cut(s)	151, 161, 229, 346, 484
Hpy8I	GTNNAC	2 cut(s)	441, 517
HpyAV	CCTTC	4 cut(s)	53, 77, 148, 514
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	22, 609
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 208, 223, 232, 292
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	6 cut(s)	108, 110, 284, 340, 539, 541
KflI	GGGWCCC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	93, 532
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	146, 329, 353, 416, 434, 443, 506, 551
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	4 cut(s)	168, 200, 206, 618
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	346, 374, 499
MalI	GATC	2 cut(s)	95, 534
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	93, 532
MhlI	GDGCHC	2 cut(s)	174, 428
MluCI	AATT	4 cut(s)	125, 394, 487, 597
MlyI	GAGTC	2 cut(s)	234, 436
MslI	CAYNNNNRTG	3 cut(s)	23, 257, 359
MspI	CCGG	2 cut(s)	316, 421
MspR9I	CCNGG	2 cut(s)	316, 431
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	4 cut(s)	110, 238, 284, 541
MwoI	GCNNNNNNNGC	5 cut(s)	178, 208, 223, 232, 292
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	93, 532
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	4 cut(s)	247, 266, 267, 425
NmuCI	GTSAC	3 cut(s)	346, 374, 499
OliI	CACNNNNGTG	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	620
PalAI	GGCGCGCC	1 cut(s)	108
PauI	GCGCGC	2 cut(s)	108, 539
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 618
PflFI	GACNNNGTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	204, 237, 297, 436
PleI	GAGTC	2 cut(s)	234, 436
PpsI	GAGTC	2 cut(s)	234, 436
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	429
PspEI	GGTNACC	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	4 cut(s)	247, 266, 267, 425
PspPI	GGNCC	4 cut(s)	245, 265, 402, 468
PspPPI	RGGWCCY	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	620
PsyI	GACNNNGTC	1 cut(s)	13
PteI	GCGCGC	2 cut(s)	108, 539
RseI	CAYNNNNRTG	3 cut(s)	23, 257, 359
SatI	GCNGC	4 cut(s)	203, 236, 296, 435
Sau3AI	GATC	2 cut(s)	93, 532
Sau96I	GGNCC	4 cut(s)	245, 265, 402, 468
SchI	GAGTC	2 cut(s)	234, 436
ScrFI	CCNGG	2 cut(s)	316, 431
SduI	GDGCHC	2 cut(s)	174, 428
SfaNI	GCATC	4 cut(s)	168, 200, 206, 618
Sfr274I	CTCGAG	1 cut(s)	620
SgsI	GGCGCGCC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	245, 265
SlaI	CTCGAG	1 cut(s)	620
SmiMI	CAYNNNNRTG	3 cut(s)	23, 257, 359
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	4 cut(s)	125, 394, 487, 597
SsiI	CCGC	6 cut(s)	195, 203, 236, 296, 476, 551
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	2 cut(s)	314, 429
StyI	CCWWGG	2 cut(s)	327, 471
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	8, 612, 621
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	125, 394, 487, 597
TauI	GCSGC	3 cut(s)	205, 238, 298
TseFI	GTSAC	3 cut(s)	346, 374, 499
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	3 cut(s)	346, 374, 499
TspGWI	ACGGA	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	245, 265
XapI	RAATTY	2 cut(s)	394, 487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XhoI	CTCGAG	1 cut(s)	620
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.