Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Reverse (-)

46763577 .. 46764472

Gene Structure 896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGAGGGGGAAGGACAGGCTGGCTGGGACCGGTTCGGATCGGAGGTCGGTCCGATTTGGTTCTGATATCCGGAGTGAGGCTGTGTGGGGCTGGGGCGGTGGAGTGGGTGGGTAGTCTTGGCCGGTGGTTCGACGACGGAGATGGCTCGCAGATGTTCGAGGTCCGACATCGGTGGCGGAGCAGCACGTATGGTGGCGTGTTGGTACTGGTGCCTTCCTGGACTGGGCTAACAAGTTTTGTGGCAGAGCATAATGGACTAATAACAGAGAATACACATGAAGAGGAGAAAGAGGTTAACGATGCGCGATACGACGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.71

Weight (kDa)

4.92

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AccII	CGCG	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	2 cut(s)	98, 178
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	121
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	78, 225
AgeI	ACCGGT	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	218
AlwI	GGATC	1 cut(s)	47
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	183
AsiGI	ACCGGT	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	29, 51, 163
AvaII	GGWCC	3 cut(s)	29, 51, 163
BanI	GGYRCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	220
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	3 cut(s)	29, 51, 163
BmgT120I	GGNCC	3 cut(s)	29, 51, 163
BmiI	GGNNCC	2 cut(s)	30, 213
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	31, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 225
Bse118I	RCCGGY	2 cut(s)	31, 123
Bse1I	ACTGG	2 cut(s)	213, 229
BseAI	TCCGGA	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	78, 225
BseNI	ACTGG	2 cut(s)	213, 229
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	195
BseYI	CCCAGC	2 cut(s)	25, 92
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	31
BsiSI	CCGG	3 cut(s)	32, 72, 124
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	78, 225
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	98, 178
BspANI	GGCC	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	30, 213
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	211
BsrFI	RCCGGY	2 cut(s)	31, 123
BsrI	ACTGG	2 cut(s)	213, 229
BssAI	RCCGGY	2 cut(s)	31, 123
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	23, 149
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	23, 149
CfoI	GCGC	1 cut(s)	307
Cfr10I	RCCGGY	2 cut(s)	31, 123
Cfr13I	GGNCC	3 cut(s)	29, 51, 163
CpoI	CGGWCCG	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	206
CspAI	ACCGGT	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CspI	CGGWCCG	1 cut(s)	51
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	7 cut(s)	21, 25, 82, 92, 123, 147, 229
CviKI_1	RGCY	7 cut(s)	21, 25, 82, 92, 123, 147, 229
CviQI	GTAC	1 cut(s)	206
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	69
Eco47I	GGWCC	3 cut(s)	29, 51, 163
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	69
FaeI	CATG	1 cut(s)	281
FaiI	YATR	3 cut(s)	192, 252, 279
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	184
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	184
GsaI	CCCAGC	2 cut(s)	29, 96
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	3 cut(s)	32, 72, 124
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	3 cut(s)	32, 72, 124
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	5 cut(s)	39, 44, 55, 66, 167
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	3 cut(s)	137, 140, 317
HpyAV	CCTTC	2 cut(s)	6, 225
HpyCH4IV	ACGT	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	305
Kpn2I	TCCGGA	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	188
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	38, 72, 154, 277, 286
MroI	TCCGGA	1 cut(s)	71
MseI	TTAA	2 cut(s)	297, 322
MspI	CCGG	3 cut(s)	32, 72, 124
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	307
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	30, 213
PfoI	TCCNGGA	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	2 cut(s)	25, 92
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	30, 213
PspPI	GGNCC	3 cut(s)	29, 51, 163
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
Rsr2I	CGGWCCG	1 cut(s)	51
RsrII	CGGWCCG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	297, 322
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	3 cut(s)	29, 51, 163
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	4 cut(s)	49, 165, 191, 297
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	3 cut(s)	29, 51, 163
SsiI	CCGC	2 cut(s)	98, 178
StyD4I	CCNGG	1 cut(s)	218
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	132, 159
TaqII	GACCGA	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	297, 322
Tru9I	TTAA	2 cut(s)	297, 322
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	3 cut(s)	29, 51, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.