Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Reverse (-)

69496910 .. 69499675

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG387700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTTGTGGCTCAATGGCTGGGGTTGGGAAGTTGCTTTTCTCGTCGTGCTCATGTGCAGGAGGCAGCTGAACGTGGATCGGGTTGGTGGCTACTAGGTGGGATCGATGTTGTTTGGCGGTATGGCGCTGCAGTGGGATTGACGGCGAAGCTACCATGGATAGGTGGGAGATCGGAGATGGGAGACGGAAGGACAGGCTGGCTGGGACCGGTTGGGATCGGAGGTCGGTCCGGTTTGGTTCTGATATCCGGAGTGAGGCTGTGTGGGGCTGGGGCGGTGGAGTGGGTGGGTAGTCTTGGCCGGTGGTTCGACGGCGGAGATGGCTTGCAGATGGTCGAGGTCCGACATCGGTGGCAGAGCGGCGCGTATGGTGGCGTGTTGGTTCAGGAACCGCTTTTGCGACCGAAGCTCGAACTAGCATGGCATTTACAAGATTCATCACCAACAGAGGAGGTCACAATTGCTTATATCGCGTTGGTTACAGGAATCAGGAATGTGATTGACAAGGGACTTCAGCTCCAAGTCACCGAATTGTCTCCCAGTCTATGGCTTCGATTATCTTCTTGGCTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.7

Weight (kDa)

7.84

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	546
AccBSI	CCGCTC	1 cut(s)	360
AccII	CGCG	2 cut(s)	365, 473
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	5 cut(s)	118, 275, 315, 360, 392
AclWI	GGATC	3 cut(s)	85, 110, 224
AcoI	YGGCCR	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	161, 255, 546
AgeI	ACCGGT	1 cut(s)	208
AluBI	AGCT	4 cut(s)	68, 151, 409, 517
AluI	AGCT	4 cut(s)	68, 151, 409, 517
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	177, 540
AlwI	GGATC	3 cut(s)	85, 110, 224
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	65, 128
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	128, 365
AspS9I	GGNCC	3 cut(s)	206, 228, 340
AsuHPI	GGTGA	2 cut(s)	432, 517
AvaII	GGWCC	3 cut(s)	206, 228, 340
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	77, 115
BccI	CCATC	3 cut(s)	172, 314, 325
BceAI	ACGGC	2 cut(s)	159, 328
BcoDI	GTCTC	2 cut(s)	177, 540
BfaI	CTAG	2 cut(s)	95, 416
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	3 cut(s)	66, 129, 361
BlsI	GCNGC	3 cut(s)	67, 130, 362
Bme18I	GGWCC	3 cut(s)	206, 228, 340
BmgT120I	GGNCC	3 cut(s)	206, 228, 340
BmiI	GGNNCC	2 cut(s)	207, 390
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	3 cut(s)	208, 230, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 255, 546
Bse118I	RCCGGY	2 cut(s)	208, 300
Bse1I	ACTGG	1 cut(s)	540
BseAI	TCCGGA	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	3 cut(s)	161, 255, 546
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	77, 115
BseYI	CCCAGC	3 cut(s)	19, 202, 269
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	2 cut(s)	365, 473
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	300
BshTI	ACCGGT	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	209, 231, 249, 301
BslFI	GGGAC	2 cut(s)	219, 522
BslI	CCNNNNNNNGG	3 cut(s)	161, 255, 546
BsmAI	GTCTC	2 cut(s)	177, 540
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	219, 522
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	77, 102, 170, 216
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	5 cut(s)	118, 275, 315, 360, 392
BspANI	GGCC	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	248
BspFNI	CGCG	2 cut(s)	365, 473
BspLI	GGNNCC	2 cut(s)	207, 390
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	3 cut(s)	85, 110, 224
BsrBI	CCGCTC	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	208, 300
BsrI	ACTGG	1 cut(s)	540
BssAI	RCCGGY	2 cut(s)	208, 300
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	4 cut(s)	77, 102, 170, 216
BssT1I	CCWWGG	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	200, 326
BstDSI	CCRYGG	1 cut(s)	155
BstFNI	CGCG	2 cut(s)	365, 473
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 365
BstKTI	GATC	4 cut(s)	80, 105, 173, 219
BstMAI	GTCTC	2 cut(s)	177, 540
BstMBI	GATC	4 cut(s)	77, 102, 170, 216
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 406, 470
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	365, 473
BstV1I	GCAGC	2 cut(s)	77, 115
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	200, 326
CfoI	GCGC	2 cut(s)	128, 365
Cfr10I	RCCGGY	2 cut(s)	208, 300
Cfr13I	GGNCC	3 cut(s)	206, 228, 340
ClaI	ATCGAT	1 cut(s)	105
CpoI	CGGWCCG	1 cut(s)	228
CspAI	ACCGGT	1 cut(s)	208
CspI	CGGWCCG	1 cut(s)	228
CviAII	CATG	3 cut(s)	53, 156, 420
DpnI	GATC	4 cut(s)	79, 104, 172, 218
DpnII	GATC	4 cut(s)	77, 102, 170, 216
EaeI	YGGCCR	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	246
Eco47I	GGWCC	3 cut(s)	206, 228, 340
Eco57I	CTGAAG	1 cut(s)	497
EcoRV	GATATC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	3 cut(s)	56, 159, 423
FaiI	YATR	7 cut(s)	54, 123, 157, 369, 421, 468, 547
FaqI	GGGAC	2 cut(s)	219, 522
FatI	CATG	3 cut(s)	52, 155, 419
Fnu4HI	GCNGC	3 cut(s)	66, 129, 361
Fsp4HI	GCNGC	3 cut(s)	66, 129, 361
FspBI	CTAG	2 cut(s)	95, 416
GlaI	GCGC	2 cut(s)	127, 364
GluI	GCNGC	3 cut(s)	66, 129, 361
GsaI	CCCAGC	3 cut(s)	23, 206, 273
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	4 cut(s)	209, 231, 249, 301
HhaI	GCGC	2 cut(s)	128, 365
Hin1II	CATG	3 cut(s)	56, 159, 423
Hin6I	GCGC	2 cut(s)	126, 363
HinP1I	GCGC	2 cut(s)	126, 363
HinfI	GANTC	2 cut(s)	434, 486
HpaII	CCGG	4 cut(s)	209, 231, 249, 301
HphI	GGTGA	2 cut(s)	432, 517
Hpy188I	TCNGA	4 cut(s)	175, 221, 243, 344
Hpy188III	TCNNGA	3 cut(s)	249, 386, 490
Hpy99I	CGWCG	2 cut(s)	48, 314
HpyAV	CCTTC	1 cut(s)	183
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	58, 131, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 406, 470
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	3 cut(s)	56, 159, 423
HspAI	GCGC	2 cut(s)	126, 363
Kpn2I	TCCGGA	1 cut(s)	248
Kzo9I	GATC	4 cut(s)	77, 102, 170, 216
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	2 cut(s)	77, 115
MaeI	CTAG	2 cut(s)	95, 416
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	3 cut(s)	454, 478, 523
MalI	GATC	4 cut(s)	79, 104, 172, 218
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	4 cut(s)	77, 102, 170, 216
MboII	GAAGA	1 cut(s)	552
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	459, 530
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	6 cut(s)	55, 215, 249, 331, 442, 445
MroI	TCCGGA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	4 cut(s)	209, 231, 249, 301
MunI	CAATTG	1 cut(s)	459
MvnI	CGCG	2 cut(s)	365, 473
MwoI	GCNNNNNNNGC	3 cut(s)	321, 406, 470
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	77, 102, 170, 216
NlaIII	CATG	3 cut(s)	56, 159, 423
NlaIV	GGNNCC	2 cut(s)	207, 390
NmuCI	GTSAC	2 cut(s)	454, 523
PfeI	GAWTC	2 cut(s)	434, 486
PflMI	CCANNNNNTGG	1 cut(s)	546
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	67, 130, 362
PspFI	CCCAGC	3 cut(s)	19, 202, 269
PspN4I	GGNNCC	2 cut(s)	207, 390
PspPI	GGNCC	3 cut(s)	206, 228, 340
PstI	CTGCAG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	68
Rsr2I	CGGWCCG	1 cut(s)	228
RsrII	CGGWCCG	1 cut(s)	228
SatI	GCNGC	3 cut(s)	66, 129, 361
Sau3AI	GATC	4 cut(s)	77, 102, 170, 216
Sau96I	GGNCC	3 cut(s)	206, 228, 340
SduI	GDGCHC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	3 cut(s)	206, 228, 340
Sse9I	AATT	2 cut(s)	459, 530
SsiI	CCGC	5 cut(s)	118, 275, 315, 360, 392
SspMI	CTAG	2 cut(s)	95, 416
StyI	CCWWGG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	105, 309, 336, 411, 553
TaqII	GACCGA	2 cut(s)	216, 418
TasI	AATT	2 cut(s)	459, 530
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	434, 486
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	2 cut(s)	454, 523
TseI	GCWGC	2 cut(s)	65, 128
Tsp45I	GTSAC	2 cut(s)	454, 523
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	546
VpaK11BI	GGWCC	3 cut(s)	206, 228, 340
XspI	CTAG	2 cut(s)	95, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.