Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Forward (+)

30010069 .. 30010464

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTGCAAGAGGTGGCCGAACGTGGATCGGGTTGGTGGGCTGCTAGGTGGGATCGATGTTGTTTGGATCTATGACGCTACGGTGGGACCGAAGGCGAAGCTACCACAGGTAGGTGGGAGATCGAGAGATAGGAGGCGGAAGGACGGTGGGCCGGGACACCGTTGGGATTGGAGGTCGGTCCGGTTTGGTTCGATATCCGGAGTGAGGCCGTGTGGGGATGGGGCGGTGGAGTGGGTGGGTAATCTTGGCCGGTGGTTCGTCTGCGGAGATGGCTCGCAAATGGTCGAGGTCCGACATCGGTGGCGGAGCGGCGCGTATGGTGGCGTGTTGGTACGGGTGCCTTCTGGGACCGGGCTAACGAGGTTGGGCTTGGGCGCCTTAGCTCTTTGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.28

Weight (kDa)

11.01

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	337, 374
AccBSI	CCGCTC	1 cut(s)	309
AccII	CGCG	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	5 cut(s)	136, 224, 264, 304, 309
AclWI	GGATC	3 cut(s)	33, 59, 74
AcoI	YGGCCR	2 cut(s)	14, 247
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	110, 204
AluBI	AGCT	2 cut(s)	100, 383
AluI	AGCT	2 cut(s)	100, 383
AlwI	GGATC	3 cut(s)	33, 59, 74
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	5 cut(s)	14, 149, 206, 247, 390
ApeKI	GCWGC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	314, 377
AspS9I	GGNCC	6 cut(s)	86, 149, 178, 289, 348, 390
AsuC2I	CCSGG	2 cut(s)	153, 352
AvaII	GGWCC	4 cut(s)	86, 178, 289, 348
BanI	GGYRCC	2 cut(s)	337, 374
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	212, 263
BceAI	ACGGC	1 cut(s)	193
BcnI	CCSGG	2 cut(s)	153, 352
BfaI	CTAG	2 cut(s)	44, 394
BfoI	RGCGCY	1 cut(s)	378
BisI	GCNGC	2 cut(s)	41, 310
BlsI	GCNGC	2 cut(s)	42, 311
Bme1390I	CCNGG	2 cut(s)	153, 352
Bme18I	GGWCC	4 cut(s)	86, 178, 289, 348
BmgT120I	GGNCC	6 cut(s)	86, 149, 178, 289, 348, 390
BmiI	GGNNCC	4 cut(s)	87, 339, 349, 376
BmrFI	CCNGG	2 cut(s)	153, 352
Bpu10I	CCTNAGC	1 cut(s)	379
BpuMI	CCSGG	2 cut(s)	153, 352
Bsa29I	ATCGAT	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	375
BsaWI	WCCGGW	2 cut(s)	180, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 204
Bse118I	RCCGGY	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	54
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	110, 204
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	5 cut(s)	16, 151, 208, 249, 392
BshNI	GGYRCC	2 cut(s)	337, 374
BshVI	ATCGAT	1 cut(s)	54
BsiSI	CCGG	5 cut(s)	152, 181, 198, 250, 351
BslFI	GGGAC	3 cut(s)	99, 168, 361
BslI	CCNNNNNNNGG	2 cut(s)	110, 204
BsmFI	GGGAC	3 cut(s)	99, 168, 361
BsnI	GGCC	5 cut(s)	16, 151, 208, 249, 392
Bsp13I	TCCGGA	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	25, 51, 66, 119
BspACI	CCGC	5 cut(s)	136, 224, 264, 304, 309
BspANI	GGCC	5 cut(s)	16, 151, 208, 249, 392
BspDI	ATCGAT	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	4 cut(s)	87, 339, 349, 376
BspPI	GGATC	3 cut(s)	33, 59, 74
BspT107I	GGYRCC	2 cut(s)	337, 374
BsrBI	CCGCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	249
BssMI	GATC	4 cut(s)	25, 51, 66, 119
BssNI	GRCGYC	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	82, 146, 161
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	2 cut(s)	314, 377
BstKTI	GATC	4 cut(s)	28, 54, 69, 122
BstMBI	GATC	4 cut(s)	25, 51, 66, 119
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 389
BstSCI	CCNGG	2 cut(s)	151, 350
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	16, 151, 208, 249, 392
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	2 cut(s)	314, 377
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	6 cut(s)	86, 149, 178, 289, 348, 390
ClaI	ATCGAT	1 cut(s)	54
CpoI	CGGWCCG	1 cut(s)	178
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	332
CspI	CGGWCCG	1 cut(s)	178
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	379
DinI	GGCGCC	1 cut(s)	376
DpnI	GATC	4 cut(s)	27, 53, 68, 121
DpnII	GATC	4 cut(s)	25, 51, 66, 119
EaeI	YGGCCR	2 cut(s)	14, 247
EciI	GGCGGA	2 cut(s)	151, 319
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	4 cut(s)	86, 178, 289, 348
EcoRV	GATATC	1 cut(s)	195
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
FaiI	YATR	2 cut(s)	72, 318
FaqI	GGGAC	3 cut(s)	99, 168, 361
Fnu4HI	GCNGC	2 cut(s)	41, 310
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	41, 310
FspBI	CTAG	2 cut(s)	44, 394
GlaI	GCGC	2 cut(s)	313, 376
GluI	GCNGC	2 cut(s)	41, 310
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	5 cut(s)	16, 151, 208, 249, 392
HapII	CCGG	5 cut(s)	152, 181, 198, 250, 351
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	314, 377
Hin1I	GRCGYC	1 cut(s)	375
Hin6I	GCGC	2 cut(s)	312, 375
HinP1I	GCGC	2 cut(s)	312, 375
HpaII	CCGG	5 cut(s)	152, 181, 198, 250, 351
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	2 cut(s)	123, 198
HpyAV	CCTTC	3 cut(s)	85, 133, 351
HpyCH4III	ACNGT	3 cut(s)	82, 146, 161
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 389
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	375
HspAI	GCGC	2 cut(s)	312, 375
KasI	GGCGCC	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	25, 51, 66, 119
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	7 cut(s)	92, 165, 194, 211, 263, 330, 364
Lsp1109I	GCAGC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	44, 394
MaeII	ACGT	1 cut(s)	21
MalI	GATC	4 cut(s)	27, 53, 68, 121
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	4 cut(s)	25, 51, 66, 119
MflI	RGATCY	1 cut(s)	66
Mly113I	GGCGCC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	6 cut(s)	3, 126, 165, 198, 280, 354
MroI	TCCGGA	1 cut(s)	197
MspI	CCGG	5 cut(s)	152, 181, 198, 250, 351
MspR9I	CCNGG	2 cut(s)	153, 352
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	270, 389
NarI	GGCGCC	1 cut(s)	375
NciI	CCSGG	2 cut(s)	153, 352
NdeII	GATC	4 cut(s)	25, 51, 66, 119
NlaIV	GGNNCC	4 cut(s)	87, 339, 349, 376
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	42, 311
PluTI	GGCGCC	1 cut(s)	378
PspN4I	GGNNCC	4 cut(s)	87, 339, 349, 376
PspPI	GGNCC	6 cut(s)	86, 149, 178, 289, 348, 390
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
Rsr2I	CGGWCCG	1 cut(s)	178
RsrII	CGGWCCG	1 cut(s)	178
SatI	GCNGC	2 cut(s)	41, 310
Sau3AI	GATC	4 cut(s)	25, 51, 66, 119
Sau96I	GGNCC	6 cut(s)	86, 149, 178, 289, 348, 390
ScrFI	CCNGG	2 cut(s)	153, 352
SfoI	GGCGCC	1 cut(s)	376
SinI	GGWCC	4 cut(s)	86, 178, 289, 348
SsiI	CCGC	5 cut(s)	136, 224, 264, 304, 309
SspDI	GGCGCC	1 cut(s)	374
SspMI	CTAG	2 cut(s)	44, 394
StyD4I	CCNGG	2 cut(s)	151, 350
TaaI	ACNGT	3 cut(s)	82, 146, 161
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	4 cut(s)	54, 122, 191, 285
TaqII	GACCGA	2 cut(s)	103, 166
TauI	GCSGC	1 cut(s)	312
TseI	GCWGC	1 cut(s)	40
VpaK11BI	GGWCC	4 cut(s)	86, 178, 289, 348
XspI	CTAG	2 cut(s)	44, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.