RLG00000016406

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003283
Physical Location & Seq
Forward (+)
6355924 .. 6357396
1473 bp
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UTR
Exon/CDS
Intron
RLM00000016406

Sequence Viewer

Length: 384 bp
ATGCCATTGTTATGGTGTCATGGTCATTCTGCTGTGTCATGGTCCGGTCTTTGGCCAGTGCTTTTTGGTTATCAACATGATGGTGAATCATCCTTACACATTGTTTGGCTGTTTTGGGACGTGGTGTCCGAACGGGTGAAAACAATTCATCTTAATGTTGGTGGTAGGGTTGTATCGTCCATGCAAGTGGTGGAAGAGAGCGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAGGAGGAGGAAGGAGAAGAGATCAACGGCATTGGCGCTCCCATTAGAAGTGAATTGGACAAGGATGATAATTTGGTCAAGAAGGTTCTGGAACAGGAGCTCGAGATGCTTTGCCACGCATCCGCATCGCCGCTCTCGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

128

Amino Acids

14.43

Weight (kDa)

4.29

Isoelectric Point (pI)

85.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 373
AciI CCGC 2 cut(s) 363, 371
AcoI YGGCCR 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 51
AhdI GACNNNNNGTC 1 cut(s) 124
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw21I GWGCWC 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 95, 148
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 42
BalI TGGCCA 1 cut(s) 55
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 342
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BfoI RGCGCY 1 cut(s) 279
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 42
BmeRI GACNNNNNGTC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 42
BmsI GCATC 3 cut(s) 336, 368, 374
BpiI GAAGAC 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 56
BseGI GGATG 3 cut(s) 89, 310, 359
BseLI CCNNNNNNNGG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 2 cut(s) 257, 260
BshFI GGCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 2 cut(s) 363, 371
BspANI GGCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 56
BssMI GATC 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 189, 252
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 3 cut(s) 89, 310, 359
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 346, 376
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 2 cut(s) 12, 187
BsuRI GGCC 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 3 cut(s) 89, 310, 359
BtsIMutI CAGTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 42
CviAII CATG 4 cut(s) 20, 39, 77, 181
CviJI RGCY 3 cut(s) 55, 109, 340
CviKI_1 RGCY 3 cut(s) 55, 109, 340
DdeI CTNAG 1 cut(s) 381
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DriI GACNNNNNGTC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 189, 252
Eam1105I GACNNNNNGTC 1 cut(s) 124
EarI CTCTTC 2 cut(s) 189, 252
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 4 cut(s) 23, 42, 80, 184
FaiI YATR 5 cut(s) 13, 21, 40, 78, 182
FaqI GGGAC 1 cut(s) 131
FatI CATG 4 cut(s) 19, 38, 76, 180
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 3 cut(s) 76, 317, 346
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 371
GlaI GCGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 1 cut(s) 55
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 278
Hin1II CATG 4 cut(s) 23, 42, 80, 184
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 95, 148
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 319, 329, 343
HpyAV CCTTC 2 cut(s) 245, 316
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 376
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 4 cut(s) 23, 42, 80, 184
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 261
LmnI GCTCC 2 cut(s) 283, 337
LpnPI CCDG 4 cut(s) 58, 69, 314, 320
LweI GCATC 3 cut(s) 336, 368, 374
MaeII ACGT 1 cut(s) 120
MalI GATC 1 cut(s) 263
MbiI CCGCTC 1 cut(s) 373
MboI GATC 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 3 cut(s) 144, 293, 310
MluNI TGGCCA 1 cut(s) 55
MnlI CCTC 3 cut(s) 235, 238, 241
Mox20I TGGCCA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 55
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 4 cut(s) 10, 81, 153, 185
Msp20I TGGCCA 1 cut(s) 55
MspI CCGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 346, 376
NdeII GATC 1 cut(s) 261
NlaIII CATG 4 cut(s) 23, 42, 80, 184
PaeR7I CTCGAG 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 42
RseI CAYNNNNRTG 4 cut(s) 10, 81, 153, 185
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 342
SetI ASST 3 cut(s) 123, 327, 342
SfaNI GCATC 3 cut(s) 336, 368, 374
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 42
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 4 cut(s) 10, 81, 153, 185
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 3 cut(s) 144, 293, 310
SsiI CCGC 2 cut(s) 363, 371
SstI GAGCTC 1 cut(s) 342
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 342
TasI AATT 3 cut(s) 144, 293, 310
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.