Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Reverse (-)

50976980 .. 50978134

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCATTGTTTTGGTGTCATAGTCGGTCTGCTGTGTCTGGGTCTGGTCTTTGGTCGGTGCTTTTTGGCTATCAACGTGATGGTGATTCACCCTTACACGTGGCCTGGCGGTTTTGGGTTGCGGTGTCCGAACGGGTGAAAACAGTTCATCTTAATGTTGGTGCCTGGGTTGTATCGGTACAGGTTTGGTTGGTACTTATTGTAGCTCGCGGGATTGAATACTCCCACAAACCGCCGCCGGAAATCTCCGTGAACCCACAATCCGATTTGGGGATCCCTACTTCGCAGGCAGACTTGCTTGTGCGTTTGGATGGAGGTCAGTGGCTGATTTGCTGGCTTGCTGCTGCATGCCTGCGTGAGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

6.89

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccII	CGCG	1 cut(s)	210
AciI	CCGC	5 cut(s)	109, 122, 210, 233, 236
AclWI	GGATC	2 cut(s)	268, 281
AcvI	CACGTG	1 cut(s)	100
AfaI	GTAC	2 cut(s)	180, 195
AfiI	CCNNNNNNNGG	1 cut(s)	270
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	104, 164
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
AlwI	GGATC	2 cut(s)	268, 281
AlwNI	CAGNNNCTG	1 cut(s)	325
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	341, 344
AsuHPI	GGTGA	3 cut(s)	81, 95, 148
BamHI	GGATCC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	328, 331
BccI	CCATC	2 cut(s)	74, 305
BciT130I	CCWGG	2 cut(s)	106, 166
BisI	GCNGC	3 cut(s)	236, 342, 345
BlsI	GCNGC	3 cut(s)	237, 343, 346
Bme1390I	CCNGG	2 cut(s)	106, 166
BmiI	GGNNCC	2 cut(s)	163, 275
BmrFI	CCNGG	2 cut(s)	106, 166
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	106, 166
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	328, 331
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	270
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	5 cut(s)	109, 122, 210, 233, 236
BspANI	GGCC	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	163, 275
BspPI	GGATC	2 cut(s)	268, 281
BspT107I	GGYRCC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	106, 166
Bst4CI	ACNGT	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	6 cut(s)	208, 288, 335, 339, 349, 353
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstNI	CCWGG	2 cut(s)	106, 166
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	104, 164
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	328, 331
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	6 cut(s)	208, 288, 335, 339, 349, 353
CaiI	CAGNNNCTG	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	179, 194
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	5 cut(s)	69, 104, 206, 325, 337
CviKI_1	RGCY	5 cut(s)	69, 104, 206, 325, 337
CviQI	GTAC	2 cut(s)	179, 194
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco72I	CACGTG	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	104, 164
FaeI	CATG	1 cut(s)	351
FaiI	YATR	2 cut(s)	21, 349
FatI	CATG	1 cut(s)	347
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	236, 342, 345
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	236, 342, 345
GluI	GCNGC	3 cut(s)	236, 342, 345
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	1 cut(s)	351
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	3 cut(s)	81, 95, 148
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	130, 265
Hpy8I	GTNNAC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	76, 99
HpyCH4V	TGCA	1 cut(s)	347
HpySE526I	ACGT	2 cut(s)	76, 99
Hsp92II	CATG	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	273
Lsp1109I	GCAGC	2 cut(s)	328, 331
MaeII	ACGT	2 cut(s)	76, 99
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MflI	RGATCY	1 cut(s)	273
MnlI	CCTC	1 cut(s)	308
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	106, 166
MvaI	CCWGG	2 cut(s)	106, 166
MvnI	CGCG	1 cut(s)	210
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	2 cut(s)	163, 275
NspI	RCATGY	1 cut(s)	351
PaeI	GCATGC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	237, 343, 346
PmaCI	CACGTG	1 cut(s)	100
PmlI	CACGTG	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	104, 164
PspCI	CACGTG	1 cut(s)	100
PspGI	CCWGG	2 cut(s)	104, 164
PspN4I	GGNNCC	2 cut(s)	163, 275
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	2 cut(s)	180, 195
RsaNI	GTAC	2 cut(s)	179, 194
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	236, 342, 345
Sau3AI	GATC	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	106, 166
SetI	ASST	5 cut(s)	79, 102, 186, 208, 319
SmiMI	CAYNNNNRTG	1 cut(s)	153
SphI	GCATGC	1 cut(s)	351
SsiI	CCGC	5 cut(s)	109, 122, 210, 233, 236
StyD4I	CCNGG	2 cut(s)	104, 164
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	79, 102
TaqII	GACCGA	1 cut(s)	15
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	2 cut(s)	341, 344
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.