Rh7AG143300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003283
Physical Location & Seq
Reverse (-)
11516782 .. 11518875
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG143300.1

Sequence Viewer

Length: 372 bp
ATGGGAGGCAGAAGGACAGGCTGGCTGGGACTGGTTGGGATCGGAGGTCGGTCCGGTTTGGTTCTGATATCCGGATTGAGGATGTGTGGGACTGGGGTGGTGGAGTGGGTGGGTAGTCTTGGCCGGTCGTTCGACGGCGGAGATGGCTCGCAGATGGTTGAGGTCCGACATCAGTGGCGGAGTGGCGAGTATGGTGGCGTGTTGGTTCAGCAGAGAGGCACCAGGATTGATGGTGTTGCATTGTTGGAACGGCCGGCCACCAGAGCTGCGGTCAAAGGGCTTGCCGCCGGAGGACATGGCGGTGACGGAGGCAAAGGAGCAAGATGCGGCTCCTATTCTGCTGCTTGGGTTTGGGCCTGGGCTCAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.67

Weight (kDa)

10.37

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 6 cut(s) 138, 178, 269, 285, 300, 327
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 3 cut(s) 121, 251, 255
AfiI CCNNNNNNNGG 1 cut(s) 78
AjnI CCWGG 2 cut(s) 221, 356
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 4 cut(s) 121, 251, 255, 354
ApeKI GCWGC 2 cut(s) 266, 341
AspS9I GGNCC 3 cut(s) 51, 163, 354
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 2 cut(s) 51, 163
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 253, 328
BccI CCATC 3 cut(s) 137, 148, 224
BceAI ACGGC 2 cut(s) 151, 266
BciT130I CCWGG 2 cut(s) 223, 358
BisI GCNGC 4 cut(s) 267, 285, 328, 342
BlsI GCNGC 4 cut(s) 268, 286, 329, 343
Bme1390I CCNGG 2 cut(s) 223, 358
Bme18I GGWCC 2 cut(s) 51, 163
BmgT120I GGNCC 3 cut(s) 51, 163, 354
BmiI GGNNCC 2 cut(s) 220, 331
BmrFI CCNGG 2 cut(s) 223, 358
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 2 cut(s) 53, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse118I RCCGGY 2 cut(s) 123, 253
Bse1I ACTGG 2 cut(s) 36, 97
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 2 cut(s) 223, 358
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 36, 97
BseX3I CGGCCG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 253, 328
BseYI CCCAGC 1 cut(s) 25
Bsh1285I CGRYCG 2 cut(s) 128, 254
BshFI GGCC 4 cut(s) 123, 253, 257, 356
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 2 cut(s) 128, 254
BsiSI CCGG 5 cut(s) 54, 72, 124, 254, 288
BslFI GGGAC 2 cut(s) 42, 103
BslI CCNNNNNNNGG 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 42, 103
BsnI GGCC 4 cut(s) 123, 253, 257, 356
Bsp1286I GDGCHC 1 cut(s) 364
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 6 cut(s) 138, 178, 269, 285, 300, 327
BspANI GGCC 4 cut(s) 123, 253, 257, 356
BspEI TCCGGA 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 220, 331
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 218
BsrFI RCCGGY 2 cut(s) 123, 253
BsrI ACTGG 2 cut(s) 36, 97
BssAI RCCGGY 2 cut(s) 123, 253
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 223, 358
BstC8I GCNNGC 4 cut(s) 23, 149, 255, 282
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 2 cut(s) 128, 254
BstMWI GCNNNNNNNGC 2 cut(s) 144, 263
BstNI CCWGG 2 cut(s) 223, 358
BstSCI CCNGG 2 cut(s) 221, 356
BstV1I GCAGC 2 cut(s) 253, 328
BstZI CGGCCG 1 cut(s) 251
BsuRI GGCC 4 cut(s) 123, 253, 257, 356
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 4 cut(s) 23, 149, 255, 282
Cfr10I RCCGGY 2 cut(s) 123, 253
Cfr13I GGNCC 3 cut(s) 51, 163, 354
CpoI CGGWCCG 1 cut(s) 51
CspI CGGWCCG 1 cut(s) 51
CviAII CATG 1 cut(s) 296
DdeI CTNAG 1 cut(s) 369
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 3 cut(s) 121, 251, 255
EagI CGGCCG 1 cut(s) 251
EciI GGCGGA 2 cut(s) 153, 193
EclXI CGGCCG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 364
Eco32I GATATC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 51, 163
Eco52I CGGCCG 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 221, 356
EcoRV GATATC 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 364
FaeI CATG 1 cut(s) 299
FaiI YATR 2 cut(s) 192, 297
FaqI GGGAC 2 cut(s) 42, 103
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 267, 285, 328, 342
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 364
FseI GGCCGGCC 1 cut(s) 257
Fsp4HI GCNGC 4 cut(s) 267, 285, 328, 342
GluI GCNGC 4 cut(s) 267, 285, 328, 342
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 4 cut(s) 123, 253, 257, 356
HapII CCGG 5 cut(s) 54, 72, 124, 254, 288
Hin1II CATG 1 cut(s) 299
HpaII CCGG 5 cut(s) 54, 72, 124, 254, 288
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 44, 66, 167
Hpy188III TCNNGA 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 263
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 1 cut(s) 299
Kpn2I TCCGGA 1 cut(s) 71
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 317, 335
Lsp1109I GCAGC 2 cut(s) 253, 328
LweI GCATC 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 364
MmeI TCCRAC 2 cut(s) 190, 225
MnlI CCTC 6 cut(s) 38, 72, 154, 209, 284, 302
MroI TCCGGA 1 cut(s) 71
MroNI GCCGGC 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 5 cut(s) 54, 72, 124, 254, 288
MspR9I CCNGG 2 cut(s) 223, 358
MvaI CCWGG 2 cut(s) 223, 358
MwoI GCNNNNNNNGC 2 cut(s) 144, 263
NaeI GCCGGC 1 cut(s) 255
NdeII GATC 1 cut(s) 39
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 2 cut(s) 220, 331
NmuCI GTSAC 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 255
PkrI GCNGC 4 cut(s) 268, 286, 329, 343
Psp6I CCWGG 2 cut(s) 221, 356
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 221, 356
PspN4I GGNNCC 2 cut(s) 220, 331
PspPI GGNCC 3 cut(s) 51, 163, 354
RigI GGCCGGCC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 300
Rsr2I CGGWCCG 1 cut(s) 51
RsrII CGGWCCG 1 cut(s) 51
SatI GCNGC 4 cut(s) 267, 285, 328, 342
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 3 cut(s) 51, 163, 354
ScrFI CCNGG 2 cut(s) 223, 358
SduI GDGCHC 1 cut(s) 364
SetI ASST 3 cut(s) 49, 165, 268
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 2 cut(s) 51, 163
SmiMI CAYNNNNRTG 1 cut(s) 300
SsiI CCGC 6 cut(s) 138, 178, 269, 285, 300, 327
StyD4I CCNGG 2 cut(s) 221, 356
TaqI TCGA 1 cut(s) 132
TaqII GACCGA 1 cut(s) 39
TauI GCSGC 2 cut(s) 287, 330
TscAI CASTG 1 cut(s) 179
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 266, 341
Tsp45I GTSAC 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 51, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.