Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000215.1

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Forward (+)

187949 .. 190588

Gene Structure 2640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000215.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggagtgggctttcaggatggtggtatggtccagagagggtggctggttctccgggttcgggtggcacagatcgaactcgatctgtctctctcagatctggggcggaggcaggggtgcagcagcgacggacttcggctttccagtgatggtttctggcttcatcgatcctgcgtgggtggtggctatggcgattcagatcggatcgaggatggggaaatctcgaatgggatctgcctatgctttggtctggaatcgctttgtggcagtttgcctgagtattgctgcggggcggcgacatgatggcgacggggctcactggcggcgggaatggttgcaaactgcgattgtcgttgtcttggtgaaaataagtccctcctcttgtaagcgagggtttgggggtggttgtttctatgtcgtgtcgataccattgttttggtatcatggtcgatctgctgtgtcttggtctggtcttttgtcggtactttatggttaccaatgtgatggtgaatcacccttacacgtgttctggctgttttggaatgcggtgtccgaacgggtgaaaacagttcatcatagtgttggtggctgggtggtatcggtacatgtttggttggtactcattgtagcttgtaggtatgggcgtagaatttggttaggggttgggcctctttggctcatggaggtcacttatggtgacggtccccctctgagaccgtaccgccacgaccctgcagctacaaccccctttgcctcgacccaagcaaaccgagctcacgctgttgtgaagtcagcgccatcccgatgtagcgcacgacagttcgccccacaatttaagtatcgctctaatcctggaagccaacggagcgcgccgaccactgtacaagaagaccaacgtgatctagaaaaacgtcacccagatcccgccgaggcaccctgcccaatacctcgagcaaaacatagtctctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.94

Weight (kDa)

9.91

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	931
AccII	CGCG	1 cut(s)	869
AciI	CCGC	8 cut(s)	105, 287, 292, 322, 325, 545, 721, 924
AclWI	GGATC	4 cut(s)	161, 211, 238, 914
AcsI	RAATTY	1 cut(s)	648
AcvI	CACGTG	1 cut(s)	523
AfaI	GTAC	5 cut(s)	483, 603, 618, 719, 882
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	3 cut(s)	520, 522, 604
AjnI	CCWGG	1 cut(s)	850
AluBI	AGCT	3 cut(s)	629, 737, 773
AluI	AGCT	3 cut(s)	629, 737, 773
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	3 cut(s)	92, 706, 968
AlwI	GGATC	4 cut(s)	161, 211, 238, 914
Ama87I	CYCGRG	1 cut(s)	948
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	4 cut(s)	119, 122, 284, 734
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	4 cut(s)	796, 812, 869, 871
AspS9I	GGNCC	3 cut(s)	30, 665, 701
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	6 cut(s)	373, 504, 518, 571, 707, 905
AvaI	CYCGRG	1 cut(s)	948
AvaII	GGWCC	2 cut(s)	30, 701
BaeI	ACNNNNGTAYC	2 cut(s)	416, 449
BanI	GGYRCC	1 cut(s)	931
BanII	GRGCYC	2 cut(s)	316, 775
BbrPI	CACGTG	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	4 cut(s)	131, 134, 271, 746
BccI	CCATC	6 cut(s)	13, 142, 205, 296, 497, 805
BciT130I	CCWGG	1 cut(s)	852
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	3 cut(s)	92, 706, 968
BfaI	CTAG	1 cut(s)	902
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	797
BglI	GCCNNNNNGGC	1 cut(s)	673
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	6 cut(s)	120, 123, 285, 293, 323, 735
BlsI	GCNGC	6 cut(s)	121, 124, 286, 294, 324, 736
Bme1390I	CCNGG	2 cut(s)	55, 852
Bme18I	GGWCC	2 cut(s)	30, 701
BmeT110I	CYCGRG	1 cut(s)	948
BmgT120I	GGNCC	3 cut(s)	30, 665, 701
BmiI	GGNNCC	2 cut(s)	703, 933
BmrFI	CCNGG	2 cut(s)	55, 852
BpiI	GAAGAC	1 cut(s)	894
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	1 cut(s)	927
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	143, 323
Bse8I	GATNNNNATC	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	927
BseGI	GGATG	3 cut(s)	24, 216, 797
BseJI	GATNNNNATC	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	107, 266, 701
BseNI	ACTGG	2 cut(s)	143, 323
BsePI	GCGCGC	1 cut(s)	867
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	4 cut(s)	131, 134, 271, 746
BseYI	CCCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	1 cut(s)	667
BshNI	GGYRCC	1 cut(s)	931
BshVI	ATCGAT	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	775
BsiHKCI	CYCGRG	1 cut(s)	948
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	357, 687
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	3 cut(s)	92, 706, 968
BsmFI	GGGAC	2 cut(s)	357, 687
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	667
Bso31I	GGTCTC	1 cut(s)	706
BsoBI	CYCGRG	1 cut(s)	948
Bsp1286I	GDGCHC	2 cut(s)	316, 775
Bsp1407I	TGTACA	1 cut(s)	880
BspACI	CCGC	8 cut(s)	105, 287, 292, 322, 325, 545, 721, 924
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	3 cut(s)	106, 267, 702
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	869
BspHI	TCATGA	1 cut(s)	968
BspLI	GGNNCC	2 cut(s)	703, 933
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	4 cut(s)	161, 211, 238, 914
BspT107I	GGYRCC	1 cut(s)	931
BspTNI	GGTCTC	1 cut(s)	706
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	143, 323
BssECI	CCNNGG	1 cut(s)	927
BssHII	GCGCGC	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	5 cut(s)	568, 701, 717, 819, 880
BstAUI	TGTACA	1 cut(s)	880
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	869
BstDEI	CTNAG	3 cut(s)	93, 275, 710
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	24, 216, 797
BstFNI	CGCG	1 cut(s)	869
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	4 cut(s)	796, 812, 869, 871
BstMAI	GTCTC	3 cut(s)	92, 706, 968
BstMWI	GCNNNNNNNGC	3 cut(s)	673, 770, 864
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	608
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	53, 850
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	4 cut(s)	131, 134, 271, 746
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	3 cut(s)	96, 230, 919
BstXI	CCANNNNNNTGG	2 cut(s)	435, 503
BstYI	RGATCY	3 cut(s)	96, 230, 919
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	667
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	24, 216, 797
BtsIMutI	CAGTG	3 cut(s)	150, 316, 876
Cac8I	GCNNGC	1 cut(s)	869
CciI	TCATGA	1 cut(s)	968
CfoI	GCGC	4 cut(s)	796, 812, 869, 871
Cfr13I	GGNCC	3 cut(s)	30, 665, 701
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	5 cut(s)	482, 602, 617, 718, 881
CviAII	CATG	5 cut(s)	299, 443, 605, 679, 969
CviQI	GTAC	5 cut(s)	482, 602, 617, 718, 881
DdeI	CTNAG	3 cut(s)	93, 275, 710
EciI	GGCGGA	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	773
Eco24I	GRGCYC	2 cut(s)	316, 775
Eco31I	GGTCTC	1 cut(s)	706
Eco47I	GGWCC	2 cut(s)	30, 701
Eco53kI	GAGCTC	1 cut(s)	773
Eco72I	CACGTG	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	948
Eco91I	GGTNACC	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	850
EcoT38I	GRGCYC	2 cut(s)	316, 775
FaeI	CATG	5 cut(s)	302, 446, 608, 682, 972
FaqI	GGGAC	2 cut(s)	357, 687
FatI	CATG	5 cut(s)	298, 442, 604, 678, 968
FauI	CCCGC	3 cut(s)	280, 318, 931
Fnu4HI	GCNGC	6 cut(s)	120, 123, 285, 293, 323, 735
FokI	GGATG	3 cut(s)	31, 223, 784
FriOI	GRGCYC	2 cut(s)	316, 775
Fsp4HI	GCNGC	6 cut(s)	120, 123, 285, 293, 323, 735
FspBI	CTAG	1 cut(s)	902
GlaI	GCGC	4 cut(s)	795, 811, 868, 870
GluI	GCNGC	6 cut(s)	120, 123, 285, 293, 323, 735
GsaI	CCCAGC	1 cut(s)	592
HaeII	RGCGCY	1 cut(s)	797
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	4 cut(s)	796, 812, 869, 871
Hin1II	CATG	5 cut(s)	302, 446, 608, 682, 972
Hin6I	GCGC	4 cut(s)	794, 810, 867, 869
HinP1I	GCGC	4 cut(s)	794, 810, 867, 869
HinfI	GANTC	3 cut(s)	193, 253, 509
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	6 cut(s)	373, 504, 518, 571, 707, 905
Hpy188I	TCNGA	5 cut(s)	96, 198, 203, 553, 711
Hpy188III	TCNNGA	7 cut(s)	16, 33, 222, 250, 801, 902, 969
Hpy99I	CGWCG	2 cut(s)	130, 311
HpyCH4III	ACNGT	5 cut(s)	568, 701, 717, 819, 880
HpyCH4IV	ACGT	3 cut(s)	522, 895, 910
HpyCH4V	TGCA	3 cut(s)	119, 337, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	673, 770, 864
HpyF3I	CTNAG	3 cut(s)	93, 275, 710
HpySE526I	ACGT	3 cut(s)	522, 895, 910
Hsp92II	CATG	5 cut(s)	302, 446, 608, 682, 972
HspAI	GCGC	4 cut(s)	794, 810, 867, 869
LmnI	GCTCC	1 cut(s)	864
Lsp1109I	GCAGC	4 cut(s)	131, 134, 271, 746
MaeI	CTAG	1 cut(s)	902
MaeII	ACGT	3 cut(s)	522, 895, 910
MaeIII	GTNAC	4 cut(s)	491, 685, 695, 911
MboII	GAAGA	1 cut(s)	899
MflI	RGATCY	3 cut(s)	96, 230, 919
MhlI	GDGCHC	2 cut(s)	316, 775
MluCI	AATT	2 cut(s)	648, 830
MseI	TTAA	1 cut(s)	834
MslI	CAYNNNNRTG	2 cut(s)	576, 802
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	55, 852
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	3 cut(s)	673, 770, 864
NciI	CCSGG	1 cut(s)	55
NlaIII	CATG	5 cut(s)	302, 446, 608, 682, 972
NlaIV	GGNNCC	2 cut(s)	703, 933
NmeAIII	GCCGAG	1 cut(s)	952
NmuCI	GTSAC	3 cut(s)	685, 695, 911
NspI	RCATGY	1 cut(s)	608
PaeR7I	CTCGAG	1 cut(s)	948
PagI	TCATGA	1 cut(s)	968
PauI	GCGCGC	1 cut(s)	867
PciI	ACATGT	1 cut(s)	604
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	3 cut(s)	193, 253, 509
PfoI	TCCNGGA	1 cut(s)	850
PkrI	GCNGC	6 cut(s)	121, 124, 286, 294, 324, 736
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	523
PscI	ACATGT	1 cut(s)	604
Psp124BI	GAGCTC	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	850
PspCI	CACGTG	1 cut(s)	523
PspEI	GGTNACC	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	2 cut(s)	703, 933
PspPI	GGNCC	3 cut(s)	30, 665, 701
PspXI	VCTCGAGB	1 cut(s)	948
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	3 cut(s)	96, 230, 919
PteI	GCGCGC	1 cut(s)	867
RsaI	GTAC	5 cut(s)	483, 603, 618, 719, 882
RsaNI	GTAC	5 cut(s)	482, 602, 617, 718, 881
RseI	CAYNNNNRTG	2 cut(s)	576, 802
SacI	GAGCTC	1 cut(s)	775
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	6 cut(s)	120, 123, 285, 293, 323, 735
Sau96I	GGNCC	3 cut(s)	30, 665, 701
ScrFI	CCNGG	2 cut(s)	55, 852
SduI	GDGCHC	2 cut(s)	316, 775
SetI	ASST	9 cut(s)	525, 631, 638, 687, 739, 775, 898, 913, 949
SfcI	CTRYAG	1 cut(s)	732
Sfr274I	CTCGAG	1 cut(s)	948
SinI	GGWCC	2 cut(s)	30, 701
SlaI	CTCGAG	1 cut(s)	948
SmiMI	CAYNNNNRTG	2 cut(s)	576, 802
SmlI	CTYRAG	1 cut(s)	948
SmoI	CTYRAG	1 cut(s)	948
Sse9I	AATT	2 cut(s)	648, 830
SsiI	CCGC	8 cut(s)	105, 287, 292, 322, 325, 545, 721, 924
SspMI	CTAG	1 cut(s)	902
SstI	GAGCTC	1 cut(s)	775
StyD4I	CCNGG	2 cut(s)	53, 850
TaaI	ACNGT	5 cut(s)	568, 701, 717, 819, 880
TaiI	ACGT	3 cut(s)	525, 898, 913
TaqI	TCGA	9 cut(s)	74, 80, 165, 206, 223, 422, 448, 755, 949
TasI	AATT	2 cut(s)	648, 830
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	2 cut(s)	295, 325
TfiI	GAWTC	3 cut(s)	193, 253, 509
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	3 cut(s)	150, 323, 883
TseFI	GTSAC	3 cut(s)	685, 695, 911
TseI	GCWGC	4 cut(s)	119, 122, 284, 734
Tsp45I	GTSAC	3 cut(s)	685, 695, 911
TspDTI	ATGAA	2 cut(s)	151, 560
TspGWI	ACGGA	2 cut(s)	143, 877
TspRI	CASTG	3 cut(s)	150, 323, 883
VpaK11BI	GGWCC	2 cut(s)	30, 701
XapI	RAATTY	1 cut(s)	648
XbaI	TCTAGA	1 cut(s)	901
XceI	RCATGY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	948
XspI	CTAG	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.