Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Forward (+)

24501341 .. 24506981

Gene Structure 5641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCTTGGTGCTCGGTGGCCGGGGTTGGGAAGCCGCTTTTCTCGTCGTGCTCATGTGCGGGAGGCGGCCGAATGTGGATCGAGTTGGTGGTCGCTAGGTGGGATCGATGTTGTTTGGATCTATGGCGCCGCAGCGGGGACCGACGGCGAAGCTACCAAGGATAGGTGGGAGATCGGAGATGGGAGGCGGAAGGACGGTGGGTCGGGACCGTTTGGTGAGAATATTGAGAAAAAAGAAGGAAAAAAAAAAGATAGAAAAGAACAATACGGTATTATGGAGTATTGGAGTTCCGCAAGCTTGGGCCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

8.79

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	7 cut(s)	34, 58, 65, 129, 134, 187, 291
AclWI	GGATC	3 cut(s)	85, 110, 125
AcoI	YGGCCR	2 cut(s)	17, 66
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	26, 135, 162
AhdI	GACNNNNNGTC	1 cut(s)	199
AluBI	AGCT	2 cut(s)	152, 297
AluI	AGCT	2 cut(s)	152, 297
Alw21I	GWGCWC	2 cut(s)	13, 52
AlwI	GGATC	3 cut(s)	85, 110, 125
AoxI	GGCC	3 cut(s)	17, 66, 301
ApeKI	GCWGC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	138, 206, 301
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	138, 206
BanI	GGYRCC	1 cut(s)	125
Bbv12I	GWGCWC	2 cut(s)	13, 52
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	21
BfaI	CTAG	2 cut(s)	95, 310
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	4 cut(s)	34, 66, 129, 132
BlsI	GCNGC	4 cut(s)	35, 67, 130, 133
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	2 cut(s)	138, 206
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	138, 206, 301
BmiI	GGNNCC	3 cut(s)	127, 139, 207
BmrFI	CCNGG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	21
Bsa29I	ATCGAT	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	20, 156
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 135, 162
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	20, 156
BseLI	CCNNNNNNNGG	3 cut(s)	26, 135, 162
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	19, 68, 303
BshNI	GGYRCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	13, 52
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	151, 219
BslI	CCNNNNNNNGG	3 cut(s)	26, 135, 162
BsmFI	GGGAC	2 cut(s)	151, 219
BsnI	GGCC	3 cut(s)	19, 68, 303
Bsp1286I	GDGCHC	2 cut(s)	13, 52
Bsp143I	GATC	4 cut(s)	77, 102, 117, 171
BspACI	CCGC	7 cut(s)	34, 58, 65, 129, 134, 187, 291
BspANI	GGCC	3 cut(s)	19, 68, 303
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	127, 139, 207
BspPI	GGATC	3 cut(s)	85, 110, 125
BspT107I	GGYRCC	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	20, 156
BssMI	GATC	4 cut(s)	77, 102, 117, 171
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	197, 210, 269
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	4 cut(s)	80, 105, 120, 174
BstMBI	GATC	4 cut(s)	77, 102, 117, 171
BstMCI	CGRYCG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BstZI	CGGCCG	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	19, 68, 303
BsuTUI	ATCGAT	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	138, 206, 301
ClaI	ATCGAT	1 cut(s)	105
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	6 cut(s)	19, 33, 68, 152, 297, 303
CviKI_1	RGCY	6 cut(s)	19, 33, 68, 152, 297, 303
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	4 cut(s)	79, 104, 119, 173
DpnII	GATC	4 cut(s)	77, 102, 117, 171
DriI	GACNNNNNGTC	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	17, 66
EagI	CGGCCG	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	138, 206
Eco52I	CGGCCG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	56
FaiI	YATR	3 cut(s)	54, 123, 275
FaqI	GGGAC	2 cut(s)	151, 219
FatI	CATG	1 cut(s)	52
FauI	CCCGC	2 cut(s)	51, 127
Fnu4HI	GCNGC	4 cut(s)	34, 66, 129, 132
Fsp4HI	GCNGC	4 cut(s)	34, 66, 129, 132
FspBI	CTAG	2 cut(s)	95, 310
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	34, 66, 129, 132
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	19, 68, 303
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	295
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	48, 146
HpyAV	CCTTC	2 cut(s)	184, 230
HpyCH4III	ACNGT	3 cut(s)	197, 210, 269
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	4 cut(s)	77, 102, 117, 171
LpnPI	CCDG	1 cut(s)	33
Lsp1109I	GCAGC	1 cut(s)	143
MaeI	CTAG	2 cut(s)	95, 310
MalI	GATC	4 cut(s)	79, 104, 119, 173
MboI	GATC	4 cut(s)	77, 102, 117, 171
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	13, 52
Mly113I	GGCGCC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	55, 177
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	77, 102, 117, 171
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	3 cut(s)	127, 139, 207
PkrI	GCNGC	4 cut(s)	35, 67, 130, 133
PluTI	GGCGCC	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	127, 139, 207
PspPI	GGNCC	3 cut(s)	138, 206, 301
PsuI	RGATCY	1 cut(s)	117
SatI	GCNGC	4 cut(s)	34, 66, 129, 132
Sau3AI	GATC	4 cut(s)	77, 102, 117, 171
Sau96I	GGNCC	3 cut(s)	138, 206, 301
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	2 cut(s)	13, 52
SetI	ASST	4 cut(s)	100, 154, 167, 299
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	2 cut(s)	138, 206
SsiI	CCGC	7 cut(s)	34, 58, 65, 129, 134, 187, 291
SspDI	GGCGCC	1 cut(s)	125
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	2 cut(s)	95, 310
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	197, 210, 269
TaqI	TCGA	2 cut(s)	80, 105
TaqII	GACCGA	1 cut(s)	155
TauI	GCSGC	3 cut(s)	36, 68, 131
TseI	GCWGC	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	138, 206
XspI	CTAG	2 cut(s)	95, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.