Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Forward (+)

8009297 .. 8021296

Gene Structure 12000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG091100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCTGGTGGCTCAGTGGCTGGGGTTGGGAAGCTGCTTTTCTCGTTGTGCTCATGTGCAGGAGGCGGCTGAACGTGGATCGGGTTGGTGGCTGCTAGGTGGGATCGATGTTGTTTGGCTCTATGGCGCTGCAGTGGGACTGACGGCGAAGCTACCATGGATAGGTGGGAGATCGGAGATGGGAGGCGGAAGGACAGGCTGGCTGGGACCGGTTGGGATCGGAGGTCGGTCCGGTTTGGTTCTGATATCCGGAGTGAGGATGTGTGGGGCTGGGGTGGTGGAGTGGGTGGGTAGTCTTGGCCGGTGGTTCGACGGCGGAGATGGCTCGCAGATGGTTGAGGTCCGACATCGGGGGCGGAGCGGCGAGTATGGTGGCGTGTTGGTTCAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.56

Weight (kDa)

8.63

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	5 cut(s)	65, 186, 315, 355, 360
AclWI	GGATC	3 cut(s)	85, 110, 224
AcoI	YGGCCR	1 cut(s)	298
AfiI	CCNNNNNNNGG	3 cut(s)	161, 255, 349
AgeI	ACCGGT	1 cut(s)	208
AluBI	AGCT	2 cut(s)	33, 151
AluI	AGCT	2 cut(s)	33, 151
Alw21I	GWGCWC	1 cut(s)	52
AlwI	GGATC	3 cut(s)	85, 110, 224
AlwNI	CAGNNNCTG	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	33, 91, 128
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	206, 228, 340
AvaII	GGWCC	3 cut(s)	206, 228, 340
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	20, 78, 115
BccI	CCATC	3 cut(s)	172, 314, 325
BceAI	ACGGC	2 cut(s)	159, 328
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	5 cut(s)	34, 66, 92, 129, 361
BlsI	GCNGC	5 cut(s)	35, 67, 93, 130, 362
Bme18I	GGWCC	3 cut(s)	206, 228, 340
BmgT120I	GGNCC	3 cut(s)	206, 228, 340
BmiI	GGNNCC	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	3 cut(s)	208, 230, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 255, 349
Bse118I	RCCGGY	2 cut(s)	208, 300
BseAI	TCCGGA	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	3 cut(s)	161, 255, 349
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	20, 78, 115
BseYI	CCCAGC	3 cut(s)	19, 202, 269
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	300
BshTI	ACCGGT	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	209, 231, 249, 301
BslFI	GGGAC	2 cut(s)	150, 219
BslI	CCNNNNNNNGG	3 cut(s)	161, 255, 349
BsmFI	GGGAC	2 cut(s)	150, 219
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	77, 102, 170, 216
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	5 cut(s)	65, 186, 315, 355, 360
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	25
BspDI	ATCGAT	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	3 cut(s)	85, 110, 224
BsrBI	CCGCTC	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	208, 300
BssAI	RCCGGY	2 cut(s)	208, 300
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	4 cut(s)	77, 102, 170, 216
BssT1I	CCWWGG	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	200, 326
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	4 cut(s)	80, 105, 173, 219
BstMBI	GATC	4 cut(s)	77, 102, 170, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	20, 78, 115
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	20, 138
Cac8I	GCNNGC	2 cut(s)	200, 326
CaiI	CAGNNNCTG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	2 cut(s)	208, 300
Cfr13I	GGNCC	3 cut(s)	206, 228, 340
ClaI	ATCGAT	1 cut(s)	105
CpoI	CGGWCCG	1 cut(s)	228
CspAI	ACCGGT	1 cut(s)	208
CspI	CGGWCCG	1 cut(s)	228
CviAII	CATG	2 cut(s)	53, 156
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	4 cut(s)	79, 104, 172, 218
DpnII	GATC	4 cut(s)	77, 102, 170, 216
EaeI	YGGCCR	1 cut(s)	298
EciI	GGCGGA	3 cut(s)	201, 330, 370
Eco130I	CCWWGG	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	246
Eco47I	GGWCC	3 cut(s)	206, 228, 340
EcoRV	GATATC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	56, 159
FaiI	YATR	4 cut(s)	54, 123, 157, 369
FaqI	GGGAC	2 cut(s)	150, 219
FatI	CATG	2 cut(s)	52, 155
Fnu4HI	GCNGC	5 cut(s)	34, 66, 92, 129, 361
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	5 cut(s)	34, 66, 92, 129, 361
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	5 cut(s)	34, 66, 92, 129, 361
GsaI	CCCAGC	3 cut(s)	23, 206, 273
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	4 cut(s)	209, 231, 249, 301
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	56, 159
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HpaII	CCGG	4 cut(s)	209, 231, 249, 301
Hpy188I	TCNGA	4 cut(s)	175, 221, 243, 344
Hpy188III	TCNNGA	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	183
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	58, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	56, 159
HspAI	GCGC	1 cut(s)	126
Kpn2I	TCCGGA	1 cut(s)	248
Kzo9I	GATC	4 cut(s)	77, 102, 170, 216
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	3 cut(s)	20, 78, 115
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	73
MalI	GATC	4 cut(s)	79, 104, 172, 218
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	4 cut(s)	77, 102, 170, 216
MhlI	GDGCHC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	5 cut(s)	55, 176, 215, 249, 331
MroI	TCCGGA	1 cut(s)	248
MspI	CCGG	4 cut(s)	209, 231, 249, 301
MwoI	GCNNNNNNNGC	1 cut(s)	321
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	77, 102, 170, 216
NlaIII	CATG	2 cut(s)	56, 159
NlaIV	GGNNCC	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	35, 67, 93, 130, 362
PspFI	CCCAGC	3 cut(s)	19, 202, 269
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	206, 228, 340
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	19
Rsr2I	CGGWCCG	1 cut(s)	228
RsrII	CGGWCCG	1 cut(s)	228
SatI	GCNGC	5 cut(s)	34, 66, 92, 129, 361
Sau3AI	GATC	4 cut(s)	77, 102, 170, 216
Sau96I	GGNCC	3 cut(s)	206, 228, 340
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	7 cut(s)	35, 76, 100, 153, 166, 226, 342
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	3 cut(s)	206, 228, 340
SsiI	CCGC	5 cut(s)	65, 186, 315, 355, 360
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	105, 309
TaqII	GACCGA	1 cut(s)	216
TauI	GCSGC	2 cut(s)	68, 363
TscAI	CASTG	2 cut(s)	20, 138
TseI	GCWGC	3 cut(s)	33, 91, 128
TspRI	CASTG	2 cut(s)	20, 138
VpaK11BI	GGWCC	3 cut(s)	206, 228, 340
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.