RchiOBHm_Chr5g0042021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003283
Physical Location & Seq
Reverse (-)
36907760 .. 36911444
3685 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32044

Sequence Viewer

Length: 831 bp
ATGGTCCCTCAATTCATGGAGCCACCTTTGGACATTATCAAATGTTGGGCGCTTAGTTATGAGGGCGCTGAACGTGGATCGGGTTGGTGGCTGCTAGGTGGGATCGATGTTGTTTGGCTCTATGGCGCTGCAGTGGGATTGACGGCGATGCTACCATGGATAGGTGGGAGATCGGAGATGGGAGGCGGAAGGATAGGCTGGCTGGGACCGGTTGGGATCGGAGGTCGATCCTGTTTGGTTCTGATATCCGGAGTGAGGATGTGTGGGGCTGGGGTGGTGGAGTGGGTGGCTAGTCTTGGCCGGTGGTTCGACGGCGGAGATGGCTCGCAGATGGTTGAGGTCCGACATCGGTGGCGGAGCGGCGAGTATGGTGGTGTGTTGGTTCAGGTGCCTTTCTGGACTGGGCTAAAGAGGTGGGGCTTGGCTGCCTTAGCTCTCTGGGCCTGGGCTTGTTATTTACTTATAGTTGGTGGTTTTTGGTTAGGTTTTTTCCGTTTTGGTTTTTGTTTAGGTATAATAAGTCCCTCCTCAATTAAGCGAGGGTTAGTTTGTTTTGGGTTCATAGGTGTGTCGTGGTCTGGACTTTTGTCGGTGCTTTTTGGTTATCAACGTGATGGTGAATCACCCTTATACGTGGTCTGGCAGTTTTGGATCGCGGTGTCCGAACGAGTGGAAACAGTTCATCGTAATGTTGGCGACTGGGTTGTATCGGTATATGTTAGGTGGTTACTCATTGTAGCTCGAGGGTATGAGCGTAAAATTTGGTTAGGGGTTGAGCCTTTTTGGCTCATGGAAGTCACTCATGTTGACGACCATGATGAACTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.84

Weight (kDa)

6.43

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccBSI CCGCTC 1 cut(s) 360
AccII CGCG 1 cut(s) 656
AccIII TCCGGA 1 cut(s) 248
AciI CCGC 5 cut(s) 186, 315, 355, 360, 656
AclWI GGATC 5 cut(s) 85, 110, 222, 224, 659
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 759
AfiI CCNNNNNNNGG 2 cut(s) 161, 255
AgeI ACCGGT 1 cut(s) 208
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 2 cut(s) 434, 740
AluI AGCT 2 cut(s) 434, 740
AlwI GGATC 5 cut(s) 85, 110, 222, 224, 659
Ama87I CYCGRG 1 cut(s) 741
Aor13HI TCCGGA 1 cut(s) 248
AoxI GGCC 2 cut(s) 298, 441
ApeKI GCWGC 3 cut(s) 91, 128, 425
ApoI RAATTY 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 3 cut(s) 52, 68, 128
AspS9I GGNCC 4 cut(s) 4, 206, 340, 441
AsuHPI GGTGA 2 cut(s) 615, 629
AvaI CYCGRG 1 cut(s) 741
AvaII GGWCC 3 cut(s) 4, 206, 340
BanI GGYRCC 1 cut(s) 388
BbvI GCAGC 3 cut(s) 78, 115, 412
BccI CCATC 4 cut(s) 172, 314, 325, 608
BceAI ACGGC 2 cut(s) 159, 328
BciT130I CCWGG 1 cut(s) 445
BfaI CTAG 2 cut(s) 95, 291
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 3 cut(s) 53, 69, 129
BglI GCCNNNNNGGC 1 cut(s) 784
BisI GCNGC 4 cut(s) 92, 129, 361, 426
BlsI GCNGC 4 cut(s) 93, 130, 362, 427
Bme1390I CCNGG 1 cut(s) 445
Bme18I GGWCC 3 cut(s) 4, 206, 340
BmeT110I CYCGRG 1 cut(s) 741
BmgT120I GGNCC 4 cut(s) 4, 206, 340, 441
BmiI GGNNCC 4 cut(s) 6, 21, 207, 390
BmrFI CCNGG 1 cut(s) 445
BmrI ACTGGG 2 cut(s) 411, 709
BmsI GCATC 1 cut(s) 138
BmuI ACTGGG 2 cut(s) 411, 709
BoxI GACNNNNGTC 1 cut(s) 586
Bpu10I CCTNAGC 1 cut(s) 430
Bsa29I ATCGAT 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 634
BsaJI CCNNGG 2 cut(s) 155, 444
BsaWI WCCGGW 2 cut(s) 208, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 255
Bse118I RCCGGY 2 cut(s) 208, 300
Bse1I ACTGG 2 cut(s) 406, 704
BseAI TCCGGA 1 cut(s) 248
BseBI CCWGG 1 cut(s) 445
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 155, 444
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 161, 255
BseNI ACTGG 2 cut(s) 406, 704
BseRI GAGGAG 1 cut(s) 517
BseXI GCAGC 3 cut(s) 78, 115, 412
BseYI CCCAGC 2 cut(s) 202, 269
Bsh1236I CGCG 1 cut(s) 656
BshFI GGCC 2 cut(s) 300, 443
BshNI GGYRCC 1 cut(s) 388
BshTI ACCGGT 1 cut(s) 208
BshVI ATCGAT 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 741
BsiSI CCGG 3 cut(s) 209, 249, 301
BslFI GGGAC 2 cut(s) 219, 507
BslI CCNNNNNNNGG 2 cut(s) 161, 255
BsmFI GGGAC 2 cut(s) 219, 507
BsnI GGCC 2 cut(s) 300, 443
BsoBI CYCGRG 1 cut(s) 741
Bsp13I TCCGGA 1 cut(s) 248
Bsp143I GATC 6 cut(s) 77, 102, 170, 216, 227, 651
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 5 cut(s) 186, 315, 355, 360, 656
BspANI GGCC 2 cut(s) 300, 443
BspDI ATCGAT 1 cut(s) 105
BspEI TCCGGA 1 cut(s) 248
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 4 cut(s) 6, 21, 207, 390
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 5 cut(s) 85, 110, 222, 224, 659
BspT107I GGYRCC 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 360
BsrFI RCCGGY 2 cut(s) 208, 300
BsrI ACTGG 2 cut(s) 406, 704
BssAI RCCGGY 2 cut(s) 208, 300
BssECI CCNNGG 2 cut(s) 155, 444
BssMI GATC 6 cut(s) 77, 102, 170, 216, 227, 651
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 679
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 2 cut(s) 200, 326
BstDEI CTNAG 2 cut(s) 53, 430
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 656
BstH2I RGCGCY 3 cut(s) 53, 69, 129
BstHHI GCGC 3 cut(s) 52, 68, 128
BstKTI GATC 6 cut(s) 80, 105, 173, 219, 230, 654
BstMBI GATC 6 cut(s) 77, 102, 170, 216, 227, 651
BstMWI GCNNNNNNNGC 4 cut(s) 321, 431, 440, 784
BstNI CCWGG 1 cut(s) 445
BstPAI GACNNNNGTC 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 3 cut(s) 78, 115, 412
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 2 cut(s) 300, 443
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 200, 326
CfoI GCGC 3 cut(s) 52, 68, 128
Cfr10I RCCGGY 2 cut(s) 208, 300
Cfr13I GGNCC 4 cut(s) 4, 206, 340, 441
ClaI ATCGAT 1 cut(s) 105
CspAI ACCGGT 1 cut(s) 208
CviAII CATG 5 cut(s) 16, 156, 790, 803, 815
DdeI CTNAG 2 cut(s) 53, 430
DpnI GATC 6 cut(s) 79, 104, 172, 218, 229, 653
DpnII GATC 6 cut(s) 77, 102, 170, 216, 227, 651
EaeI YGGCCR 1 cut(s) 298
EciI GGCGGA 3 cut(s) 201, 330, 370
Eco130I CCWWGG 1 cut(s) 155
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 4, 206, 340
Eco88I CYCGRG 1 cut(s) 741
EcoRII CCWGG 1 cut(s) 443
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 5 cut(s) 19, 159, 793, 806, 818
FaqI GGGAC 2 cut(s) 219, 507
FatI CATG 5 cut(s) 15, 155, 789, 802, 814
Fnu4HI GCNGC 4 cut(s) 92, 129, 361, 426
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 4 cut(s) 92, 129, 361, 426
FspBI CTAG 2 cut(s) 95, 291
GlaI GCGC 3 cut(s) 51, 67, 127
GluI GCNGC 4 cut(s) 92, 129, 361, 426
GsaI CCCAGC 2 cut(s) 206, 273
HaeII RGCGCY 3 cut(s) 53, 69, 129
HaeIII GGCC 2 cut(s) 300, 443
HapII CCGG 3 cut(s) 209, 249, 301
HhaI GCGC 3 cut(s) 52, 68, 128
Hin1II CATG 5 cut(s) 19, 159, 793, 806, 818
Hin6I GCGC 3 cut(s) 50, 66, 126
HinP1I GCGC 3 cut(s) 50, 66, 126
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HinfI GANTC 1 cut(s) 620
HpaII CCGG 3 cut(s) 209, 249, 301
HphI GGTGA 2 cut(s) 615, 629
Hpy166II GTNNAC 1 cut(s) 808
Hpy188I TCNGA 5 cut(s) 175, 221, 243, 344, 664
Hpy188III TCNNGA 3 cut(s) 249, 397, 579
Hpy8I GTNNAC 1 cut(s) 808
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 3 cut(s) 73, 610, 633
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 431, 440, 784
HpyF3I CTNAG 2 cut(s) 53, 430
HpySE526I ACGT 3 cut(s) 73, 610, 633
Hsp92II CATG 5 cut(s) 19, 159, 793, 806, 818
HspAI GCGC 3 cut(s) 50, 66, 126
Kpn2I TCCGGA 1 cut(s) 248
Kzo9I GATC 6 cut(s) 77, 102, 170, 216, 227, 651
LmnI GCTCC 2 cut(s) 19, 357
Lsp1109I GCAGC 3 cut(s) 78, 115, 412
LweI GCATC 1 cut(s) 138
MaeI CTAG 2 cut(s) 95, 291
MaeII ACGT 3 cut(s) 73, 610, 633
MaeIII GTNAC 2 cut(s) 726, 796
MalI GATC 6 cut(s) 79, 104, 172, 218, 229, 653
MbiI CCGCTC 1 cut(s) 360
MboI GATC 6 cut(s) 77, 102, 170, 216, 227, 651
MluCI AATT 4 cut(s) 11, 531, 759, 826
MmeI TCCRAC 1 cut(s) 367
MroI TCCGGA 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 2 cut(s) 534, 825
MslI CAYNNNNRTG 2 cut(s) 566, 687
MspI CCGG 3 cut(s) 209, 249, 301
MspR9I CCNGG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 4 cut(s) 321, 431, 440, 784
NcoI CCATGG 1 cut(s) 155
NdeII GATC 6 cut(s) 77, 102, 170, 216, 227, 651
NlaIII CATG 5 cut(s) 19, 159, 793, 806, 818
NlaIV GGNNCC 4 cut(s) 6, 21, 207, 390
NmuCI GTSAC 1 cut(s) 796
PaeR7I CTCGAG 1 cut(s) 741
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 1 cut(s) 620
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 4 cut(s) 93, 130, 362, 427
Ppu21I YACGTR 1 cut(s) 634
PshAI GACNNNNGTC 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 443
PspFI CCCAGC 2 cut(s) 202, 269
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 4 cut(s) 6, 21, 207, 390
PspPI GGNCC 4 cut(s) 4, 206, 340, 441
PspXI VCTCGAGB 1 cut(s) 741
PstI CTGCAG 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 566, 687
SaqAI TTAA 2 cut(s) 534, 825
SatI GCNGC 4 cut(s) 92, 129, 361, 426
Sau3AI GATC 6 cut(s) 77, 102, 170, 216, 227, 651
Sau96I GGNCC 4 cut(s) 4, 206, 340, 441
ScrFI CCNGG 1 cut(s) 445
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 741
SinI GGWCC 3 cut(s) 4, 206, 340
SlaI CTCGAG 1 cut(s) 741
SmiMI CAYNNNNRTG 2 cut(s) 566, 687
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 4 cut(s) 11, 531, 759, 826
SsiI CCGC 5 cut(s) 186, 315, 355, 360, 656
SspMI CTAG 2 cut(s) 95, 291
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 3 cut(s) 76, 613, 636
TaqI TCGA 4 cut(s) 105, 226, 309, 742
TasI AATT 4 cut(s) 11, 531, 759, 826
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 2 cut(s) 534, 825
Tru9I TTAA 2 cut(s) 534, 825
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 3 cut(s) 91, 128, 425
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 3 cut(s) 4, 550, 671
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 3 cut(s) 4, 206, 340
XapI RAATTY 1 cut(s) 759
XhoI CTCGAG 1 cut(s) 741
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 2 cut(s) 95, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.