Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Reverse (-)

2480483 .. 2480955

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000606

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGGCCGACTGCCTTGGATCTCTGGGCCCGGGCTTTGTTGCTTGGGCTGGATGGTTTTTGGGCCTGGGTATGGTTTTGGGCTCAGGGTCGATGCCATTGTTATGGTGTCATGGTTGTTTTGCTGTGTCATGGTCTGGTCTTTTGTCAATGCTTTTTGGTTATCAACGTGATGGTGAATCACCTTTACACGTGGTCTGGCGGTTTTGGGTCGCGGTGTCCGAACGGTTGAAAACTGTTCATCGTAATGTTGGTGGCTGGGTTGTATCGATACAGGTTTGGTTGTTACTCATTATAGCTCGCGTGTATGAGCGTAAAATTTGGTTAGGGGTTGGACCTTTTTGGCTCATGGAAGTCACTTTGTTGATGGTCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.04

Weight (kDa)

7.78

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	215, 303
AciI	CCGC	2 cut(s)	202, 215
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	318
AcvI	CACGTG	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	6, 28, 64
ApaI	GGGCCC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	318
AspS9I	GGNCC	5 cut(s)	28, 29, 64, 335, 370
AsuC2I	CCSGG	2 cut(s)	32, 33
AsuHPI	GGTGA	2 cut(s)	174, 188
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	335, 370
BaeGI	GKGCMC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	32, 86
BbrPI	CACGTG	1 cut(s)	193
BccI	CCATC	3 cut(s)	48, 167, 361
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	2 cut(s)	32, 33
Bme1390I	CCNGG	3 cut(s)	32, 33, 68
Bme18I	GGWCC	2 cut(s)	335, 370
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	5 cut(s)	28, 29, 64, 335, 370
BmiI	GGNNCC	2 cut(s)	30, 372
BmrFI	CCNGG	3 cut(s)	32, 33, 68
BmsI	GCATC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	85
BpuMI	CCSGG	2 cut(s)	32, 33
Bsa29I	ATCGAT	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	16, 31, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	16, 31, 67
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	2 cut(s)	215, 303
BshFI	GGCC	3 cut(s)	8, 30, 66
BshVI	ATCGAT	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	8, 30, 66
BsoBI	CYCGRG	1 cut(s)	31
Bsp120I	GGGCCC	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	32, 86
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	2 cut(s)	202, 215
BspANI	GGCC	3 cut(s)	8, 30, 66
BspCNI	CTCAG	1 cut(s)	98
BspDI	ATCGAT	1 cut(s)	269
BspFNI	CGCG	2 cut(s)	215, 303
BspLI	GGNNCC	2 cut(s)	30, 372
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	16, 31, 67
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	228, 238
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	2 cut(s)	215, 303
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	30, 31, 66
BstSLI	GKGCMC	1 cut(s)	32
BstUI	CGCG	2 cut(s)	215, 303
BstX2I	RGATCY	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	8, 30, 66
BsuTUI	ATCGAT	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	301
Cfr13I	GGNCC	5 cut(s)	28, 29, 64, 335, 370
Cfr9I	CCCGGG	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	269
CviAII	CATG	3 cut(s)	113, 132, 349
CviJI	RGCY	9 cut(s)	8, 30, 36, 50, 66, 84, 258, 299, 346
CviKI_1	RGCY	9 cut(s)	8, 30, 36, 50, 66, 84, 258, 299, 346
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	32, 86
Eco47I	GGWCC	2 cut(s)	335, 370
Eco72I	CACGTG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	2 cut(s)	32, 86
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	116, 135, 352
FaiI	YATR	7 cut(s)	74, 106, 114, 133, 296, 309, 350
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	3 cut(s)	112, 131, 348
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	2 cut(s)	32, 86
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	8, 30, 66
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	3 cut(s)	116, 135, 352
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	174, 188
Hpy188I	TCNGA	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	228, 238
HpyCH4IV	ACGT	2 cut(s)	169, 192
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	2 cut(s)	169, 192
Hsp92II	CATG	3 cut(s)	116, 135, 352
Kzo9I	GATC	1 cut(s)	20
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	2 cut(s)	169, 192
MaeIII	GTNAC	2 cut(s)	285, 355
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	32, 86
MluCI	AATT	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	313
MslI	CAYNNNNRTG	2 cut(s)	103, 246
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	32, 33, 68
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	2 cut(s)	215, 303
NciI	CCSGG	2 cut(s)	32, 33
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	116, 135, 352
NlaIV	GGNNCC	2 cut(s)	30, 372
NmuCI	GTSAC	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	179
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	66
PspCI	CACGTG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	30, 372
PspOMI	GGGCCC	1 cut(s)	28
PspPI	GGNCC	5 cut(s)	28, 29, 64, 335, 370
PsuI	RGATCY	1 cut(s)	20
RseI	CAYNNNNRTG	2 cut(s)	103, 246
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	5 cut(s)	28, 29, 64, 335, 370
ScrFI	CCNGG	3 cut(s)	32, 33, 68
SduI	GDGCHC	2 cut(s)	32, 86
SetI	ASST	6 cut(s)	172, 187, 195, 279, 301, 340
SfaNI	GCATC	1 cut(s)	84
SinI	GGWCC	2 cut(s)	335, 370
SmaI	CCCGGG	1 cut(s)	33
SmiMI	CAYNNNNRTG	2 cut(s)	103, 246
SrfI	GCCCGGGC	1 cut(s)	33
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	202, 215
StyD4I	CCNGG	3 cut(s)	30, 31, 66
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	228, 238
TaiI	ACGT	2 cut(s)	172, 195
TaqI	TCGA	2 cut(s)	92, 269
TasI	AATT	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	230
TspMI	CCCGGG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	335, 370
XapI	RAATTY	1 cut(s)	318
XmaI	CCCGGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.