RLG00000011277

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003283
Physical Location & Seq
Reverse (-)
8182499 .. 8183833
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011277

Sequence Viewer

Length: 474 bp
ATGCAAGAGGCGGTTGAACGTGGATCAGGTTGGTGGCTGCTAGGTGGGATCGATGTTGTTTGGATCTATGACGTTGCAGTGGGACTGCCGGTGAAGCTACCATGGGTAGGTGGGAGATCAGAGATGGGAGGTAGAAGGACAGGCTGGCTGGGATCGATTGGGATCGGAGGTCGGTCCGGTTTGGTTCTGATATCCGGAGTGAGGCTGTGGGGCTGGGGCGGTGGAGTGGGTGCCTTCTTGGACTGGGCTAACGAGTTGGGGCTTGGCTACCTTAGCTCTCTGGGCCTGGGCTTGTTATTTACTTATAGTTGGTGGTTTTTGATCGAGGTGTCCGAACGAGTGAAAACAGTTCATCGTAATGTTGGTGGCTGGGTTGTATCGGGGGAAATAATTGTGACCGACGTGTCAATTCCCAACGCGTCACGTAATCCTACATGGACCCGACAAGTGTGCGCATCAGCCTGGCAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.06

Weight (kDa)

7.93

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 403
Acc16I TGCGCA 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 230
AccII CGCG 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 2 cut(s) 11, 219
AclWI GGATC 5 cut(s) 31, 56, 71, 160, 170
AfiI CCNNNNNNNGG 2 cut(s) 107, 201
AflIII ACRYGT 2 cut(s) 402, 417
AgsI TTSAA 1 cut(s) 17
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 2 cut(s) 285, 461
AluBI AGCT 2 cut(s) 97, 276
AluI AGCT 2 cut(s) 97, 276
AlwI GGATC 5 cut(s) 31, 56, 71, 160, 170
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 174, 283, 438
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 2 cut(s) 174, 438
BanI GGYRCC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BciT130I CCWGG 2 cut(s) 287, 463
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 287, 463
Bme18I GGWCC 2 cut(s) 174, 438
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 3 cut(s) 174, 283, 438
BmiI GGNNCC 2 cut(s) 232, 440
BmrFI CCNGG 2 cut(s) 287, 463
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 272
Bsa29I ATCGAT 2 cut(s) 51, 155
BsaAI YACGTR 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 101, 286
BsaWI WCCGGW 2 cut(s) 176, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 201
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 2 cut(s) 287, 463
BseCI ATCGAT 2 cut(s) 51, 155
BseDI CCNNGG 2 cut(s) 101, 286
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 107, 201
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 3 cut(s) 148, 213, 369
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 230
BshVI ATCGAT 2 cut(s) 51, 155
BsiSI CCGG 3 cut(s) 89, 177, 195
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 107, 201
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 285
Bsp13I TCCGGA 1 cut(s) 194
Bsp143I GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 2 cut(s) 11, 219
BspANI GGCC 1 cut(s) 285
BspDI ATCGAT 2 cut(s) 51, 155
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 2 cut(s) 232, 440
BspPI GGATC 5 cut(s) 31, 56, 71, 160, 170
BspT107I GGYRCC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 101, 286
BssMI GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 287, 463
Bst4CI ACNGT 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 7 cut(s) 26, 51, 66, 119, 155, 165, 324
BstMBI GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
BstMWI GCNNNNNNNGC 3 cut(s) 94, 273, 282
BstNI CCWGG 2 cut(s) 287, 463
BstSCI CCNGG 2 cut(s) 285, 461
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
Bsu15I ATCGAT 2 cut(s) 51, 155
BsuRI GGCC 1 cut(s) 285
BsuTUI ATCGAT 2 cut(s) 51, 155
BtgI CCRYGG 1 cut(s) 101
BtrI CACGTC 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 1 cut(s) 455
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 3 cut(s) 174, 283, 438
ClaI ATCGAT 2 cut(s) 51, 155
CpoI CGGWCCG 1 cut(s) 174
CseI GACGC 1 cut(s) 408
CspI CGGWCCG 1 cut(s) 174
CviAII CATG 2 cut(s) 102, 435
DdeI CTNAG 1 cut(s) 272
DpnI GATC 7 cut(s) 25, 50, 65, 118, 154, 164, 323
DpnII GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
DrdI GACNNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 101
Eco32I GATATC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 174, 438
EcoRII CCWGG 2 cut(s) 285, 461
EcoRV GATATC 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 2 cut(s) 105, 438
FaiI YATR 4 cut(s) 69, 103, 306, 436
FaqI GGGAC 1 cut(s) 96
FatI CATG 2 cut(s) 101, 434
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
FspAI RTGCGCAY 1 cut(s) 454
FspBI CTAG 1 cut(s) 41
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 1 cut(s) 454
GluI GCNGC 1 cut(s) 38
GsaI CCCAGC 3 cut(s) 152, 217, 373
HaeIII GGCC 1 cut(s) 285
HapII CCGG 3 cut(s) 89, 177, 195
HgaI GACGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 455
Hin1II CATG 2 cut(s) 105, 438
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HpaII CCGG 3 cut(s) 89, 177, 195
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 4 cut(s) 121, 167, 189, 334
Hpy188III TCNNGA 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 2 cut(s) 129, 244
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 4 cut(s) 19, 72, 402, 424
HpyCH4V TGCA 2 cut(s) 4, 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 273, 282
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 4 cut(s) 19, 72, 402, 424
Hsp92II CATG 2 cut(s) 105, 438
HspAI GCGC 1 cut(s) 453
Kpn2I TCCGGA 1 cut(s) 194
Kzo9I GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 464
MaeI CTAG 1 cut(s) 41
MaeII ACGT 4 cut(s) 19, 72, 402, 424
MaeIII GTNAC 2 cut(s) 394, 420
MalI GATC 7 cut(s) 25, 50, 65, 118, 154, 164, 323
MboI GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
MflI RGATCY 1 cut(s) 63
MluCI AATT 2 cut(s) 390, 408
MluI ACGCGT 1 cut(s) 417
MnlI CCTC 4 cut(s) 122, 161, 195, 319
MroI TCCGGA 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 357
MspI CCGG 3 cut(s) 89, 177, 195
MspR9I CCNGG 2 cut(s) 287, 463
MvaI CCWGG 2 cut(s) 287, 463
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 94, 273, 282
NcoI CCATGG 1 cut(s) 101
NdeII GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
NlaIII CATG 2 cut(s) 105, 438
NlaIV GGNNCC 2 cut(s) 232, 440
NmuCI GTSAC 2 cut(s) 394, 420
NsbI TGCGCA 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PkrI GCNGC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 285, 461
PspFI CCCAGC 3 cut(s) 148, 213, 369
PspGI CCWGG 2 cut(s) 285, 461
PspN4I GGNNCC 2 cut(s) 232, 440
PspPI GGNCC 3 cut(s) 174, 283, 438
PsuI RGATCY 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 357
Rsr2I CGGWCCG 1 cut(s) 174
RsrII CGGWCCG 1 cut(s) 174
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 7 cut(s) 23, 48, 63, 116, 152, 162, 321
Sau96I GGNCC 3 cut(s) 174, 283, 438
ScrFI CCNGG 2 cut(s) 287, 463
SfaNI GCATC 1 cut(s) 464
SinI GGWCC 2 cut(s) 174, 438
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 2 cut(s) 390, 408
SsiI CCGC 2 cut(s) 11, 219
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 285, 461
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 4 cut(s) 22, 75, 405, 427
TaqI TCGA 3 cut(s) 51, 155, 324
TaqII GACCGA 2 cut(s) 162, 413
TasI AATT 2 cut(s) 390, 408
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 394, 420
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 2 cut(s) 394, 420
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 174, 438
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.