Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Reverse (-)

15988827 .. 15992040

Gene Structure 3214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGTAGGTGGGAGATCAGAGATGGGAGGCGTAAGGACAGGCTGGCTGGGACCGGTTTGGTTCTGATATCCAGAGTGAGGCTGTGTGGGGCTGGGGCGGTGGAGTGGGTGGGTAGTCTTGGCCGGTGGTTCGACGACGGAGATGGCTCGCAGATGTTCGAGGTCCGACATCTGTGGCAGAGCGGCGCGTATGGTGGCGTGTTGGTACTGGTGCCTTCCTGGACTGGGCTAACGAGCATTCACAAGATGAATAACAATAGAGTAATTCATATTCTCTTCCTCTTCACCTTCTTCATCATATTCCTCACAAGTACCGACCTTAACGCCACGGGTTGTTCTTCTCATATTCTGCCCAGCTATCACCAATCTTTGCAGTGTGAGTCACATGGTGATGTTTTTCCAGAAAAGATTAGAGAAAGCAAATGCATCATAGTAGACTTCCTGGAGGATGGAGTTATTTTAGATTTTGCAGGCTCCAATTTTGTGAATGTTGATGATTTTGCATTTGGTGCTGTTGCTAGATATCTTCAACTTGATAGAAAACAGTGTTGTTTTACCCCAAATCTGGGTGGCCACACTTGCAAGCATGGCTACAAGCATGCAGAGTTTGGGACTGCAATCACCTGGGATGATGCCCTGCAATCGAGCACGCGCTATGTTGAGTGCAAAACCTACAACCTTTTCACTTGCAACAGCCACTCGTTCGTAGCAAACTTTCTGAATCGGATATGCTACGGTGGATCGATGCATTGGAACATGATAAATGTGGCGGCTTTAGTACTGCTTAAAGGGCATTGGGTTGATGCCATGTCTGTCTTGAAGTCATTCCTCCCTTCTCTTCTGGTGCTCCGTCTAGGTATTTACACAGTTGGGTGGCCATTCGTGGTGGCGCTTTTCTCCTTCTCTTCTCTCCTCTTGCTGTGGAACCTTTCATATGGTGCAGCTGAAGACAAGAAGTTAAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009966 GO:0009968 GO:0010033 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070297 GO:0070298 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

323

Amino Acids

36.14

Weight (kDa)

8.03

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RTE1	PF05608	149 - 264	1.2e-44	RTE1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	2 cut(s)	188, 652
AciI	CCGC	3 cut(s)	98, 183, 770
AclWI	GGATC	1 cut(s)	748
AcoI	YGGCCR	3 cut(s)	121, 571, 875
AcuI	CTGAAG	1 cut(s)	966
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	207, 313, 780
AfiI	CCNNNNNNNGG	4 cut(s)	78, 225, 565, 566
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	530, 820
AjnI	CCWGG	3 cut(s)	218, 441, 623
AluBI	AGCT	2 cut(s)	357, 944
AluI	AGCT	2 cut(s)	357, 944
Alw21I	GWGCWC	2 cut(s)	650, 849
AlwI	GGATC	1 cut(s)	748
AoxI	GGCC	3 cut(s)	121, 571, 875
ApeKI	GCWGC	1 cut(s)	941
AsiGI	ACCGGT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	824
AspLEI	GCGC	3 cut(s)	188, 654, 892
AspS9I	GGNCC	2 cut(s)	51, 163
AsuHPI	GGTGA	4 cut(s)	277, 353, 401, 613
AvaII	GGWCC	2 cut(s)	51, 163
BalI	TGGCCA	2 cut(s)	573, 877
BanI	GGYRCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	954
Bbv12I	GWGCWC	2 cut(s)	650, 849
BbvI	GCAGC	1 cut(s)	953
BccI	CCATC	3 cut(s)	17, 137, 443
BciT130I	CCWGG	3 cut(s)	220, 443, 625
BfaI	CTAG	2 cut(s)	519, 854
BfoI	RGCGCY	1 cut(s)	893
BisI	GCNGC	3 cut(s)	184, 771, 942
BlsI	GCNGC	3 cut(s)	185, 772, 943
BmcAI	AGTACT	1 cut(s)	780
Bme1390I	CCNGG	3 cut(s)	220, 443, 625
Bme18I	GGWCC	2 cut(s)	51, 163
BmgT120I	GGNCC	2 cut(s)	51, 163
BmiI	GGNNCC	4 cut(s)	52, 213, 475, 926
BmrFI	CCNGG	3 cut(s)	220, 443, 625
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	4 cut(s)	435, 622, 735, 793
BmuI	ACTGGG	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	954
BpmI	CTGGAG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	743
BsaJI	CCNNGG	2 cut(s)	327, 624
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 225, 565, 566
Bse118I	RCCGGY	2 cut(s)	53, 123
Bse1I	ACTGG	2 cut(s)	213, 229
BseBI	CCWGG	3 cut(s)	220, 443, 625
BseCI	ATCGAT	1 cut(s)	743
BseDI	CCNNGG	2 cut(s)	327, 624
BseGI	GGATG	2 cut(s)	454, 634
BseLI	CCNNNNNNNGG	4 cut(s)	78, 225, 565, 566
BseNI	ACTGG	2 cut(s)	213, 229
BseRI	GAGGAG	1 cut(s)	902
BseXI	GCAGC	1 cut(s)	953
BseYI	CCCAGC	3 cut(s)	47, 92, 353
BsgI	GTGCAG	1 cut(s)	960
Bsh1236I	CGCG	2 cut(s)	188, 652
BshFI	GGCC	3 cut(s)	123, 573, 877
BshNI	GGYRCC	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	743
BsiHKAI	GWGCWC	2 cut(s)	650, 849
BsiSI	CCGG	2 cut(s)	54, 124
BslFI	GGGAC	2 cut(s)	64, 625
BslI	CCNNNNNNNGG	4 cut(s)	78, 225, 565, 566
BsmFI	GGGAC	2 cut(s)	64, 625
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	3 cut(s)	123, 573, 877
Bsp1286I	GDGCHC	2 cut(s)	650, 849
Bsp143I	GATC	2 cut(s)	15, 740
BspACI	CCGC	3 cut(s)	98, 183, 770
BspANI	GGCC	3 cut(s)	123, 573, 877
BspDI	ATCGAT	1 cut(s)	743
BspFNI	CGCG	2 cut(s)	188, 652
BspLI	GGNNCC	4 cut(s)	52, 213, 475, 926
BspPI	GGATC	1 cut(s)	748
BspT107I	GGYRCC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	53, 123
BsrI	ACTGG	2 cut(s)	213, 229
BssAI	RCCGGY	2 cut(s)	53, 123
BssECI	CCNNGG	2 cut(s)	327, 624
BssMI	GATC	2 cut(s)	15, 740
Bst2UI	CCWGG	3 cut(s)	220, 443, 625
Bst4CI	ACNGT	3 cut(s)	546, 737, 868
Bst6I	CTCTTC	4 cut(s)	281, 287, 843, 910
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	6 cut(s)	45, 149, 472, 584, 600, 650
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	454, 634
BstFNI	CGCG	2 cut(s)	188, 652
BstH2I	RGCGCY	1 cut(s)	893
BstHHI	GCGC	3 cut(s)	188, 654, 892
BstKTI	GATC	2 cut(s)	18, 743
BstMBI	GATC	2 cut(s)	15, 740
BstMWI	GCNNNNNNNGC	4 cut(s)	509, 579, 588, 790
BstNI	CCWGG	3 cut(s)	220, 443, 625
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	3 cut(s)	218, 441, 623
BstUI	CGCG	2 cut(s)	188, 652
BstV1I	GCAGC	1 cut(s)	953
BstV2I	GAAGAC	1 cut(s)	954
Bsu15I	ATCGAT	1 cut(s)	743
BsuRI	GGCC	3 cut(s)	123, 573, 877
BsuTUI	ATCGAT	1 cut(s)	743
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	454, 634
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	380, 551
Cac8I	GCNNGC	6 cut(s)	45, 149, 472, 584, 600, 650
CfoI	GCGC	3 cut(s)	188, 654, 892
Cfr10I	RCCGGY	2 cut(s)	53, 123
Cfr13I	GGNCC	2 cut(s)	51, 163
ClaI	ATCGAT	1 cut(s)	743
Csp6I	GTAC	3 cut(s)	206, 312, 779
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	5 cut(s)	386, 587, 599, 757, 808
CviQI	GTAC	3 cut(s)	206, 312, 779
DpnI	GATC	2 cut(s)	17, 742
DpnII	GATC	2 cut(s)	15, 740
DraIII	CACNNNGTG	1 cut(s)	389
EaeI	YGGCCR	3 cut(s)	121, 571, 875
Eam1104I	CTCTTC	4 cut(s)	281, 287, 843, 910
EarI	CTCTTC	4 cut(s)	281, 287, 843, 910
Eco32I	GATATC	2 cut(s)	69, 524
Eco47I	GGWCC	2 cut(s)	51, 163
Eco57I	CTGAAG	1 cut(s)	966
EcoRII	CCWGG	3 cut(s)	218, 441, 623
EcoRV	GATATC	2 cut(s)	69, 524
EcoT22I	ATGCAT	2 cut(s)	428, 750
FaeI	CATG	5 cut(s)	389, 590, 602, 760, 811
FaqI	GGGAC	2 cut(s)	64, 625
FatI	CATG	5 cut(s)	385, 586, 598, 756, 807
FauNDI	CATATG	1 cut(s)	934
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	184, 771, 942
FokI	GGATG	2 cut(s)	461, 641
Fsp4HI	GCNGC	3 cut(s)	184, 771, 942
FspBI	CTAG	2 cut(s)	519, 854
GlaI	GCGC	3 cut(s)	187, 653, 891
GluI	GCNGC	3 cut(s)	184, 771, 942
GsaI	CCCAGC	3 cut(s)	51, 96, 357
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	893
HaeIII	GGCC	3 cut(s)	123, 573, 877
HapII	CCGG	2 cut(s)	54, 124
HhaI	GCGC	3 cut(s)	188, 654, 892
Hin1II	CATG	5 cut(s)	389, 590, 602, 760, 811
Hin6I	GCGC	3 cut(s)	186, 652, 890
HinP1I	GCGC	3 cut(s)	186, 652, 890
HinfI	GANTC	2 cut(s)	380, 721
HpaII	CCGG	2 cut(s)	54, 124
HphI	GGTGA	4 cut(s)	277, 353, 401, 613
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	5 cut(s)	20, 66, 167, 720, 726
Hpy188III	TCNNGA	3 cut(s)	72, 401, 817
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	2 cut(s)	137, 140
HpyAV	CCTTC	4 cut(s)	225, 298, 843, 910
HpyCH4III	ACNGT	3 cut(s)	546, 737, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	509, 579, 588, 790
Hsp92II	CATG	5 cut(s)	389, 590, 602, 760, 811
HspAI	GCGC	3 cut(s)	186, 652, 890
Kzo9I	GATC	2 cut(s)	15, 740
LmnI	GCTCC	2 cut(s)	479, 852
Lsp1109I	GCAGC	1 cut(s)	953
LweI	GCATC	4 cut(s)	435, 622, 735, 793
MaeI	CTAG	2 cut(s)	519, 854
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	2 cut(s)	17, 742
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	2 cut(s)	15, 740
MboII	GAAGA	8 cut(s)	268, 274, 283, 330, 518, 830, 897, 959
MhlI	GDGCHC	2 cut(s)	650, 849
MlsI	TGGCCA	2 cut(s)	573, 877
MluCI	AATT	2 cut(s)	264, 478
MluNI	TGGCCA	2 cut(s)	573, 877
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	8 cut(s)	21, 72, 154, 290, 314, 439, 839, 923
Mox20I	TGGCCA	2 cut(s)	573, 877
Mph1103I	ATGCAT	2 cut(s)	428, 750
MroXI	GAANNNNTTC	1 cut(s)	824
MscI	TGGCCA	2 cut(s)	573, 877
MseI	TTAA	3 cut(s)	321, 786, 959
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	2 cut(s)	573, 877
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	2 cut(s)	54, 124
MspR9I	CCNGG	3 cut(s)	220, 443, 625
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	3 cut(s)	220, 443, 625
MvnI	CGCG	2 cut(s)	188, 652
MwoI	GCNNNNNNNGC	4 cut(s)	509, 579, 588, 790
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	2 cut(s)	15, 740
NlaIII	CATG	5 cut(s)	389, 590, 602, 760, 811
NlaIV	GGNNCC	4 cut(s)	52, 213, 475, 926
NmuCI	GTSAC	1 cut(s)	381
NsiI	ATGCAT	2 cut(s)	428, 750
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	824
PfeI	GAWTC	1 cut(s)	721
PfoI	TCCNGGA	2 cut(s)	218, 441
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	185, 772, 943
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	218, 441, 623
PspFI	CCCAGC	3 cut(s)	47, 92, 353
PspGI	CCWGG	3 cut(s)	218, 441, 623
PspN4I	GGNNCC	4 cut(s)	52, 213, 475, 926
PspPI	GGNCC	2 cut(s)	51, 163
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	3 cut(s)	207, 313, 780
RsaNI	GTAC	3 cut(s)	206, 312, 779
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	321, 786, 959
SatI	GCNGC	3 cut(s)	184, 771, 942
Sau3AI	GATC	2 cut(s)	15, 740
Sau96I	GGNCC	2 cut(s)	51, 163
ScaI	AGTACT	1 cut(s)	780
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	3 cut(s)	220, 443, 625
SduI	GDGCHC	2 cut(s)	650, 849
SfaNI	GCATC	4 cut(s)	435, 622, 735, 793
SinI	GGWCC	2 cut(s)	51, 163
SmiMI	CAYNNNNRTG	1 cut(s)	390
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	2 cut(s)	264, 478
SsiI	CCGC	3 cut(s)	98, 183, 770
SspMI	CTAG	2 cut(s)	519, 854
StyD4I	CCNGG	3 cut(s)	218, 441, 623
TaaI	ACNGT	3 cut(s)	546, 737, 868
TaqI	TCGA	4 cut(s)	132, 159, 644, 743
TasI	AATT	2 cut(s)	264, 478
TatI	WGTACW	1 cut(s)	778
TauI	GCSGC	2 cut(s)	186, 773
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	3 cut(s)	321, 786, 959
Tru9I	TTAA	3 cut(s)	321, 786, 959
TscAI	CASTG	2 cut(s)	380, 551
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	941
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	4 cut(s)	257, 263, 283, 921
TspGWI	ACGGA	2 cut(s)	153, 839
TspRI	CASTG	2 cut(s)	380, 551
VpaK11BI	GGWCC	2 cut(s)	51, 163
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	824
XspI	CTAG	2 cut(s)	519, 854
ZrmI	AGTACT	1 cut(s)	780
Zsp2I	ATGCAT	2 cut(s)	428, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.