Rroxscaffold_3G00264810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003283
Physical Location & Seq
Forward (+)
58346148 .. 58350977
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264810.1

Sequence Viewer

Length: 297 bp
ATGAGATCGAACCGAGATCGGTTCCCGACTCGGTTTTTGGTTCCGTTGCGGTCTTCACCGGGTCATGGATCAATCCGCAACATGGCCGGATGGCGCGGGCGGCGTAGGGATGCGGCGGCGTTACGTGGTGGTGTGTGGCGGCGGTGTGGTGACGTTGGAGCTAGCCGAGTCGGAAATGGTTGTCCGATGTGTTTGCTCTTTGTCGGGGAAGTTGGTTTTTCGGACGGTCCTCCGGTCTTGGGCGGTTTTTTTGGTTTTCTTGTGTTTCTGTTGTTTGGTTGTTTTTTGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.69

Weight (kDa)

11.6

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 9 cut(s) 49, 76, 96, 100, 113, 116, 139, 142, 243
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 84
AfiI CCNNNNNNNGG 3 cut(s) 65, 82, 239
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AlwI GGATC 1 cut(s) 76
AoxI GGCC 1 cut(s) 84
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 48, 161
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BcnI CCSGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 162
BisI GCNGC 4 cut(s) 101, 114, 117, 140
BlsI GCNGC 4 cut(s) 102, 115, 118, 141
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 23, 42
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 100
BmtI GCTAGC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 82, 239
BseGI GGATG 2 cut(s) 95, 115
BseLI CCNNNNNNNGG 3 cut(s) 65, 82, 239
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 1 cut(s) 86
BsiSI CCGG 3 cut(s) 59, 87, 233
BslI CCNNNNNNNGG 3 cut(s) 65, 82, 239
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 5, 16, 68
BspACI CCGC 9 cut(s) 49, 76, 96, 100, 113, 116, 139, 142, 243
BspANI GGCC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 23, 42
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 76
BssMI GATC 3 cut(s) 5, 16, 68
Bst4CI ACNGT 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 98, 163
BstF5I GGATG 2 cut(s) 95, 115
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 8, 19, 71
BstMBI GATC 3 cut(s) 5, 16, 68
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 58
BstUI CGCG 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 2 cut(s) 95, 115
Cac8I GCNNGC 2 cut(s) 98, 163
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 227
CviAII CATG 2 cut(s) 65, 82
CviJI RGCY 3 cut(s) 86, 161, 165
CviKI_1 RGCY 3 cut(s) 86, 161, 165
DpnI GATC 3 cut(s) 7, 18, 70
DpnII GATC 3 cut(s) 5, 16, 68
EaeI YGGCCR 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 227
FaeI CATG 2 cut(s) 68, 85
FaiI YATR 2 cut(s) 66, 83
FatI CATG 2 cut(s) 64, 81
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 101, 114, 117, 140
FokI GGATG 2 cut(s) 102, 122
Fsp4HI GCNGC 4 cut(s) 101, 114, 117, 140
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 95
GluI GCNGC 4 cut(s) 101, 114, 117, 140
HaeIII GGCC 1 cut(s) 86
HapII CCGG 3 cut(s) 59, 87, 233
HhaI GCGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 68, 85
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 28, 168
HpaII CCGG 3 cut(s) 59, 87, 233
HphI GGTGA 2 cut(s) 48, 161
Hpy188I TCNGA 3 cut(s) 173, 186, 223
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 2 cut(s) 124, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpySE526I ACGT 2 cut(s) 124, 153
Hsp92II CATG 2 cut(s) 68, 85
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 5, 16, 68
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 3 cut(s) 72, 100, 246
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 124, 153
MaeIII GTNAC 2 cut(s) 120, 149
MalI GATC 3 cut(s) 7, 18, 70
MboI GATC 3 cut(s) 5, 16, 68
MboII GAAGA 1 cut(s) 45
MlyI GAGTC 2 cut(s) 22, 177
MmeI TCCRAC 2 cut(s) 136, 151
MnlI CCTC 1 cut(s) 240
MseI TTAA 1 cut(s) 295
MspI CCGG 3 cut(s) 59, 87, 233
MspR9I CCNGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 60
NdeII GATC 3 cut(s) 5, 16, 68
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 2 cut(s) 68, 85
NlaIV GGNNCC 2 cut(s) 23, 42
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 149
PkrI GCNGC 4 cut(s) 102, 115, 118, 141
PleI GAGTC 2 cut(s) 22, 176
PpsI GAGTC 2 cut(s) 22, 176
Ppu21I YACGTR 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 23, 42
PspPI GGNCC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 4 cut(s) 101, 114, 117, 140
Sau3AI GATC 3 cut(s) 5, 16, 68
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 22, 177
ScrFI CCNGG 1 cut(s) 60
SetI ASST 3 cut(s) 127, 156, 163
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 1 cut(s) 227
SsiI CCGC 9 cut(s) 49, 76, 96, 100, 113, 116, 139, 142, 243
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 2 cut(s) 127, 156
TaqI TCGA 1 cut(s) 8
TauI GCSGC 4 cut(s) 103, 116, 119, 142
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 227
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.