Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011904.1

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Forward (+)

78374 .. 79018

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011904.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgggttcgacacagtccatgcaagtggtggaagagagcgaagaagacggagaagaagaagaagaagaagaagaggtggaggaaggagaagagatcaacggcattggcgcgcccgtcagaagtgaattggacaaggatgatgatttggtcaagaaggttctggaacaagagcccgagatgctctgccacgcatccgcatcgccgctctcgcctcagctctcctccctcgggacgccgcgactcggaccctccatcaaggtgtgggacccctacaacgtcctcgcgccccccacgccgcctcattcggtcttctcccggagcttctccttggaggacgagcgcttcgtgaccaccaccacggaggtgtttctggtttgtcacggcgagtgtgagttgaatttgaggcccgatttggtgggtggccggtgcccccaggctgcgttgactcccaatggcaagaggcaagcgagggccttggcggtcttcttgaattcccagagggtcaccttcaatgccgtttacacctctcctttggatcgtgcgcgctcaatggcggtttctgtctgtcaggtatataaaaaatatttattggcattttcaattcaatcttgcatcgaaaacctcgagcctctagtcctcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

214

Amino Acids

23.64

Weight (kDa)

4.5

Isoelectric Point (pI)

67.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	426
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	4 cut(s)	110, 238, 284, 544
AciI	CCGC	6 cut(s)	195, 203, 236, 296, 479, 554
AclWI	GGATC	1 cut(s)	543
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	397, 490
AcyI	GRCGYC	1 cut(s)	233
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	228, 242
AgsI	TTSAA	5 cut(s)	397, 490, 511, 600, 605
AjnI	CCWGG	1 cut(s)	432
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	2 cut(s)	217, 321
AluI	AGCT	2 cut(s)	217, 321
AlwI	GGATC	1 cut(s)	543
Ama87I	CYCGRG	3 cut(s)	173, 227, 623
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	3 cut(s)	404, 421, 471
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	397, 490
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AscI	GGCGCGCC	1 cut(s)	108
AspLEI	GCGC	6 cut(s)	110, 112, 286, 342, 544, 546
AspS9I	GGNCC	4 cut(s)	245, 265, 405, 471
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	496
AvaI	CYCGRG	3 cut(s)	173, 227, 623
AvaII	GGWCC	2 cut(s)	245, 265
BaeGI	GKGCMC	1 cut(s)	431
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	3 cut(s)	51, 301, 475
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	3 cut(s)	115, 397, 500
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	1 cut(s)	434
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	632
BfoI	RGCGCY	1 cut(s)	343
BisI	GCNGC	4 cut(s)	203, 236, 296, 438
BlsI	GCNGC	4 cut(s)	204, 237, 297, 439
Bme1390I	CCNGG	2 cut(s)	316, 434
Bme18I	GGWCC	2 cut(s)	245, 265
BmeT110I	CYCGRG	3 cut(s)	173, 227, 623
BmgT120I	GGNCC	4 cut(s)	245, 265, 405, 471
BmiI	GGNNCC	4 cut(s)	247, 266, 267, 428
BmrFI	CCNGG	2 cut(s)	316, 434
BmsI	GCATC	4 cut(s)	168, 200, 206, 621
BpiI	GAAGAC	3 cut(s)	51, 301, 475
Bpu10I	CCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	5 cut(s)	226, 327, 357, 432, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 242
Bse118I	RCCGGY	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	5 cut(s)	226, 327, 357, 432, 474
BseGI	GGATG	2 cut(s)	142, 191
BseLI	CCNNNNNNNGG	2 cut(s)	228, 242
BseMII	CTCAG	1 cut(s)	227
BsePI	GCGCGC	2 cut(s)	108, 542
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	424
Bsh1236I	CGCG	4 cut(s)	110, 238, 284, 544
BshFI	GGCC	3 cut(s)	406, 423, 473
BshNI	GGYRCC	1 cut(s)	426
BsiHKCI	CYCGRG	3 cut(s)	173, 227, 623
BsiSI	CCGG	2 cut(s)	316, 424
BslFI	GGGAC	2 cut(s)	244, 278
BslI	CCNNNNNNNGG	2 cut(s)	228, 242
BsmFI	GGGAC	2 cut(s)	244, 278
BsnI	GGCC	3 cut(s)	406, 423, 473
BsoBI	CYCGRG	3 cut(s)	173, 227, 623
Bsp1286I	GDGCHC	2 cut(s)	174, 431
Bsp143I	GATC	2 cut(s)	93, 535
BspACI	CCGC	6 cut(s)	195, 203, 236, 296, 479, 554
BspANI	GGCC	3 cut(s)	406, 423, 473
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	4 cut(s)	110, 238, 284, 544
BspLI	GGNNCC	4 cut(s)	247, 266, 267, 428
BspPI	GGATC	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	5 cut(s)	226, 327, 357, 432, 474
BssHII	GCGCGC	2 cut(s)	108, 542
BssMI	GATC	2 cut(s)	93, 535
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	327, 474
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	3 cut(s)	27, 66, 84
BstACI	GRCGYC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	110, 465, 544
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	357
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	142, 191
BstFNI	CGCG	4 cut(s)	110, 238, 284, 544
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	6 cut(s)	110, 112, 286, 342, 544, 546
BstKTI	GATC	2 cut(s)	96, 538
BstMBI	GATC	2 cut(s)	93, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 208, 292
BstNI	CCWGG	1 cut(s)	434
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	314, 432
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	4 cut(s)	110, 238, 284, 544
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	3 cut(s)	51, 301, 475
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	406, 423, 473
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	142, 191
Cac8I	GCNNGC	3 cut(s)	110, 465, 544
CfoI	GCGC	6 cut(s)	110, 112, 286, 342, 544, 546
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	4 cut(s)	245, 265, 405, 471
CseI	GACGC	1 cut(s)	241
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	8 cut(s)	172, 217, 321, 406, 423, 437, 473, 628
CviKI_1	RGCY	8 cut(s)	172, 217, 321, 406, 423, 437, 473, 628
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	95, 537
DpnII	GATC	2 cut(s)	93, 535
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	3 cut(s)	27, 66, 84
EarI	CTCTTC	3 cut(s)	27, 66, 84
Eco130I	CCWWGG	2 cut(s)	327, 474
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	245, 265
Eco47III	AGCGCT	1 cut(s)	341
Eco88I	CYCGRG	3 cut(s)	173, 227, 623
Eco91I	GGTNACC	1 cut(s)	502
EcoO109I	RGGNCCY	2 cut(s)	265, 471
EcoO65I	GGTNACC	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	327, 474
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	327, 474
FaeI	CATG	1 cut(s)	22
FaiI	YATR	3 cut(s)	20, 574, 576
FaqI	GGGAC	2 cut(s)	244, 278
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	203, 236, 296, 438
FokI	GGATG	2 cut(s)	149, 178
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	203, 236, 296, 438
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	6 cut(s)	109, 111, 285, 341, 543, 545
GluI	GCNGC	4 cut(s)	203, 236, 296, 438
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	406, 423, 473
HapII	CCGG	2 cut(s)	316, 424
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	6 cut(s)	110, 112, 286, 342, 544, 546
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	6 cut(s)	108, 110, 284, 340, 542, 544
HinP1I	GCGC	6 cut(s)	108, 110, 284, 340, 542, 544
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	240, 445
HpaII	CCGG	2 cut(s)	316, 424
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	444, 520
Hpy188I	TCNGA	2 cut(s)	119, 245
Hpy188III	TCNNGA	5 cut(s)	151, 161, 229, 346, 487
Hpy8I	GTNNAC	2 cut(s)	444, 520
HpyAV	CCTTC	3 cut(s)	77, 148, 517
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	22, 612
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 208, 292
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	6 cut(s)	108, 110, 284, 340, 542, 544
KflI	GGGWCCC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	93, 535
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	146, 329, 356, 419, 437, 446, 509, 554
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	4 cut(s)	168, 200, 206, 621
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	346, 377, 502
MalI	GATC	2 cut(s)	95, 537
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	93, 535
MhlI	GDGCHC	2 cut(s)	174, 431
MluCI	AATT	4 cut(s)	125, 397, 490, 600
MlyI	GAGTC	2 cut(s)	234, 439
MslI	CAYNNNNRTG	3 cut(s)	23, 257, 362
MspI	CCGG	2 cut(s)	316, 424
MspR9I	CCNGG	2 cut(s)	316, 434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	4 cut(s)	110, 238, 284, 544
MwoI	GCNNNNNNNGC	3 cut(s)	178, 208, 292
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	93, 535
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	4 cut(s)	247, 266, 267, 428
NmuCI	GTSAC	3 cut(s)	346, 377, 502
OliI	CACNNNNGTG	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	623
PalAI	GGCGCGCC	1 cut(s)	108
PauI	GCGCGC	2 cut(s)	108, 542
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 621
PflFI	GACNNNGTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	204, 237, 297, 439
PleI	GAGTC	2 cut(s)	234, 439
PpsI	GAGTC	2 cut(s)	234, 439
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	432
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	4 cut(s)	247, 266, 267, 428
PspPI	GGNCC	4 cut(s)	245, 265, 405, 471
PspPPI	RGGWCCY	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	623
PsyI	GACNNNGTC	1 cut(s)	13
PteI	GCGCGC	2 cut(s)	108, 542
RseI	CAYNNNNRTG	3 cut(s)	23, 257, 362
SatI	GCNGC	4 cut(s)	203, 236, 296, 438
Sau3AI	GATC	2 cut(s)	93, 535
Sau96I	GGNCC	4 cut(s)	245, 265, 405, 471
SchI	GAGTC	2 cut(s)	234, 439
ScrFI	CCNGG	2 cut(s)	316, 434
SduI	GDGCHC	2 cut(s)	174, 431
SfaNI	GCATC	4 cut(s)	168, 200, 206, 621
Sfr274I	CTCGAG	1 cut(s)	623
SgsI	GGCGCGCC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	245, 265
SlaI	CTCGAG	1 cut(s)	623
SmiMI	CAYNNNNRTG	3 cut(s)	23, 257, 362
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	4 cut(s)	125, 397, 490, 600
SsiI	CCGC	6 cut(s)	195, 203, 236, 296, 479, 554
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	2 cut(s)	314, 432
StyI	CCWWGG	2 cut(s)	327, 474
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	8, 615, 624
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	125, 397, 490, 600
TauI	GCSGC	3 cut(s)	205, 238, 298
TseFI	GTSAC	3 cut(s)	346, 377, 502
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	3 cut(s)	346, 377, 502
TspGWI	ACGGA	2 cut(s)	63, 374
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	245, 265
XapI	RAATTY	2 cut(s)	397, 490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XhoI	CTCGAG	1 cut(s)	623
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.