Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Forward (+)

28029112 .. 28029843

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG155500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGATCGAACCGGGATCAGTTCCTGACTCGGTTTTGGTTCTGGTTGCGGTCTTCAGCTGGGTTATGGATCAGTCTGCAACATGGCCAGACGGCGCGGCGGCGTAGGGATGCGGCGGCGCGACGTGGTGGTGTGTGGCAGCGGTGTGGTGACGTTGGAGCTGCCCGGAGTCGGAAATGTTTGTCCGATGTGTTTGCTCTTTGTCGGGGAAGTTGGTTTTTCGGACGATCCTCTGGTCTTGGGCGGTTTTTCTGGTTTTCTTGTGTTTCCTGTTTTTTGGTTGTATTTTGGTTGGTTACTGCTGTTGTCTTGTTGACAATAAGTCCCTCCTCTTTTGAGCGAGGGTTGGGTTCCTCCTCTTTTGAGCGAGGCTTGGGGTTGTCGGTGCTTTCTGGTTGTCAATATGATGGTGATTTACCCTTACACGGGGTCTGGCAGTTTTGGATCACGGTGTCCGAACGGGTGAATCGGTTCATCTTTTTGTTGATGGCGGGGTTGTATCGTTACAATTGGGTTTGGTTGTTCCTTGGTGTTGCCAGTCAGGTTTGGTTGTGGTTTTGGTTGTTCTTGGGTGTAGCCGGTCAGGTTTGGTTGTTATCCAATATTGCCTGCAGGCGTAAAATTTGGTTAGGGGTTGTGCCTTTTTGGCTCATGGATGTCATTTGTTTTGACTGTCCCTTAATCGGTCGTTCCACGATGGTTTCAATGCTTTGTAATATGTTTGTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

28.06

Weight (kDa)

10.45

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	97, 121
AciI	CCGC	8 cut(s)	49, 97, 100, 113, 116, 142, 244, 491
AclWI	GGATC	4 cut(s)	24, 77, 222, 452
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	4 cut(s)	171, 425, 426, 683
AgsI	TTSAA	1 cut(s)	705
AhdI	GACNNNNNGTC	1 cut(s)	321
AjiI	CACGTC	1 cut(s)	125
AluBI	AGCT	2 cut(s)	59, 161
AluI	AGCT	2 cut(s)	59, 161
AlwI	GGATC	4 cut(s)	24, 77, 222, 452
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	139, 161
ApoI	RAATTY	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	97, 121
AsuC2I	CCSGG	2 cut(s)	14, 166
AsuHPI	GGTGA	3 cut(s)	161, 422, 475
BalI	TGGCCA	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	148, 151
BccI	CCATC	3 cut(s)	401, 481, 691
BceAI	ACGGC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcnI	CCSGG	2 cut(s)	14, 166
BfmI	CTRYAG	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	646
BisI	GCNGC	6 cut(s)	98, 101, 114, 117, 140, 162
BlsI	GCNGC	6 cut(s)	99, 102, 115, 118, 141, 163
Bme1390I	CCNGG	2 cut(s)	14, 166
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmgBI	CACGTC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	14, 166
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	14, 166
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 425, 426, 683
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	115, 661
BseLI	CCNNNNNNNGG	4 cut(s)	171, 425, 426, 683
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	2 cut(s)	319, 346
BseXI	GCAGC	2 cut(s)	148, 151
BseYI	CCCAGC	1 cut(s)	59
Bsh1236I	CGCG	2 cut(s)	97, 121
Bsh1285I	CGRYCG	1 cut(s)	688
BshFI	GGCC	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	688
BsiSI	CCGG	3 cut(s)	13, 166, 579
BslFI	GGGAC	2 cut(s)	309, 660
BslI	CCNNNNNNNGG	4 cut(s)	171, 425, 426, 683
BsmFI	GGGAC	2 cut(s)	309, 660
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	5, 16, 69, 227, 444
BspACI	CCGC	8 cut(s)	49, 97, 100, 113, 116, 142, 244, 491
BspANI	GGCC	1 cut(s)	87
BspFNI	CGCG	2 cut(s)	97, 121
BspLI	GGNNCC	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	614
BspPI	GGATC	4 cut(s)	24, 77, 222, 452
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	5 cut(s)	5, 16, 69, 227, 444
BssT1I	CCWWGG	1 cut(s)	526
Bst4CI	ACNGT	2 cut(s)	451, 674
BstC8I	GCNNGC	2 cut(s)	610, 614
BstF5I	GGATG	2 cut(s)	115, 661
BstFNI	CGCG	2 cut(s)	97, 121
BstHHI	GCGC	2 cut(s)	97, 121
BstKTI	GATC	5 cut(s)	8, 19, 72, 230, 447
BstMBI	GATC	5 cut(s)	5, 16, 69, 227, 444
BstMCI	CGRYCG	1 cut(s)	688
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	12, 164
BstSFI	CTRYAG	1 cut(s)	610
BstUI	CGCG	2 cut(s)	97, 121
BstV1I	GCAGC	2 cut(s)	148, 151
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	115, 661
Cac8I	GCNNGC	2 cut(s)	610, 614
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	2 cut(s)	97, 121
Cfr10I	RCCGGY	1 cut(s)	578
CviAII	CATG	2 cut(s)	83, 652
CviJI	RGCY	6 cut(s)	59, 87, 161, 372, 578, 649
CviKI_1	RGCY	6 cut(s)	59, 87, 161, 372, 578, 649
DpnI	GATC	5 cut(s)	7, 18, 71, 229, 446
DpnII	GATC	5 cut(s)	5, 16, 69, 227, 444
DriI	GACNNNNNGTC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	2 cut(s)	86, 655
FaiI	YATR	5 cut(s)	67, 84, 405, 653, 719
FaqI	GGGAC	2 cut(s)	309, 660
FatI	CATG	2 cut(s)	82, 651
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	6 cut(s)	98, 101, 114, 117, 140, 162
FokI	GGATG	2 cut(s)	122, 668
Fsp4HI	GCNGC	6 cut(s)	98, 101, 114, 117, 140, 162
GlaI	GCGC	2 cut(s)	96, 120
GluI	GCNGC	6 cut(s)	98, 101, 114, 117, 140, 162
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	13, 166, 579
HhaI	GCGC	2 cut(s)	97, 121
Hin1II	CATG	2 cut(s)	86, 655
Hin6I	GCGC	2 cut(s)	95, 119
HinP1I	GCGC	2 cut(s)	95, 119
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	3 cut(s)	28, 169, 466
HpaII	CCGG	3 cut(s)	13, 166, 579
HphI	GGTGA	3 cut(s)	161, 422, 475
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	4 cut(s)	174, 187, 224, 457
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	451, 674
HpyCH4IV	ACGT	2 cut(s)	124, 153
HpyCH4V	TGCA	2 cut(s)	79, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
HpySE526I	ACGT	2 cut(s)	124, 153
Hsp92II	CATG	2 cut(s)	86, 655
HspAI	GCGC	2 cut(s)	95, 119
Kzo9I	GATC	5 cut(s)	5, 16, 69, 227, 444
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	2 cut(s)	148, 151
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	2 cut(s)	124, 153
MaeIII	GTNAC	3 cut(s)	149, 295, 503
MalI	GATC	5 cut(s)	7, 18, 71, 229, 446
MboI	GATC	5 cut(s)	5, 16, 69, 227, 444
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	2 cut(s)	508, 621
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	22, 178
MmeI	TCCRAC	2 cut(s)	136, 152
MnlI	CCTC	7 cut(s)	241, 335, 337, 340, 362, 364, 367
Mox20I	TGGCCA	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	470
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	2 cut(s)	680, 730
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	59, 142
MspI	CCGG	3 cut(s)	13, 166, 579
MspR9I	CCNGG	2 cut(s)	14, 166
MunI	CAATTG	1 cut(s)	508
MvnI	CGCG	2 cut(s)	97, 121
MwoI	GCNNNNNNNGC	1 cut(s)	646
NciI	CCSGG	2 cut(s)	14, 166
NdeII	GATC	5 cut(s)	5, 16, 69, 227, 444
NlaIII	CATG	2 cut(s)	86, 655
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	6 cut(s)	99, 102, 115, 118, 141, 163
PleI	GAGTC	2 cut(s)	22, 177
PpsI	GAGTC	2 cut(s)	22, 177
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	614
PstNI	CAGNNNCTG	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	680, 730
SatI	GCNGC	6 cut(s)	98, 101, 114, 117, 140, 162
Sau3AI	GATC	5 cut(s)	5, 16, 69, 227, 444
SbfI	CCTGCAGG	1 cut(s)	614
SchI	GAGTC	2 cut(s)	22, 178
ScrFI	CCNGG	2 cut(s)	14, 166
SdaI	CCTGCAGG	1 cut(s)	614
SetI	ASST	6 cut(s)	61, 127, 156, 163, 546, 588
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	610
Sse8387I	CCTGCAGG	1 cut(s)	614
Sse9I	AATT	2 cut(s)	508, 621
SsiI	CCGC	8 cut(s)	49, 97, 100, 113, 116, 142, 244, 491
SspI	AATATT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	12, 164
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	2 cut(s)	451, 674
TaiI	ACGT	2 cut(s)	127, 156
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	2 cut(s)	508, 621
TauI	GCSGC	4 cut(s)	100, 103, 116, 119
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	2 cut(s)	680, 730
Tru9I	TTAA	2 cut(s)	680, 730
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	139, 161
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	463, 716
XapI	RAATTY	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.