RchiOBHm_Chr4g0405391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003283
Physical Location & Seq
Forward (+)
25872093 .. 25872448
356 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37688

Sequence Viewer

Length: 252 bp
ATGCCATTGTTATGGTGTCGTGGTCATTCTGCTGTGTCTTGGTCTGGTCTTTTGTCGTTGCTCTCTGGTTATCAACGTGAAGGTGAATCATCCTTATACGTGGTCTGTCTGTTTTGGGACACAGTGTCCGAACGGGTGAAAACAGTTCATCTTAATGTTGGTGGCTGGGTTGTATCGGTACAGGTTTGGTTGTTACTCATTGTAGCTCGCGGGTATGAGCGTAAAATTTGGTTAAGGGTTGAGACTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.57

Weight (kDa)

8.77

Isoelectric Point (pI)

24.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 225
AfaI GTAC 1 cut(s) 180
AhdI GACNNNNNGTC 1 cut(s) 124
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 95, 148
BcoDI GTCTC 1 cut(s) 236
BmeRI GACNNNNNGTC 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 100
BseGI GGATG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 131
BspACI CCGC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 124, 145
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 236
BstUI CGCG 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 179
CviJI RGCY 2 cut(s) 165, 206
CviKI_1 RGCY 2 cut(s) 165, 206
CviQI GTAC 1 cut(s) 179
DriI GACNNNNNGTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 124
FaiI YATR 3 cut(s) 13, 97, 216
FaqI GGGAC 1 cut(s) 131
FauI CCCGC 1 cut(s) 203
FokI GGATG 1 cut(s) 76
GsaI CCCAGC 1 cut(s) 169
HinfI GANTC 1 cut(s) 86
HphI GGTGA 2 cut(s) 95, 148
Hpy188I TCNGA 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 124, 145
HpyCH4IV ACGT 2 cut(s) 76, 99
HpySE526I ACGT 2 cut(s) 76, 99
LpnPI CCDG 4 cut(s) 30, 51, 151, 167
MaeII ACGT 2 cut(s) 76, 99
MaeIII GTNAC 1 cut(s) 192
MluCI AATT 1 cut(s) 225
MseI TTAA 2 cut(s) 153, 233
MslI CAYNNNNRTG 2 cut(s) 10, 153
MvnI CGCG 1 cut(s) 210
PfeI GAWTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 165
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 2 cut(s) 10, 153
SaqAI TTAA 2 cut(s) 153, 233
SetI ASST 5 cut(s) 79, 85, 102, 186, 208
SmiMI CAYNNNNRTG 2 cut(s) 10, 153
Sse9I AATT 1 cut(s) 225
SsiI CCGC 1 cut(s) 210
TaaI ACNGT 2 cut(s) 124, 145
TaiI ACGT 2 cut(s) 79, 102
TasI AATT 1 cut(s) 225
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 153, 233
Tru9I TTAA 2 cut(s) 153, 233
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 129
XapI RAATTY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.