RLG00000018993

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003283
Physical Location & Seq
Forward (+)
44270704 .. 44271357
654 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018993

Sequence Viewer

Length: 654 bp
ATGGGAGGCGGAAGGACAGGCTGGCTGGGACCGGTTGGGATCGGAGGTCGGTCCGGTTTGGTTCTGATATCCGGAGTGAGGCTGTGTGGGGCTGGGGCGGTGGAATGGGTGGGTAGTCTTGGCGGGTGGTTCGACGGCGGAGATGGCTCGCAGATGTTCGAGGTCCGACATCGGTGGCGGAGCAGCGCGTATGGTGGTGTGTTGGTGCAGATGCCTTCCTGGACTAGGCTAATGAGGTGGGGCTTGGCTGCCTTAGCTCTCTGGACCTGGGCTTGTTATTTACTTATAGTTGGTGGTTTTTGGTTAGGTATAATAAGTCCCTCCTCAATTGAGCGAGGGTTAGTTTGTTTTGGGTTCATGGGTGTTTCGTGGTCTGGACTTTTGTCGGTGCTTTTTGGTTATCAACGTGATGGTGAATCACCCTTACACGTGGTCTGGCGGTTTTGGATCGCGGTGTTCGAACGGGTGAAAATAGTTCATCGTAATGTTGGTGGCTGGGTTGTATCGGTATATGTTTGGTGGTTACTCATTGTAGCTCGCGGGTATGAGCGTAAAATTTGGTTAGGGGTTGAGCCTTTTTGGCTCACGGAAGTCACTCATGTTGACAGTCTCGTAACTATGGATCTAATGTTATGCAATCTGTTTGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.21

Weight (kDa)

9.07

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 188, 452, 540
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 8 cut(s) 9, 98, 123, 138, 178, 439, 452, 540
AclWI GGATC 3 cut(s) 47, 455, 630
AcsI RAATTY 1 cut(s) 555
AcvI CACGTG 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 78, 225
AflIII ACRYGT 1 cut(s) 427
AgeI ACCGGT 1 cut(s) 31
AjnI CCWGG 2 cut(s) 218, 266
AluBI AGCT 2 cut(s) 257, 536
AluI AGCT 2 cut(s) 257, 536
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 3 cut(s) 47, 455, 630
Aor13HI TCCGGA 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 183, 248
ApoI RAATTY 1 cut(s) 555
AsiGI ACCGGT 1 cut(s) 31
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 4 cut(s) 29, 51, 163, 264
AsuHPI GGTGA 3 cut(s) 411, 425, 478
AsuII TTCGAA 1 cut(s) 459
AvaII GGWCC 4 cut(s) 29, 51, 163, 264
BbrPI CACGTG 1 cut(s) 430
BbvI GCAGC 2 cut(s) 195, 235
BccI CCATC 2 cut(s) 137, 404
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 220, 268
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 580
BisI GCNGC 2 cut(s) 184, 249
BlsI GCNGC 2 cut(s) 185, 250
Bme1390I CCNGG 2 cut(s) 220, 268
Bme18I GGWCC 4 cut(s) 29, 51, 163, 264
BmgT120I GGNCC 4 cut(s) 29, 51, 163, 264
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 220, 268
BmsI GCATC 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 459
BsaAI YACGTR 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 3 cut(s) 31, 53, 71
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 225
Bse118I RCCGGY 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 2 cut(s) 220, 268
BseDI CCNNGG 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 78, 225
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 2 cut(s) 195, 235
BseYI CCCAGC 3 cut(s) 25, 92, 495
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 3 cut(s) 188, 452, 540
BshTI ACCGGT 1 cut(s) 31
BsiSI CCGG 3 cut(s) 32, 54, 72
BslFI GGGAC 2 cut(s) 42, 303
BslI CCNNNNNNNGG 2 cut(s) 78, 225
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 42, 303
Bsp119I TTCGAA 1 cut(s) 459
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 3 cut(s) 39, 447, 622
BspACI CCGC 8 cut(s) 9, 98, 123, 138, 178, 439, 452, 540
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 3 cut(s) 188, 452, 540
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 3 cut(s) 47, 455, 630
BspT104I TTCGAA 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 39, 447, 622
Bst2UI CCWGG 2 cut(s) 220, 268
Bst4CI ACNGT 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 23, 149, 538
BstDEI CTNAG 1 cut(s) 253
BstENI CCTNNNNNAGG 1 cut(s) 223
BstFNI CGCG 3 cut(s) 188, 452, 540
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 3 cut(s) 42, 450, 625
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 3 cut(s) 39, 447, 622
BstMWI GCNNNNNNNGC 3 cut(s) 144, 254, 580
BstNI CCWGG 2 cut(s) 220, 268
BstPAI GACNNNNGTC 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 218, 266
BstUI CGCG 3 cut(s) 188, 452, 540
BstV1I GCAGC 2 cut(s) 195, 235
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
Cac8I GCNNGC 3 cut(s) 23, 149, 538
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 4 cut(s) 29, 51, 163, 264
CpoI CGGWCCG 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 31
CspI CGGWCCG 1 cut(s) 51
CviAII CATG 2 cut(s) 358, 599
DdeI CTNAG 1 cut(s) 253
DpnI GATC 3 cut(s) 41, 449, 624
DpnII GATC 3 cut(s) 39, 447, 622
EciI GGCGGA 3 cut(s) 24, 153, 193
Eco32I GATATC 1 cut(s) 69
Eco47I GGWCC 4 cut(s) 29, 51, 163, 264
Eco72I CACGTG 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 218, 266
EcoRV GATATC 1 cut(s) 69
FaeI CATG 2 cut(s) 361, 602
FaqI GGGAC 2 cut(s) 42, 303
FatI CATG 2 cut(s) 357, 598
FauI CCCGC 2 cut(s) 116, 533
Fnu4HI GCNGC 2 cut(s) 184, 249
Fsp4HI GCNGC 2 cut(s) 184, 249
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 187
GluI GCNGC 2 cut(s) 184, 249
GsaI CCCAGC 3 cut(s) 29, 96, 499
HapII CCGG 3 cut(s) 32, 54, 72
HhaI GCGC 1 cut(s) 188
Hin1II CATG 2 cut(s) 361, 602
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 1 cut(s) 416
HpaII CCGG 3 cut(s) 32, 54, 72
HphI GGTGA 3 cut(s) 411, 425, 478
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 3 cut(s) 44, 66, 167
Hpy188III TCNNGA 3 cut(s) 72, 262, 375
Hpy8I GTNNAC 1 cut(s) 604
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 6, 225
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 2 cut(s) 406, 429
HpyCH4V TGCA 2 cut(s) 208, 636
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 254, 580
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 2 cut(s) 406, 429
Hsp92II CATG 2 cut(s) 361, 602
HspAI GCGC 1 cut(s) 186
Kpn2I TCCGGA 1 cut(s) 71
Kzo9I GATC 3 cut(s) 39, 447, 622
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 2 cut(s) 195, 235
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 225
MaeII ACGT 2 cut(s) 406, 429
MaeIII GTNAC 3 cut(s) 522, 592, 613
MalI GATC 3 cut(s) 41, 449, 624
MboI GATC 3 cut(s) 39, 447, 622
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 1 cut(s) 622
MluCI AATT 2 cut(s) 327, 555
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 7 cut(s) 38, 72, 154, 228, 329, 331, 334
MroI TCCGGA 1 cut(s) 71
MseI TTAA 1 cut(s) 652
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 3 cut(s) 32, 54, 72
MspR9I CCNGG 2 cut(s) 220, 268
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 2 cut(s) 220, 268
MvnI CGCG 3 cut(s) 188, 452, 540
MwoI GCNNNNNNNGC 3 cut(s) 144, 254, 580
NdeII GATC 3 cut(s) 39, 447, 622
NlaIII CATG 2 cut(s) 361, 602
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 592
NspV TTCGAA 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 2 cut(s) 185, 250
PmaCI CACGTG 1 cut(s) 430
PmlI CACGTG 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 430
PshAI GACNNNNGTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 218, 266
PspCI CACGTG 1 cut(s) 430
PspFI CCCAGC 3 cut(s) 25, 92, 495
PspGI CCWGG 2 cut(s) 218, 266
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 4 cut(s) 29, 51, 163, 264
PsuI RGATCY 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 483
Rsr2I CGGWCCG 1 cut(s) 51
RsrII CGGWCCG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 652
SatI GCNGC 2 cut(s) 184, 249
Sau3AI GATC 3 cut(s) 39, 447, 622
Sau96I GGNCC 4 cut(s) 29, 51, 163, 264
ScrFI CCNGG 2 cut(s) 220, 268
SetI ASST 9 cut(s) 49, 165, 239, 259, 269, 310, 409, 432, 538
SfaNI GCATC 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 459
SinI GGWCC 4 cut(s) 29, 51, 163, 264
SmiMI CAYNNNNRTG 1 cut(s) 483
Sse9I AATT 2 cut(s) 327, 555
SsiI CCGC 8 cut(s) 9, 98, 123, 138, 178, 439, 452, 540
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 218, 266
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 2 cut(s) 409, 432
TaqI TCGA 3 cut(s) 132, 159, 459
TaqII GACCGA 1 cut(s) 39
TasI AATT 2 cut(s) 327, 555
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 1 cut(s) 652
Tru9I TTAA 1 cut(s) 652
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 183, 248
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 346, 467
TspGWI ACGGA 1 cut(s) 602
VpaK11BI GGWCC 4 cut(s) 29, 51, 163, 264
XagI CCTNNNNNAGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 555
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.