RchiOBHm_Chr2g0158851

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
75009870 .. 75010214
345 bp
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UTR
Exon/CDS
Intron
PRQ52752

Sequence Viewer

Length: 204 bp
ATGGGCCTGAGTGATCTCTTTGGTGACCCTTTTGGGCTTTTGTTCTTGGGTCTCTCCAGTGGTCTTTTGCTTTCGCGTGATGGTGAATCACCCTTACATGTGGTCTGGTTGTTTTGGGAGGCGATGTCCAAACGGGTGGAAACAGTTCATCTTAATGCTGGTGGCGGGGTTGTATCGTTATACATAGGTCTGGTTATAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.15

Weight (kDa)

4.92

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 76
AciI CCGC 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 35, 81, 95
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bse1I ACTGG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 6
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 6
BspFNI CGCG 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 57
BssMI GATC 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 8
BstEII GGTNACC 1 cut(s) 23
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 101
BstPI GGTNACC 1 cut(s) 23
BstUI CGCG 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 6, 37
CviKI_1 RGCY 2 cut(s) 6, 37
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
FaeI CATG 1 cut(s) 101
FaiI YATR 4 cut(s) 99, 181, 185, 197
FatI CATG 1 cut(s) 97
FauI CCCGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 1 cut(s) 6
Hin1II CATG 1 cut(s) 101
HinfI GANTC 1 cut(s) 86
HphI GGTGA 3 cut(s) 35, 81, 95
HpyCH4III ACNGT 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 1 cut(s) 101
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 20, 70, 91, 144, 176
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MnlI CCTC 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 2 cut(s) 153, 202
MslI CAYNNNNRTG 1 cut(s) 153
MvnI CGCG 1 cut(s) 76
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 101
PciI ACATGT 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 86
PscI ACATGT 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 153, 202
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 4
SetI ASST 2 cut(s) 190, 202
SmiMI CAYNNNNRTG 1 cut(s) 153
SsiI CCGC 1 cut(s) 165
TaaI ACNGT 1 cut(s) 145
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 153, 202
Tru9I TTAA 2 cut(s) 153, 202
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 64
XceI RCATGY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.