RchiOBHm_Chr7g0239361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003283
Physical Location & Seq
Forward (+)
64813810 .. 64814334
525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21450

Sequence Viewer

Length: 426 bp
ATGTTTGCCTGCTTCGCTTGCTTTTTGTTGGGGGGGGGGGGGTGGTGTTTAGGTCGGGCCTTTGTTCTTGGGTCTCTCTGGTGGTCTTTTGTTTCCGTGTCGATGCCATTGTTATGGTGTCATGGTCGTTTTGCTGTGTCATGGTCTGGTCTTTTGTCGGTGCTTTCTGGTTATCAACGTGATGGTGAATCACCCTTACACGTGGTCTGGCTGTTTCGGGACGCGGTGTCCGAACGGGTGAAAACAGTTCATTTTAATGTTGGTGGCTGGGTTGTATCAGTACAGGTTTGGTTGTTAATCATTGTAGCTTGCAGGTATGAGCATAAAATTTGGTTAGGGGTTGGCTCCTTGTGGCTCATGGAAGTCATTCATGTTGACGGTCTCGTAACTATGGATCCAATGTTTTGTAATCTATTTGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.92

Weight (kDa)

6.93

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AccII CGCG 1 cut(s) 224
AciI CCGC 1 cut(s) 224
AclWI GGATC 2 cut(s) 389, 402
AcsI RAATTY 1 cut(s) 327
AcvI CACGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 199
AhdI GACNNNNNGTC 1 cut(s) 226
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 78, 386
AlwI GGATC 2 cut(s) 389, 402
AoxI GGCC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 183, 197, 250
BamHI GGATCC 1 cut(s) 394
BbrPI CACGTG 1 cut(s) 202
BccI CCATC 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 78, 386
BfuAI ACCTGC 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 346, 396
BmsI GCATC 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 202
BsaI GGTCTC 2 cut(s) 78, 386
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 78, 386
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 2 cut(s) 78, 386
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 346, 396
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 2 cut(s) 389, 402
BspTNI GGTCTC 2 cut(s) 78, 386
BssMI GATC 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 247, 380
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 3 cut(s) 10, 19, 310
BstFNI CGCG 1 cut(s) 224
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 2 cut(s) 78, 386
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 14, 18
BstUI CGCG 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 59
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 10, 19, 310
Cfr13I GGNCC 1 cut(s) 57
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 281
CviAII CATG 4 cut(s) 122, 141, 358, 371
CviJI RGCY 6 cut(s) 59, 211, 267, 308, 345, 355
CviKI_1 RGCY 6 cut(s) 59, 211, 267, 308, 345, 355
CviQI GTAC 1 cut(s) 281
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DriI GACNNNNNGTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 226
Eco31I GGTCTC 2 cut(s) 78, 386
Eco72I CACGTG 1 cut(s) 202
FaeI CATG 4 cut(s) 125, 144, 361, 374
FaiI YATR 8 cut(s) 115, 123, 142, 318, 324, 359, 372, 392
FaqI GGGAC 1 cut(s) 233
FatI CATG 4 cut(s) 121, 140, 357, 370
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 59
HgaI GACGC 1 cut(s) 230
Hin1II CATG 4 cut(s) 125, 144, 361, 374
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 1 cut(s) 188
HphI GGTGA 3 cut(s) 183, 197, 250
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 376
HpyCH4III ACNGT 2 cut(s) 247, 380
HpyCH4IV ACGT 2 cut(s) 178, 201
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 18
HpySE526I ACGT 2 cut(s) 178, 201
Hsp92II CATG 4 cut(s) 125, 144, 361, 374
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 8 cut(s) 22, 64, 132, 153, 193, 253, 269, 298
LweI GCATC 1 cut(s) 93
MaeII ACGT 2 cut(s) 178, 201
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MflI RGATCY 1 cut(s) 394
MluCI AATT 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 3 cut(s) 255, 296, 424
MslI CAYNNNNRTG 2 cut(s) 112, 255
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 14, 18
NdeII GATC 1 cut(s) 394
NlaIII CATG 4 cut(s) 125, 144, 361, 374
NlaIV GGNNCC 2 cut(s) 346, 396
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 188
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 202
PspCI CACGTG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 346, 396
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 112, 255
SaqAI TTAA 3 cut(s) 255, 296, 424
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 57
SetI ASST 6 cut(s) 55, 181, 204, 288, 310, 317
SfaNI GCATC 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 112, 255
Sse9I AATT 1 cut(s) 327
SsiI CCGC 1 cut(s) 224
TaaI ACNGT 2 cut(s) 247, 380
TaiI ACGT 2 cut(s) 181, 204
TaqI TCGA 1 cut(s) 101
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 3 cut(s) 255, 296, 424
Tru9I TTAA 3 cut(s) 255, 296, 424
TspDTI ATGAA 2 cut(s) 239, 359
TspGWI ACGGA 1 cut(s) 85
XapI RAATTY 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.