Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006536.1

Orthogroup ID

OG0003283

Physical Location & Seq

Genomic Coordinates Forward (+)

80336 .. 81992

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006536.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgatggcactgacgagagagagaggagatagagagacggatttcggtggcctcggattgagcttcgacgtcgatgtcgacgacgacgctgaggagagagaggagagagagaacgagctgaggagagagagaagagaagagacgacgcggaggagagaggagacgagaggagagagagagatgagagtggcaggttgtagtttattaattatcttaaggagagagaaagtagatctgtgggttcttctcccggctgaacgccgtgggcgtctctgccgctgcgttccggcccgggagaggatggggatgctgagtagcggagggcctttggggcagaggcgcagtcctgggaagaataatgggtttttggtctcggtttgggaggaccgatctcgatctgttcctctcgaagcggggacgaggatgacggtggttgtggagcagagatgtgacggctctttccggcgatgggttcttacgtctcagatctggagatctgagctggggcggatgagatcgaacagagatcagttcctgactcggttttggttctggttgcggtcttcagctgggtcatggatcagtctgcaacatggccagacggcgcggcggcgtagtgatgcggcggcgcgacgtggtggtgtgtggcagcggtgtggtgacgttggagctgaccggagtcggagatggttgtccgatgtgtttgctctttgtcggggaagttggtttttcggatggtcctctgggttggttttgtcggtgctttctggttgtcaatatgatgacgatttacccctacacgtggtctggcagttttggagcacggtgtccgaacgggtgaatcggttcatctttttattgatggcagggttgtatcgctacaattgggtttggttgttccttggtgttgccagtctggtttggttgtggttttggttgttcctgggtgtagctggtcaggtttggttgttattcaatgttgcctgcaggcgtaaaagttggttaggggttgtgcctttttggctcatggatgtcagttgttttgactgtcccgtaaccgttcgttccacgatggtttcaatgctttgtaatatgaagatggtttcaatgctttgtaatatgtttgttcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

44.09

Weight (kDa)

9.75

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143551 RchiOBHm_Chr2g0158851 RchiOBHm_Chr4g0405391 RchiOBHm_Chr5g0042021 RchiOBHm_Chr7g0239361
rosa_laevigata	RLG00000000606 RLG00000009319 RLG00000011277 RLG00000012176 RLG00000014078 RLG00000016406 RLG00000018993 RLG00000025221
rosa_multiflora	Rmu_sc0000060.1_g000051 Rmu_sc0002267.1_g000016 Rmu_sc0006065.1_g000016 Rmu_sc0006536.1_g000022 Rmu_sc0009140.1_g000005 Rmu_sc0011904.1_g000019 Rmu_sc0011904.1_g000020 Rmu_sc0035138.1_g000001 Rmu_ssc0000215.1_g000052
rosa_roxburghii	Rroxscaffold_1G00020140 Rroxscaffold_1G00047550 Rroxscaffold_3G00264810 Rroxscaffold_7G00190020
rosa_rugosa	Rorug01G0136000.1 Rorug05G0555800 Rorug06G0419400 Rorug07G0345100
rosa_samantha	Rh2BG229200 Rh2CG407900 Rh4AG189500 Rh4AG387700 Rh4BG155500 Rh5BG091100 Rh7AG143300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	3 cut(s)	148, 607, 631
AclWI	GGATC	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	549
AcvI	CACGTG	1 cut(s)	802
AcyI	GRCGYC	2 cut(s)	69, 268
AfiI	CCNNNNNNNGG	3 cut(s)	297, 469, 802
AflII	CTTAAG	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	3 cut(s)	976, 1080, 1107
AjiI	CACGTC	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	346, 942
AluBI	AGCT	6 cut(s)	63, 118, 502, 569, 671, 953
AluI	AGCT	6 cut(s)	63, 118, 502, 569, 671, 953
Alw21I	GWGCWC	1 cut(s)	824
Alw26I	GTCTC	6 cut(s)	29, 134, 155, 275, 376, 486
AlwI	GGATC	1 cut(s)	587
AlwNI	CAGNNNCTG	1 cut(s)	535
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	4 cut(s)	49, 288, 323, 595
ApeKI	GCWGC	2 cut(s)	279, 649
AseI	ATTAAT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	845
AspLEI	GCGC	3 cut(s)	342, 607, 631
AspS9I	GGNCC	4 cut(s)	289, 323, 385, 738
AsuC2I	CCSGG	3 cut(s)	251, 292, 293
AsuHPI	GGTGA	2 cut(s)	671, 850
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	385, 738
BalI	TGGCCA	1 cut(s)	597
BbrPI	CACGTG	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	824
BbvCI	CCTCAGC	2 cut(s)	90, 119
BbvI	GCAGC	2 cut(s)	266, 661
BccI	CCATC	7 cut(s)	295, 462, 681, 729, 856, 1066, 1093
BceAI	ACGGC	3 cut(s)	246, 469, 618
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	2 cut(s)	348, 944
BcnI	CCSGG	3 cut(s)	251, 292, 293
BcoDI	GTCTC	6 cut(s)	29, 134, 155, 275, 376, 486
BfmI	CTRYAG	1 cut(s)	985
BfrI	CTTAAG	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	182
BglI	GCCNNNNNGGC	2 cut(s)	331, 1021
BglII	AGATCT	3 cut(s)	232, 486, 494
BisI	GCNGC	7 cut(s)	277, 280, 608, 611, 624, 627, 650
BlsI	GCNGC	7 cut(s)	278, 281, 609, 612, 625, 628, 651
Bme1390I	CCNGG	5 cut(s)	251, 292, 293, 348, 944
Bme18I	GGWCC	2 cut(s)	385, 738
BmeT110I	CYCGRG	1 cut(s)	291
BmgBI	CACGTC	1 cut(s)	635
BmgT120I	GGNCC	4 cut(s)	289, 323, 385, 738
BmrFI	CCNGG	5 cut(s)	251, 292, 293, 348, 944
BmsI	GCATC	2 cut(s)	297, 610
BoxI	GACNNNNGTC	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	511
Bpu10I	CCTNAGC	2 cut(s)	90, 119
BpuMI	CCSGG	3 cut(s)	251, 292, 293
BsaAI	YACGTR	1 cut(s)	802
BsaBI	GATNNNNATC	1 cut(s)	394
BsaHI	GRCGYC	2 cut(s)	69, 268
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	6 cut(s)	52, 262, 291, 347, 901, 943
BsaWI	WCCGGW	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 469, 802
Bse1I	ACTGG	1 cut(s)	912
Bse8I	GATNNNNATC	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	348, 944
BseDI	CCNNGG	6 cut(s)	52, 262, 291, 347, 901, 943
BseGI	GGATG	6 cut(s)	306, 312, 429, 516, 740, 1036
BseJI	GATNNNNATC	1 cut(s)	394
BseLI	CCNNNNNNNGG	3 cut(s)	297, 469, 802
BseMII	CTCAG	5 cut(s)	81, 110, 302, 489, 497
BseNI	ACTGG	1 cut(s)	912
BseRI	GAGGAG	7 cut(s)	39, 107, 116, 136, 166, 173, 183
BseXI	GCAGC	2 cut(s)	266, 661
BseYI	CCCAGC	2 cut(s)	502, 569
Bsh1236I	CGCG	3 cut(s)	148, 607, 631
BshFI	GGCC	4 cut(s)	51, 290, 325, 597
BsiHKAI	GWGCWC	1 cut(s)	824
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	5 cut(s)	251, 287, 292, 463, 676
BslFI	GGGAC	2 cut(s)	430, 1035
BslI	CCNNNNNNNGG	3 cut(s)	297, 469, 802
BsmAI	GTCTC	6 cut(s)	29, 134, 155, 275, 376, 486
BsmBI	CGTCTC	5 cut(s)	29, 134, 155, 275, 486
BsmFI	GGGAC	2 cut(s)	430, 1035
BsnI	GGCC	4 cut(s)	51, 290, 325, 597
Bso31I	GGTCTC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	824
Bsp143I	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
BspANI	GGCC	4 cut(s)	51, 290, 325, 597
BspCNI	CTCAG	5 cut(s)	82, 111, 303, 490, 496
BspFNI	CGCG	3 cut(s)	148, 607, 631
BspMAI	CTGCAG	1 cut(s)	989
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	912
BssECI	CCNNGG	6 cut(s)	52, 262, 291, 347, 901, 943
BssMI	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
BssNI	GRCGYC	2 cut(s)	69, 268
BssT1I	CCWWGG	1 cut(s)	901
Bst2UI	CCWGG	2 cut(s)	348, 944
Bst4CI	ACNGT	4 cut(s)	430, 826, 1049, 1060
Bst6I	CTCTTC	2 cut(s)	127, 132
BstACI	GRCGYC	2 cut(s)	69, 268
BstAFI	CTTAAG	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	802
BstC8I	GCNNGC	2 cut(s)	985, 989
BstDEI	CTNAG	5 cut(s)	90, 119, 311, 483, 498
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	6 cut(s)	306, 312, 429, 516, 740, 1036
BstFNI	CGCG	3 cut(s)	148, 607, 631
BstHHI	GCGC	3 cut(s)	342, 607, 631
BstKTI	GATC	8 cut(s)	235, 392, 398, 489, 497, 518, 529, 582
BstMAI	GTCTC	6 cut(s)	29, 134, 155, 275, 376, 486
BstMBI	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 1021
BstNI	CCWGG	2 cut(s)	348, 944
BstPAI	GACNNNNGTC	1 cut(s)	678
BstSCI	CCNGG	5 cut(s)	249, 290, 291, 346, 942
BstSFI	CTRYAG	1 cut(s)	985
BstUI	CGCG	3 cut(s)	148, 607, 631
BstV1I	GCAGC	2 cut(s)	266, 661
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	3 cut(s)	232, 486, 494
BstYI	RGATCY	3 cut(s)	232, 486, 494
BsuRI	GGCC	4 cut(s)	51, 290, 325, 597
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	635
BtsCI	GGATG	6 cut(s)	306, 312, 429, 516, 740, 1036
BtsIMutI	CAGTG	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	985, 989
CaiI	CAGNNNCTG	1 cut(s)	535
CfoI	GCGC	3 cut(s)	342, 607, 631
Cfr13I	GGNCC	4 cut(s)	289, 323, 385, 738
Cfr9I	CCCGGG	1 cut(s)	291
CseI	GACGC	3 cut(s)	95, 154, 257
CviAII	CATG	3 cut(s)	576, 593, 1027
DdeI	CTNAG	5 cut(s)	90, 119, 311, 483, 498
DpnI	GATC	8 cut(s)	234, 391, 397, 488, 496, 517, 528, 581
DpnII	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	127, 132
EarI	CTCTTC	2 cut(s)	127, 132
EciI	GGCGGA	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	901
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	385, 738
Eco57I	CTGAAG	1 cut(s)	549
Eco72I	CACGTG	1 cut(s)	802
Eco88I	CYCGRG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	346, 942
EcoT14I	CCWWGG	1 cut(s)	901
ErhI	CCWWGG	1 cut(s)	901
Esp3I	CGTCTC	5 cut(s)	29, 134, 155, 275, 486
FaeI	CATG	3 cut(s)	579, 596, 1030
FaiI	YATR	6 cut(s)	577, 594, 780, 1028, 1094, 1121
FaqI	GGGAC	2 cut(s)	430, 1035
FatI	CATG	3 cut(s)	575, 592, 1026
FauI	CCCGC	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	7 cut(s)	277, 280, 608, 611, 624, 627, 650
FokI	GGATG	6 cut(s)	313, 319, 436, 523, 747, 1043
Fsp4HI	GCNGC	7 cut(s)	277, 280, 608, 611, 624, 627, 650
GlaI	GCGC	3 cut(s)	341, 606, 630
GluI	GCNGC	7 cut(s)	277, 280, 608, 611, 624, 627, 650
GsaI	CCCAGC	2 cut(s)	506, 573
GsuI	CTGGAG	1 cut(s)	511
HaeIII	GGCC	4 cut(s)	51, 290, 325, 597
HapII	CCGG	5 cut(s)	251, 287, 292, 463, 676
HgaI	GACGC	3 cut(s)	95, 154, 257
HhaI	GCGC	3 cut(s)	342, 607, 631
Hin1I	GRCGYC	2 cut(s)	69, 268
Hin1II	CATG	3 cut(s)	579, 596, 1030
Hin6I	GCGC	3 cut(s)	340, 605, 629
HinP1I	GCGC	3 cut(s)	340, 605, 629
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	538, 679, 841
HpaII	CCGG	5 cut(s)	251, 287, 292, 463, 676
HphI	GGTGA	2 cut(s)	671, 850
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	7 cut(s)	56, 486, 499, 684, 697, 734, 832
Hpy188III	TCNNGA	4 cut(s)	393, 407, 490, 535
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	7 cut(s)	71, 74, 83, 86, 89, 148, 636
HpyCH4III	ACNGT	4 cut(s)	430, 826, 1049, 1060
HpyCH4IV	ACGT	5 cut(s)	69, 479, 634, 663, 801
HpyCH4V	TGCA	2 cut(s)	589, 987
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 1021
HpyF3I	CTNAG	5 cut(s)	90, 119, 311, 483, 498
HpySE526I	ACGT	5 cut(s)	69, 479, 634, 663, 801
Hsp92I	GRCGYC	2 cut(s)	69, 268
Hsp92II	CATG	3 cut(s)	579, 596, 1030
HspAI	GCGC	3 cut(s)	340, 605, 629
Kzo9I	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
LmnI	GCTCC	3 cut(s)	439, 668, 819
Lsp1109I	GCAGC	2 cut(s)	266, 661
LweI	GCATC	2 cut(s)	297, 610
MaeII	ACGT	5 cut(s)	69, 479, 634, 663, 801
MaeIII	GTNAC	3 cut(s)	449, 659, 1054
MalI	GATC	8 cut(s)	234, 391, 397, 488, 496, 517, 528, 581
MboI	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
MboII	GAAGA	6 cut(s)	144, 149, 236, 364, 555, 1108
MfeI	CAATTG	1 cut(s)	883
MflI	RGATCY	3 cut(s)	232, 486, 494
MhlI	GDGCHC	1 cut(s)	824
MlsI	TGGCCA	1 cut(s)	597
MluCI	AATT	2 cut(s)	207, 883
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	2 cut(s)	532, 688
MmeI	TCCRAC	2 cut(s)	646, 662
Mox20I	TGGCCA	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	3 cut(s)	206, 215, 1132
Msp20I	TGGCCA	1 cut(s)	597
MspA1I	CMGCKG	3 cut(s)	279, 569, 652
MspCI	CTTAAG	1 cut(s)	214
MspI	CCGG	5 cut(s)	251, 287, 292, 463, 676
MspR9I	CCNGG	5 cut(s)	251, 292, 293, 348, 944
MunI	CAATTG	1 cut(s)	883
MvaI	CCWGG	2 cut(s)	348, 944
MvnI	CGCG	3 cut(s)	148, 607, 631
MwoI	GCNNNNNNNGC	2 cut(s)	331, 1021
NciI	CCSGG	3 cut(s)	251, 292, 293
NdeII	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
NlaIII	CATG	3 cut(s)	579, 596, 1030
NmuCI	GTSAC	2 cut(s)	449, 659
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 78, 265
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	1 cut(s)	841
PkrI	GCNGC	7 cut(s)	278, 281, 609, 612, 625, 628, 651
PleI	GAGTC	2 cut(s)	532, 687
PmaCI	CACGTG	1 cut(s)	802
PmlI	CACGTG	1 cut(s)	802
PpsI	GAGTC	2 cut(s)	532, 687
Ppu21I	YACGTR	1 cut(s)	802
PshAI	GACNNNNGTC	1 cut(s)	678
PshBI	ATTAAT	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	346, 942
PspCI	CACGTG	1 cut(s)	802
PspFI	CCCAGC	2 cut(s)	502, 569
PspGI	CCWGG	2 cut(s)	346, 942
PspPI	GGNCC	4 cut(s)	289, 323, 385, 738
PstI	CTGCAG	1 cut(s)	989
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	3 cut(s)	232, 486, 494
PvuII	CAGCTG	1 cut(s)	569
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	206, 215, 1132
SatI	GCNGC	7 cut(s)	277, 280, 608, 611, 624, 627, 650
Sau3AI	GATC	8 cut(s)	232, 389, 395, 486, 494, 515, 526, 579
Sau96I	GGNCC	4 cut(s)	289, 323, 385, 738
SbfI	CCTGCAGG	1 cut(s)	989
SchI	GAGTC	2 cut(s)	532, 688
ScrFI	CCNGG	5 cut(s)	251, 292, 293, 348, 944
SdaI	CCTGCAGG	1 cut(s)	989
SduI	GDGCHC	1 cut(s)	824
SfaNI	GCATC	2 cut(s)	297, 610
SfcI	CTRYAG	1 cut(s)	985
SinI	GGWCC	2 cut(s)	385, 738
SmaI	CCCGGG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse8387I	CCTGCAGG	1 cut(s)	989
Sse9I	AATT	2 cut(s)	207, 883
StyD4I	CCNGG	5 cut(s)	249, 290, 291, 346, 942
StyI	CCWWGG	1 cut(s)	901
TaaI	ACNGT	4 cut(s)	430, 826, 1049, 1060
TaiI	ACGT	5 cut(s)	72, 482, 637, 666, 804
TaqI	TCGA	6 cut(s)	66, 72, 78, 394, 408, 518
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	207, 883
TauI	GCSGC	5 cut(s)	279, 610, 613, 626, 629
TfiI	GAWTC	1 cut(s)	841
Tru1I	TTAA	3 cut(s)	206, 215, 1132
Tru9I	TTAA	3 cut(s)	206, 215, 1132
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	2 cut(s)	449, 659
TseI	GCWGC	2 cut(s)	279, 649
Tsp45I	GTSAC	2 cut(s)	449, 659
TspDTI	ATGAA	3 cut(s)	838, 1109, 1118
TspGWI	ACGGA	1 cut(s)	53
TspMI	CCCGGG	1 cut(s)	291
TspRI	CASTG	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	385, 738
VspI	ATTAAT	1 cut(s)	206
XmaI	CCCGGG	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	845
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.