Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Reverse (-)

55835134 .. 55837035

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0419400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATTCCAAATGCATGTACCAGACCCAGTGGGTTTATCTCTGTAAATTCGAGAGTATGTAAGCCATCGATATGCAGTAGCCCTGTGTTGTCATGCATTCCTCGTTTTCAAAGTAAGAGTGCTTTTCAATGTATCATTTCATGGAGTTCCCCTCAGAAGGCTATGCCGCTTCTGCACCCCTGTGCTGCGTCGAGCCCATTTTTCAGTGGGGATCAAGGCAGCCTTTTACGCACAATCCCCACACTGCAAAGGCGAGGCAGATCCAGTATGGCCCCTCAAGCATCTAAGGATGTCCCATACAGTTTTCGGTTCCCTCCCATGATGAAGAAGCCAAAGTGGTGGTGGAGGACATTGGCATGTCTCCCCTACTTAATGCCTCTACACGAGACATGGATGTATGCAGAGACAGCCTATCACCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCACATACCCATTTCTTGGCGCCATTGGGAGTTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCATATCTTGGAATTGTGAGGAGAAAGGAGTGGCCTCACTTCTTCAGATTTCATGTGGTGATGGGCATGCTACTGGAGATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTTGCTATTTACTGGGGTAAATTCGGGATGCACTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGTGTTGGAGTGCATACGCTGTGCTCTTGCTGGTATGTACGCTGATATCCCCTTTGTTTGTGATGCTGCATATATTCAAATTCCCTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

265

Amino Acids

30.47

Weight (kDa)

9.2

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	86 - 258	1.6e-72	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	426, 595
Acc36I	ACCTGC	2 cut(s)	426, 595
AccB1I	GGYRCC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	219, 255
AcsI	RAATTY	3 cut(s)	46, 656, 783
AcuI	CTGAAG	1 cut(s)	544
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	19, 743
AfiI	CCNNNNNNNGG	3 cut(s)	157, 430, 464
AgsI	TTSAA	3 cut(s)	110, 128, 782
AjnI	CCWGG	1 cut(s)	429
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	3 cut(s)	365, 380, 398
AlwI	GGATC	2 cut(s)	219, 255
AoxI	GGCC	2 cut(s)	270, 548
ApeKI	GCWGC	3 cut(s)	185, 219, 770
ApoI	RAATTY	3 cut(s)	46, 656, 783
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	407, 586, 619
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	3 cut(s)	172, 231, 757
BccI	CCATC	3 cut(s)	73, 493, 571
BceAI	ACGGC	2 cut(s)	609, 665
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	3 cut(s)	365, 380, 398
BfoI	RGCGCY	1 cut(s)	471
BfuAI	ACCTGC	2 cut(s)	426, 595
BisI	GCNGC	4 cut(s)	167, 186, 220, 771
BlsI	GCNGC	4 cut(s)	168, 187, 221, 772
Bme1390I	CCNGG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	273, 311, 469
BmrFI	CCNGG	1 cut(s)	431
BmrI	ACTGGG	2 cut(s)	21, 658
BmsI	GCATC	4 cut(s)	290, 621, 654, 757
BmuI	ACTGGG	2 cut(s)	21, 658
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 430, 464
Bse1I	ACTGG	4 cut(s)	27, 264, 594, 653
BseBI	CCWGG	1 cut(s)	431
BseCI	ATCGAT	1 cut(s)	68
BseGI	GGATG	4 cut(s)	295, 399, 636, 669
BseLI	CCNNNNNNNGG	3 cut(s)	157, 430, 464
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	4 cut(s)	27, 264, 594, 653
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	3 cut(s)	172, 231, 757
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	2 cut(s)	158, 404
BshFI	GGCC	2 cut(s)	272, 550
BshNI	GGYRCC	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	730
BslFI	GGGAC	2 cut(s)	278, 628
BslI	CCNNNNNNNGG	3 cut(s)	157, 430, 464
BsmAI	GTCTC	3 cut(s)	365, 380, 398
BsmFI	GGGAC	2 cut(s)	278, 628
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	272, 550
Bsp1286I	GDGCHC	2 cut(s)	197, 730
Bsp143I	GATC	2 cut(s)	211, 260
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	272, 550
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	273, 311, 469
BspMI	ACCTGC	2 cut(s)	426, 595
BspPI	GGATC	2 cut(s)	219, 255
BspT107I	GGYRCC	1 cut(s)	467
BsrI	ACTGG	4 cut(s)	27, 264, 594, 653
BssMI	GATC	2 cut(s)	211, 260
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	3 cut(s)	302, 619, 706
BstACI	GRCGYC	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	2 cut(s)	153, 285
BstF5I	GGATG	4 cut(s)	295, 399, 636, 669
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	2 cut(s)	214, 263
BstMAI	GTCTC	3 cut(s)	365, 380, 398
BstMBI	GATC	2 cut(s)	211, 260
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 228, 278, 407
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	3 cut(s)	18, 360, 586
BstSCI	CCNGG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	172, 231, 757
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	272, 550
BsuTUI	ATCGAT	1 cut(s)	68
BtsCI	GGATG	4 cut(s)	295, 399, 636, 669
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	4 cut(s)	34, 211, 242, 711
BveI	ACCTGC	2 cut(s)	426, 595
Cac8I	GCNNGC	1 cut(s)	584
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	68
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	18, 742
CviAII	CATG	8 cut(s)	15, 93, 141, 319, 357, 390, 569, 583
CviQI	GTAC	2 cut(s)	18, 742
DdeI	CTNAG	2 cut(s)	153, 285
DinI	GGCGCC	1 cut(s)	469
DpnI	GATC	2 cut(s)	213, 262
DpnII	GATC	2 cut(s)	211, 260
Eco24I	GRGCYC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	751
EcoT22I	ATGCAT	2 cut(s)	16, 98
EcoT38I	GRGCYC	1 cut(s)	197
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
FaeI	CATG	8 cut(s)	18, 96, 144, 322, 360, 393, 572, 586
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	2 cut(s)	278, 628
FatI	CATG	8 cut(s)	14, 92, 140, 318, 356, 389, 568, 582
Fnu4HI	GCNGC	4 cut(s)	167, 186, 220, 771
FokI	GGATG	4 cut(s)	302, 406, 643, 676
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	167, 186, 220, 771
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	4 cut(s)	167, 186, 220, 771
GsaI	CCCAGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	611
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	272, 550
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	8 cut(s)	18, 96, 144, 322, 360, 393, 572, 586
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	3 cut(s)	407, 586, 619
Hpy188I	TCNGA	2 cut(s)	156, 563
Hpy188III	TCNNGA	4 cut(s)	51, 496, 661, 673
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	3 cut(s)	302, 619, 706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 228, 278, 407
HpyF3I	CTNAG	2 cut(s)	153, 285
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	8 cut(s)	18, 96, 144, 322, 360, 393, 572, 586
HspAI	GCGC	1 cut(s)	468
KasI	GGCGCC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	211, 260
Lsp1109I	GCAGC	3 cut(s)	172, 231, 757
LweI	GCATC	4 cut(s)	290, 621, 654, 757
MalI	GATC	2 cut(s)	213, 262
MboI	GATC	2 cut(s)	211, 260
MboII	GAAGA	4 cut(s)	337, 439, 446, 550
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	197, 730
MluCI	AATT	4 cut(s)	46, 528, 656, 783
Mly113I	GGCGCC	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	608, 690
MnlI	CCTC	9 cut(s)	111, 162, 248, 285, 324, 339, 387, 528, 561
Mph1103I	ATGCAT	2 cut(s)	16, 98
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	3 cut(s)	70, 180, 355
MspA1I	CMGCKG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	172, 228, 278, 407
NarI	GGCGCC	1 cut(s)	468
NdeII	GATC	2 cut(s)	211, 260
NlaIII	CATG	8 cut(s)	18, 96, 144, 322, 360, 393, 572, 586
NlaIV	GGNNCC	3 cut(s)	273, 311, 469
NsiI	ATGCAT	2 cut(s)	16, 98
NspI	RCATGY	3 cut(s)	18, 360, 586
OliI	CACNNNNGTG	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	586
PaqCI	CACCTGC	2 cut(s)	426, 595
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	168, 187, 221, 772
PluTI	GGCGCC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	273, 311, 469
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	489
RsaI	GTAC	2 cut(s)	19, 743
RsaNI	GTAC	2 cut(s)	18, 742
RseI	CAYNNNNRTG	3 cut(s)	70, 180, 355
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	4 cut(s)	167, 186, 220, 771
Sau3AI	GATC	2 cut(s)	211, 260
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	197, 730
SetI	ASST	4 cut(s)	420, 491, 609, 699
SfaNI	GCATC	4 cut(s)	290, 621, 654, 757
SfoI	GGCGCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	3 cut(s)	70, 180, 355
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	4 cut(s)	46, 528, 656, 783
SsiI	CCGC	1 cut(s)	167
SspDI	GGCGCC	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	302, 619, 706
TaqI	TCGA	3 cut(s)	50, 68, 191
TasI	AATT	4 cut(s)	46, 528, 656, 783
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	4 cut(s)	34, 211, 249, 711
TseI	GCWGC	3 cut(s)	185, 219, 770
TspDTI	ATGAA	3 cut(s)	129, 338, 557
TspRI	CASTG	4 cut(s)	34, 211, 249, 711
Van91I	CCANNNNNTGG	1 cut(s)	464
XapI	RAATTY	3 cut(s)	46, 656, 783
XceI	RCATGY	3 cut(s)	18, 360, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
Zsp2I	ATGCAT	2 cut(s)	16, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.