Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Reverse (-)

31378239 .. 31392452

Gene Structure 14214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1233900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2928 bp

ATGTCTCCTCCCTCCGATGACGACCAAGACCAGTTTTCCGTCGACGAAGAAGAAGAAGACGATGACCTTTTCGAAGCGGATATGGAAGCCCTACGGCGGGCCTGTATGCTCACCGGCACGAGCCCCGACGACCTCAAAAACGACGGCGGCGACGGCAACGACGACGAACGCCAAGCTTCTGCCGACTCAGAGTCCGACTCCGACGCCGACGCCGACGACGATGACCTCGAGTTGCTCCGCCAAATAAGGAGCCGGTTCTCGAATTCTTCCGACGCGTGCGAGCCTCTGTCTCTGAAGCCCTTGTGTACTTTGCCACCTGATGCCTCCGGCGACGAGGAGGACGATTACCAGACGCTCCTCGCCATTAGGAAACGTTTCTCAGCCTACGGGAACGATACTCTAGAAAATGATACGAAACAGGTTGGTTCCTGTTGCAAATCGGTGAAGGAAACTTGTTATGAAATTTCTGCTATTAGAAATGATGCTCTTGAAAGGTTTCCAGATCCTGAAGATGCTGACCTGGCCACCAAACCACTGAGTGACAATGCAGAGGGACAGTCTTCTGCGTTGATTGTGTGGAATCAGTCAGATTCTTGCAGCACGTCCATGTTGCCACGCAAAGACTCGAGCTTCCCAAAGGCTGCTCAGGTGTTTATGGATGCCATTAAGAAGAATAGGGCTAGTCAGAAATTTATCCGGAATAAGTTGATCCAAATTGAAGCAAAAATTGAGGAGAACAGAAAATTGAAGGAACGTGTTAAAATCCTTAAAGACTTTCAGGTTTCTTGCAAAAGACGAACTTGGGAATCACTGTCCCAAAAGAAGGATCCTCGTGTCCAGTTAATTTTACCGAAAGGGCCAAGGGATTCCAGGGATTCAAAGGTTCATTACAAAAAGATCTCAGCTTTGTTATATGGCCCAGAAGAGAACTCTCATGTCGCTAATTACAGAATGACGATGAAAAAATATCTGGATTCATTATGTCGAAAAAAATGGTCAAAGGTAGAAAAAGAAGCCCTTGAAAAGGGTATAAAGCAACAATTTCAAGAAATGGTGCTCCAATCTTCTGTTGATGAATCAAGTTTTTCCGAGAGACCTTGTGGAGAATCTAATCATATTGATGACATTTTGGCTTCAATCAAAGGTCTTGAAATTACCCCAGAAATTATCAGAGAGTTCCTGCCTAAGGTTAAATGGGAACAGTTGGCTTCCATGTATCTCCCGGGTCGTTCTGGTGCAGAATGTGAAACAAGGTGGTTGAACTGGGAGGATCCTTTAATCAATCGTAAATCATGGACTGCAAAAGAGGACAAGAATCTTCTGTATTTTGTCCAGGAGAAGGGGATCAATAATTGGTTTGATATTGCAGTATCATTGGGGACAAACAGGACTCCGTTTCAGTGCTTGGCACGGTATCAAAGGAGCCTAAATGCTTCCATACTTAAACGGGAGTGGACCAAGGATGAGGATGCAAGACTTCGCTCTGCTGTAGAAACTTTGGGTGAGGGTAATTGGCAGGCTATAGCTTCTGCATTGGGAGGACGAGCTGGCACCCAGTGCTCTAATAGATGGAAGAAATCTCTTCACCCAACCAAGAAAAGAGAAGGTAGGTGGACTCCGGAGGAAGACAAATGTCTGAAAGTAGCTCAAATGCTTTTTGGACCAAAAAATTGGAATAAAACAGCTCAATTTGTGCCAGGTCGAACTCAATCACAGTGTAGAGATAGATATGTCAACTCTTTAGAACCATCTTTGAACTATGGTGAATGGGCTGAAGAAGAGGACTCAAGATTGAGAGCAGCAATCGAGGAACATGGATATTGCTGGTCCAAAGTTGCTGCATGTGTGCCTCGACGTACTGATAATATGTGCTGGAGGAGATGTAAGGTTTTATATCCAGAAGAAGTGCTCTTGCTCAAAGAACAGAAGAAAATCAAGAAGGTTGCTCTTATGTGCAACTTTGTTGATCGGGAGGAAGAGCGTCCAGCCCTTGGCCCCAATGATTTTCTTCCACCGATTGATACTTCAACCAAAACTCTAACTTATCCTAAGAAGCAGAATGGAAAATTAAGCAAAGTTCCGAACAAGACTAGGTCCGGGAGGAATAAAAACAATAGTGAAAGTTGTTCAGATGCTCATGGGATAGATAATTCTGATCAAGTTGAGACATCCAACGGACATGATGCGCCAAATAAGAAGAATAATGTTCGTAAACAGCGGCGTAGAAGGCGCAAAAGTACTGAGCCAACAGGAGAGGGTCAGGTTATTGTACCTGTTCCTGATGAGCACGTTACACACAAAGAAGAACAGAGGGAAACGTCTTGTTCTGATCAGATTGTCGGAACATCAGATGGAGATGATACTACACTTGCTGTCTTTCAACGCAATAAATCAAAGAAGAGAAATCTTGGGCCTCCCTCAAATGATACGAGAAAGAAGAGAAAGCTTGTAGTTTCTGATTGTTCTGTTCAAGATTCCCCCACCAACAATATCCAGAAGGGAGCTGGATCACATCCTGAAGCAGCCATCATGGTTTGCGACAGCGAGCAAGGTGGACTAAAGTTAGACAGCGAGCGGAATGTTACCTTCCAAGAACCTGTGATCACAGTGGCGGGCGTTAGTCCAAAAAGTGATCATGATGCTGATGATGTTCTTGCTTCCTTGGGGAAGAAGAAATCAAAGAAGAAGCGCCCTCAAACTTCCAAAAGCCGTCCTCAAACTTCCAAAAGCCGTCCTTCAAGTGCGACAATGAAATCAGAATCGCTTCCAAAAGGAGTTGGTCTAGGAAAAGGAGAGGGGCTTGATCACTGTGAACCTGTGAGCGAAACAGGGAGCAATGGTGCCGAAGGTGATCATGAGGATGGTGATATGACACTAGCTTGCTTTCTACGAAACAAATCAAAGAAGAGGCGGCGTCAATGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

976

Amino Acids

109.87

Weight (kDa)

7.63

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	429 - 474	2.4e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	432 - 493	1.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	482 - 526	1.4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	485 - 534	4.3e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	536 - 579	2.1e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	538 - 598	4.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	588 - 627	4.5e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1550, 2840
AccB7I	CCANNNNNTGG	1 cut(s)	1991
AccBSI	CCGCTC	1 cut(s)	2575
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	2 cut(s)	696, 1618
AciI	CCGC	9 cut(s)	77, 97, 147, 238, 2218, 2575, 2612, 2911, 2922
AclI	AACGTT	1 cut(s)	373
AclWI	GGATC	8 cut(s)	497, 703, 821, 834, 1265, 1278, 1352, 2515
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	3 cut(s)	262, 462, 689
AcuI	CTGAAG	4 cut(s)	314, 528, 1794, 2538
AcyI	GRCGYC	3 cut(s)	204, 210, 2914
AdeI	CACNNNGTG	2 cut(s)	539, 1557
AfaI	GTAC	4 cut(s)	307, 1858, 2239, 2271
AfiI	CCNNNNNNNGG	7 cut(s)	96, 97, 823, 1024, 1186, 1339, 1991
AflIII	ACRYGT	2 cut(s)	273, 754
AhdI	GACNNNNNGTC	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	603
AjnI	CCWGG	4 cut(s)	519, 869, 1332, 1696
Alw21I	GWGCWC	4 cut(s)	1059, 1562, 1911, 2289
Alw26I	GTCTC	4 cut(s)	9, 294, 1087, 2159
AlwI	GGATC	8 cut(s)	497, 703, 821, 834, 1265, 1278, 1352, 2515
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	3 cut(s)	227, 625, 1222
Aor13HI	TCCGGA	2 cut(s)	696, 1618
AoxI	GGCC	6 cut(s)	99, 522, 857, 916, 1993, 2411
ApeKI	GCWGC	5 cut(s)	597, 641, 1799, 1838, 2522
ApoI	RAATTY	3 cut(s)	262, 462, 689
Asp700I	GAANNNNTTC	3 cut(s)	374, 495, 2763
AspLEI	GCGC	3 cut(s)	2188, 2232, 2691
AspS9I	GGNCC	9 cut(s)	99, 857, 917, 1455, 1661, 1827, 1994, 2094, 2411
AsuC2I	CCSGG	3 cut(s)	1223, 1224, 2098
AsuHPI	GGTGA	7 cut(s)	103, 454, 1514, 1577, 1775, 2861, 2876
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	3 cut(s)	227, 625, 1222
AvaII	GGWCC	4 cut(s)	1455, 1661, 1827, 2094
AxyI	CCTNAGG	1 cut(s)	1185
BalI	TGGCCA	1 cut(s)	524
BamHI	GGATCC	2 cut(s)	826, 1270
BanI	GGYRCC	2 cut(s)	1550, 2840
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	2 cut(s)	118, 831
BbsI	GAAGAC	3 cut(s)	63, 552, 1632
Bbv12I	GWGCWC	4 cut(s)	1059, 1562, 1911, 2289
BbvI	GCAGC	5 cut(s)	609, 628, 1811, 1825, 2534
BccI	CCATC	5 cut(s)	1563, 1756, 2345, 2534, 2855
BceAI	ACGGC	5 cut(s)	110, 160, 169, 2694, 2715
BciT130I	CCWGG	4 cut(s)	521, 871, 1334, 1698
BclI	TGATCA	6 cut(s)	2155, 2329, 2601, 2632, 2803, 2851
BcnI	CCSGG	3 cut(s)	1223, 1224, 2098
BcoDI	GTCTC	4 cut(s)	9, 294, 1087, 2159
BfaI	CTAG	5 cut(s)	401, 681, 2091, 2783, 2876
BfmI	CTRYAG	2 cut(s)	1488, 1521
BfoI	RGCGCY	1 cut(s)	2692
BglII	AGATCT	1 cut(s)	897
BisI	GCNGC	8 cut(s)	148, 598, 642, 1800, 1839, 2219, 2523, 2912
BlsI	GCNGC	8 cut(s)	149, 599, 643, 1801, 1840, 2220, 2524, 2913
BmcAI	AGTACT	1 cut(s)	2239
Bme1390I	CCNGG	7 cut(s)	521, 871, 1223, 1224, 1334, 1698, 2098
Bme18I	GGWCC	4 cut(s)	1455, 1661, 1827, 2094
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmeT110I	CYCGRG	3 cut(s)	227, 625, 1222
BmgBI	CACGTC	1 cut(s)	603
BmgT120I	GGNCC	9 cut(s)	99, 857, 917, 1455, 1661, 1827, 1994, 2094, 2411
BmiI	GGNNCC	8 cut(s)	251, 427, 828, 1272, 1424, 1552, 1996, 2842
BmrFI	CCNGG	7 cut(s)	521, 871, 1223, 1224, 1334, 1698, 2098
BmrI	ACTGGG	2 cut(s)	1273, 1549
BmsI	GCATC	8 cut(s)	310, 472, 502, 649, 1459, 2122, 2173, 2629
BmuI	ACTGGG	2 cut(s)	1273, 1549
BoxI	GACNNNNGTC	1 cut(s)	1632
BpiI	GAAGAC	3 cut(s)	63, 552, 1632
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	1 cut(s)	1894
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	1771
BpuMI	CCSGG	3 cut(s)	1223, 1224, 2098
BsaHI	GRCGYC	3 cut(s)	204, 210, 2914
BsaI	GGTCTC	1 cut(s)	1087
BsaJI	CCNNGG	6 cut(s)	860, 870, 1222, 1458, 1990, 2661
BsaWI	WCCGGW	2 cut(s)	696, 1618
BsaXI	ACNNNNNCTCC	4 cut(s)	1867, 1897, 2824, 2854
Bsc4I	CCNNNNNNNGG	7 cut(s)	96, 97, 823, 1024, 1186, 1339, 1991
Bse118I	RCCGGY	2 cut(s)	113, 252
Bse1I	ACTGG	4 cut(s)	31, 838, 1268, 1555
Bse21I	CCTNAGG	1 cut(s)	1185
Bse3DI	GCAATG	1 cut(s)	2842
BseAI	TCCGGA	2 cut(s)	696, 1618
BseBI	CCWGG	4 cut(s)	521, 871, 1334, 1698
BseDI	CCNNGG	6 cut(s)	860, 870, 1222, 1458, 1990, 2661
BseGI	GGATG	6 cut(s)	664, 1468, 1474, 2168, 2512, 2866
BseLI	CCNNNNNNNGG	7 cut(s)	96, 97, 823, 1024, 1186, 1339, 1991
BseMI	GCAATG	1 cut(s)	2842
BseMII	CTCAG	6 cut(s)	201, 393, 527, 659, 915, 2232
BseNI	ACTGG	4 cut(s)	31, 838, 1268, 1555
BseRI	GAGGAG	4 cut(s)	347, 350, 746, 1891
BseXI	GCAGC	5 cut(s)	609, 628, 1811, 1825, 2534
BsgI	GTGCAG	1 cut(s)	1257
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	6 cut(s)	101, 524, 859, 918, 1995, 2413
BshNI	GGYRCC	2 cut(s)	1550, 2840
BsiHKAI	GWGCWC	4 cut(s)	1059, 1562, 1911, 2289
BsiHKCI	CYCGRG	3 cut(s)	227, 625, 1222
BsiSI	CCGG	7 cut(s)	114, 253, 327, 697, 1223, 1619, 2097
BslFI	GGGAC	3 cut(s)	567, 799, 1393
BslI	CCNNNNNNNGG	7 cut(s)	96, 97, 823, 1024, 1186, 1339, 1991
BsmAI	GTCTC	4 cut(s)	9, 294, 1087, 2159
BsmFI	GGGAC	3 cut(s)	567, 799, 1393
BsnI	GGCC	6 cut(s)	101, 524, 859, 918, 1995, 2413
Bso31I	GGTCTC	1 cut(s)	1087
BsoBI	CYCGRG	3 cut(s)	227, 625, 1222
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	5 cut(s)	125, 1059, 1562, 1911, 2289
Bsp13I	TCCGGA	2 cut(s)	696, 1618
BspACI	CCGC	9 cut(s)	77, 97, 147, 238, 2218, 2575, 2612, 2911, 2922
BspANI	GGCC	6 cut(s)	101, 524, 859, 918, 1995, 2413
BspCNI	CTCAG	6 cut(s)	200, 392, 528, 658, 914, 2233
BspEI	TCCGGA	2 cut(s)	696, 1618
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	2 cut(s)	2635, 2854
BspLI	GGNNCC	8 cut(s)	251, 427, 828, 1272, 1424, 1552, 1996, 2842
BspPI	GGATC	8 cut(s)	497, 703, 821, 834, 1265, 1278, 1352, 2515
BspQI	GCTCTTC	1 cut(s)	1971
BspT104I	TTCGAA	1 cut(s)	72
BspT107I	GGYRCC	2 cut(s)	1550, 2840
BspTNI	GGTCTC	1 cut(s)	1087
BsrBI	CCGCTC	1 cut(s)	2575
BsrDI	GCAATG	1 cut(s)	2842
BsrFI	RCCGGY	2 cut(s)	113, 252
BsrI	ACTGG	4 cut(s)	31, 838, 1268, 1555
BssAI	RCCGGY	2 cut(s)	113, 252
BssECI	CCNNGG	6 cut(s)	860, 870, 1222, 1458, 1990, 2661
BssNI	GRCGYC	3 cut(s)	204, 210, 2914
BssSI	CACGAG	2 cut(s)	118, 831
BssT1I	CCWWGG	4 cut(s)	860, 1458, 1990, 2661
Bst2BI	CACGAG	2 cut(s)	118, 831
Bst2UI	CCWGG	4 cut(s)	521, 871, 1334, 1698
Bst4CI	ACNGT	7 cut(s)	558, 813, 1203, 1413, 1716, 2608, 2810
Bst6I	CTCTTC	7 cut(s)	918, 1587, 1773, 1971, 2393, 2432, 2900
BstACI	GRCGYC	3 cut(s)	204, 210, 2914
BstAPI	GCANNNNNTGC	1 cut(s)	1557
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	9 cut(s)	99, 277, 281, 1518, 1549, 2546, 2573, 2614, 2881
BstDEI	CTNAG	8 cut(s)	187, 379, 536, 645, 901, 1185, 2049, 2241
BstENI	CCTNNNNNAGG	2 cut(s)	1022, 1184
BstF5I	GGATG	6 cut(s)	664, 1468, 1474, 2168, 2512, 2866
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	2692
BstHHI	GCGC	3 cut(s)	2188, 2232, 2691
BstMAI	GTCTC	4 cut(s)	9, 294, 1087, 2159
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 521, 1557, 2227
BstNI	CCWGG	4 cut(s)	521, 871, 1334, 1698
BstNSI	RCATGY	1 cut(s)	1845
BstPAI	GACNNNNGTC	1 cut(s)	1632
BstSCI	CCNGG	7 cut(s)	519, 869, 1221, 1222, 1332, 1696, 2096
BstSFI	CTRYAG	2 cut(s)	1488, 1521
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	5 cut(s)	609, 628, 1811, 1825, 2534
BstV2I	GAAGAC	3 cut(s)	63, 552, 1632
BstX2I	RGATCY	4 cut(s)	502, 826, 897, 1270
BstXI	CCANNNNNNTGG	1 cut(s)	1671
BstYI	RGATCY	4 cut(s)	502, 826, 897, 1270
Bsu36I	CCTNAGG	1 cut(s)	1185
BsuRI	GGCC	6 cut(s)	101, 524, 859, 918, 1995, 2413
BtrI	CACGTC	1 cut(s)	603
BtsCI	GGATG	6 cut(s)	664, 1468, 1474, 2168, 2512, 2866
BtsIMutI	CAGTG	7 cut(s)	533, 809, 1406, 1562, 1721, 2613, 2806
Cac8I	GCNNGC	9 cut(s)	99, 277, 281, 1518, 1549, 2546, 2573, 2614, 2881
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	2 cut(s)	2635, 2854
CfoI	GCGC	3 cut(s)	2188, 2232, 2691
Cfr10I	RCCGGY	2 cut(s)	113, 252
Cfr13I	GGNCC	9 cut(s)	99, 857, 917, 1455, 1661, 1827, 1994, 2094, 2411
Cfr9I	CCCGGG	1 cut(s)	1222
CseI	GACGC	6 cut(s)	212, 218, 281, 361, 1970, 2903
Csp6I	GTAC	4 cut(s)	306, 1857, 2238, 2270
CviQI	GTAC	4 cut(s)	306, 1857, 2238, 2270
DdeI	CTNAG	8 cut(s)	187, 379, 536, 645, 901, 1185, 2049, 2241
DraIII	CACNNNGTG	2 cut(s)	539, 1557
DriI	GACNNNNNGTC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	7 cut(s)	918, 1587, 1773, 1971, 2393, 2432, 2900
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	7 cut(s)	918, 1587, 1773, 1971, 2393, 2432, 2900
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	4 cut(s)	860, 1458, 1990, 2661
Eco24I	GRGCYC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	1087
Eco47I	GGWCC	4 cut(s)	1455, 1661, 1827, 2094
Eco57I	CTGAAG	4 cut(s)	314, 528, 1794, 2538
Eco81I	CCTNAGG	1 cut(s)	1185
Eco88I	CYCGRG	3 cut(s)	227, 625, 1222
EcoNI	CCTNNNNNAGG	2 cut(s)	1022, 1184
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	4 cut(s)	519, 869, 1332, 1696
EcoT14I	CCWWGG	4 cut(s)	860, 1458, 1990, 2661
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	4 cut(s)	860, 1458, 1990, 2661
FalI	AAGNNNNNCTT	6 cut(s)	784, 816, 1002, 1034, 2719, 2751
FaqI	GGGAC	3 cut(s)	567, 799, 1393
FauI	CCCGC	2 cut(s)	90, 2605
FbaI	TGATCA	6 cut(s)	2155, 2329, 2601, 2632, 2803, 2851
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	8 cut(s)	148, 598, 642, 1800, 1839, 2219, 2523, 2912
FokI	GGATG	6 cut(s)	671, 1475, 1481, 2155, 2499, 2873
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	8 cut(s)	148, 598, 642, 1800, 1839, 2219, 2523, 2912
FspBI	CTAG	5 cut(s)	401, 681, 2091, 2783, 2876
GlaI	GCGC	3 cut(s)	2187, 2231, 2690
GluI	GCNGC	8 cut(s)	148, 598, 642, 1800, 1839, 2219, 2523, 2912
GsuI	CTGGAG	1 cut(s)	1894
HaeII	RGCGCY	1 cut(s)	2692
HaeIII	GGCC	6 cut(s)	101, 524, 859, 918, 1995, 2413
HapII	CCGG	7 cut(s)	114, 253, 327, 697, 1223, 1619, 2097
HgaI	GACGC	6 cut(s)	212, 218, 281, 361, 1970, 2903
HhaI	GCGC	3 cut(s)	2188, 2232, 2691
Hin1I	GRCGYC	3 cut(s)	204, 210, 2914
Hin6I	GCGC	3 cut(s)	2186, 2230, 2689
HinP1I	GCGC	3 cut(s)	2186, 2230, 2689
HincII	GTYRAC	2 cut(s)	43, 1735
HindII	GTYRAC	2 cut(s)	43, 1735
HindIII	AAGCTT	2 cut(s)	174, 2444
HpaII	CCGG	7 cut(s)	114, 253, 327, 697, 1223, 1619, 2097
HphI	GGTGA	7 cut(s)	103, 454, 1514, 1577, 1775, 2861, 2876
Hpy166II	GTNNAC	8 cut(s)	43, 306, 1455, 1614, 1735, 2213, 2555, 2813
Hpy8I	GTNNAC	8 cut(s)	43, 306, 1455, 1614, 1735, 2213, 2555, 2813
HpyCH4III	ACNGT	7 cut(s)	558, 813, 1203, 1413, 1716, 2608, 2810
HpyCH4IV	ACGT	6 cut(s)	373, 602, 754, 1855, 2289, 2318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 521, 1557, 2227
HpyF3I	CTNAG	8 cut(s)	187, 379, 536, 645, 901, 1185, 2049, 2241
HpySE526I	ACGT	6 cut(s)	373, 602, 754, 1855, 2289, 2318
Hsp92I	GRCGYC	3 cut(s)	204, 210, 2914
HspAI	GCGC	3 cut(s)	2186, 2230, 2689
Kpn2I	TCCGGA	2 cut(s)	696, 1618
Ksp22I	TGATCA	6 cut(s)	2155, 2329, 2601, 2632, 2803, 2851
LguI	GCTCTTC	1 cut(s)	1971
LmnI	GCTCC	7 cut(s)	240, 249, 360, 1062, 1422, 2501, 2832
Lsp1109I	GCAGC	5 cut(s)	609, 628, 1811, 1825, 2534
LweI	GCATC	8 cut(s)	310, 472, 502, 649, 1459, 2122, 2173, 2629
MaeI	CTAG	5 cut(s)	401, 681, 2091, 2783, 2876
MaeII	ACGT	6 cut(s)	373, 602, 754, 1855, 2289, 2318
MaeIII	GTNAC	3 cut(s)	539, 2290, 2581
MbiI	CCGCTC	1 cut(s)	2575
MflI	RGATCY	4 cut(s)	502, 826, 897, 1270
MhlI	GDGCHC	5 cut(s)	125, 1059, 1562, 1911, 2289
MlsI	TGGCCA	1 cut(s)	524
MluI	ACGCGT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	7 cut(s)	179, 191, 200, 617, 1384, 1609, 1778
MmeI	TCCRAC	5 cut(s)	219, 225, 294, 2196, 2320
Mox20I	TGGCCA	1 cut(s)	524
MroI	TCCGGA	2 cut(s)	696, 1618
MroXI	GAANNNNTTC	3 cut(s)	374, 495, 2763
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	9 cut(s)	666, 759, 768, 842, 1191, 1277, 1443, 2069, 2926
MslI	CAYNNNNRTG	3 cut(s)	605, 1119, 2859
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	2218
MspI	CCGG	7 cut(s)	114, 253, 327, 697, 1223, 1619, 2097
MspR9I	CCNGG	7 cut(s)	521, 871, 1223, 1224, 1334, 1698, 2098
MvaI	CCWGG	4 cut(s)	521, 871, 1334, 1698
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	4 cut(s)	153, 521, 1557, 2227
NciI	CCSGG	3 cut(s)	1223, 1224, 2098
NlaIV	GGNNCC	8 cut(s)	251, 427, 828, 1272, 1424, 1552, 1996, 2842
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	1 cut(s)	1845
NspV	TTCGAA	1 cut(s)	72
PaeR7I	CTCGAG	2 cut(s)	227, 625
PagI	TCATGA	2 cut(s)	2635, 2854
PciSI	GCTCTTC	1 cut(s)	1971
PcsI	WCGNNNNNNNCGW	6 cut(s)	147, 159, 210, 216, 225, 339
PdmI	GAANNNNTTC	3 cut(s)	374, 495, 2763
PflFI	GACNNNGTC	1 cut(s)	2092
PflMI	CCANNNNNTGG	1 cut(s)	1991
PfoI	TCCNGGA	2 cut(s)	1332, 2096
PkrI	GCNGC	8 cut(s)	149, 599, 643, 1801, 1840, 2220, 2524, 2913
PleI	GAGTC	7 cut(s)	179, 191, 199, 617, 1384, 1609, 1778
PpsI	GAGTC	7 cut(s)	179, 191, 199, 617, 1384, 1609, 1778
PshAI	GACNNNNGTC	1 cut(s)	1632
Psp1406I	AACGTT	1 cut(s)	373
Psp6I	CCWGG	4 cut(s)	519, 869, 1332, 1696
PspGI	CCWGG	4 cut(s)	519, 869, 1332, 1696
PspN4I	GGNNCC	8 cut(s)	251, 427, 828, 1272, 1424, 1552, 1996, 2842
PspPI	GGNCC	9 cut(s)	99, 857, 917, 1455, 1661, 1827, 1994, 2094, 2411
PspXI	VCTCGAGB	2 cut(s)	227, 625
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	4 cut(s)	502, 826, 897, 1270
PsyI	GACNNNGTC	1 cut(s)	2092
RsaI	GTAC	4 cut(s)	307, 1858, 2239, 2271
RsaNI	GTAC	4 cut(s)	306, 1857, 2238, 2270
RseI	CAYNNNNRTG	3 cut(s)	605, 1119, 2859
SalI	GTCGAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	1971
SaqAI	TTAA	9 cut(s)	666, 759, 768, 842, 1191, 1277, 1443, 2069, 2926
SatI	GCNGC	8 cut(s)	148, 598, 642, 1800, 1839, 2219, 2523, 2912
Sau96I	GGNCC	9 cut(s)	99, 857, 917, 1455, 1661, 1827, 1994, 2094, 2411
ScaI	AGTACT	1 cut(s)	2239
SchI	GAGTC	7 cut(s)	179, 191, 200, 617, 1384, 1609, 1778
ScrFI	CCNGG	7 cut(s)	521, 871, 1223, 1224, 1334, 1698, 2098
SduI	GDGCHC	5 cut(s)	125, 1059, 1562, 1911, 2289
SfaNI	GCATC	8 cut(s)	310, 472, 502, 649, 1459, 2122, 2173, 2629
SfcI	CTRYAG	2 cut(s)	1488, 1521
Sfr274I	CTCGAG	2 cut(s)	227, 625
SfuI	TTCGAA	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	41
SinI	GGWCC	4 cut(s)	1455, 1661, 1827, 2094
SlaI	CTCGAG	2 cut(s)	227, 625
SmaI	CCCGGG	1 cut(s)	1224
SmiMI	CAYNNNNRTG	3 cut(s)	605, 1119, 2859
SmlI	CTYRAG	3 cut(s)	227, 625, 1786
SmoI	CTYRAG	3 cut(s)	227, 625, 1786
SsiI	CCGC	9 cut(s)	77, 97, 147, 238, 2218, 2575, 2612, 2911, 2922
SspMI	CTAG	5 cut(s)	401, 681, 2091, 2783, 2876
StyD4I	CCNGG	7 cut(s)	519, 869, 1221, 1222, 1332, 1696, 2096
StyI	CCWWGG	4 cut(s)	860, 1458, 1990, 2661
TaaI	ACNGT	7 cut(s)	558, 813, 1203, 1413, 1716, 2608, 2810
TaiI	ACGT	6 cut(s)	376, 605, 757, 1858, 2292, 2321
TaqI	TCGA	9 cut(s)	42, 72, 228, 260, 626, 985, 1702, 1806, 1852
TatI	WGTACW	2 cut(s)	305, 2237
TauI	GCSGC	3 cut(s)	150, 2221, 2914
Tru1I	TTAA	9 cut(s)	666, 759, 768, 842, 1191, 1277, 1443, 2069, 2926
Tru9I	TTAA	9 cut(s)	666, 759, 768, 842, 1191, 1277, 1443, 2069, 2926
TscAI	CASTG	7 cut(s)	540, 816, 1406, 1562, 1721, 2613, 2813
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	5 cut(s)	597, 641, 1799, 1838, 2522
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	6 cut(s)	474, 875, 966, 974, 1089, 2765
TspGWI	ACGGA	3 cut(s)	28, 1383, 2190
TspMI	CCCGGG	1 cut(s)	1222
TspRI	CASTG	7 cut(s)	540, 816, 1406, 1562, 1721, 2613, 2813
Tth111I	GACNNNGTC	1 cut(s)	2092
Van91I	CCANNNNNTGG	1 cut(s)	1991
VpaK11BI	GGWCC	4 cut(s)	1455, 1661, 1827, 2094
XagI	CCTNNNNNAGG	2 cut(s)	1022, 1184
XapI	RAATTY	3 cut(s)	262, 462, 689
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	1 cut(s)	1845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2501
XhoI	CTCGAG	2 cut(s)	227, 625
XmaI	CCCGGG	1 cut(s)	1222
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	3 cut(s)	374, 495, 2763
XspI	CTAG	5 cut(s)	401, 681, 2091, 2783, 2876
ZrmI	AGTACT	1 cut(s)	2239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.