Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004110.1

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

30717 .. 31055

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004110.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggtgcttcaatatcatggaggaaactcaaatgtcgatgacattgatcatattttggcttcaatcaaagatgttgagattacttctcatagcattagagagttcctgcctaaggttaactggcagcggttggcttccatgtatgttcctggtcgttccggtgaagaatatgaagcaaggtggttgaactgggaggatcccttaatcaaccatgaaccatggactgtagatgaggacaaaagaattctggagcttgttcagaagcagggggtcaatgattggattgatatagcacctgcatcactatttctaaaagggattaacaggactccattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

112

Amino Acids

13.03

Weight (kDa)

4.93

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	304
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	2 cut(s)	191, 204
AcsI	RAATTY	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	11, 63, 187
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
AlwI	GGATC	2 cut(s)	191, 204
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	150
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	125, 194
Bse21I	CCTNAGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseNI	ACTGG	2 cut(s)	125, 194
BseXI	GCAGC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	46, 196
Bsp19I	CCATGG	1 cut(s)	218
BspACI	CCGC	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	191, 204
BsrI	ACTGG	2 cut(s)	125, 194
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	46, 196
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	218
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	49, 199
BstMBI	GATC	2 cut(s)	46, 196
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	218
BveI	ACCTGC	1 cut(s)	304
CviAII	CATG	4 cut(s)	17, 139, 212, 219
CviJI	RGCY	3 cut(s)	59, 134, 253
CviKI_1	RGCY	3 cut(s)	59, 134, 253
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	48, 198
DpnII	GATC	2 cut(s)	46, 196
Eco130I	CCWWGG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	20, 142, 215, 222
FaiI	YATR	9 cut(s)	18, 51, 90, 140, 144, 171, 213, 220, 290
FatI	CATG	4 cut(s)	16, 138, 211, 218
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	269
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	4 cut(s)	20, 142, 215, 222
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	328
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	20, 142, 215, 222
Ksp22I	TGATCA	1 cut(s)	46
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	46, 196
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	308
MalI	GATC	2 cut(s)	48, 198
MboI	GATC	2 cut(s)	46, 196
MboII	GAAGA	1 cut(s)	176
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	3 cut(s)	14, 187, 226
MseI	TTAA	3 cut(s)	117, 203, 321
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	46, 196
NlaIII	CATG	4 cut(s)	20, 142, 215, 222
NlaIV	GGNNCC	1 cut(s)	198
PaqCI	CACCTGC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	117, 203, 321
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	46, 196
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	4 cut(s)	117, 182, 255, 298
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	3 cut(s)	117, 203, 321
Tru9I	TTAA	3 cut(s)	117, 203, 321
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	186, 228
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.