Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002822.1

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Reverse (-)

100240 .. 104851

Gene Structure 4612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002822.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ctgaagagtagcttcaatgtcagactcgatggcggagtagaggcgagcgaaggcatcggcaccggagacattagagtctttctacttgtagatgtcgtatcggtcgtacttgttgcagatcgcggcgaaggcatcgttcccagagacgtaagtccttccaacctcgccgacaacgacgtgttttggcggatcacggcagaagaaaccgatcaaaattctgggtggggtatgatggggatgaacgagtataaagacctagatagaaagttttgttttgctgggcaatcgggattcgggagccaccctacccttgaaaccctcttcgacgacacacaattctggatcaacctcccgcgcctcaacaagccttcctcattccaggtgctcgacgccgccgtctcgccagagctgcctgttgatgtgtccatatgggaagggacgtgcgattcggcatcaatggggctgccagtgagtccatggcaattggctggagatcagtcacctgtgtccattgtgccggtacgcaatgccgactgtggaggaagtgcctggaacggagtaagggaggttgcattggctgctaatccttcacaactctgggtctctggcttttgccgcatgccgaaattcttcaagggcttctggacaatgaatgcgcagccacatgcagatgcacacaatacggcagaagccctctctcatcagctacaaacggcagaagcaagaatccatgaactccagcaagaattgacatctgttcgcctgaatgaaacagcaatgaatagtaagctcaggagtgcttcacaaggaaaacgtttaagggtagagaactatgaaatgaatgtggactctgttcaagacgggttattgagtgactggaatccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0012505 GO:0015629 GO:0017076 GO:0019001 GO:0019221 GO:0023052 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034097 GO:0034340 GO:0034341 GO:0034504 GO:0034612 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0060333 GO:0060337 GO:0065007 GO:0070013 GO:0070555 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071347 GO:0071356 GO:0071357 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

295

Amino Acids

32.37

Weight (kDa)

4.69

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	74, 395
Acc16I	TGCGCA	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	59
AccII	CGCG	2 cut(s)	123, 355
AciI	CCGC	6 cut(s)	33, 123, 187, 353, 393, 616
AclI	AACGTT	1 cut(s)	814
AclWI	GGATC	2 cut(s)	197, 350
AcsI	RAATTY	2 cut(s)	214, 626
AcuI	CTGAAG	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	2 cut(s)	108, 522
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	16, 314, 634, 857
AjiI	CACGTC	2 cut(s)	178, 441
AjnI	CCWGG	2 cut(s)	378, 548
AluBI	AGCT	4 cut(s)	12, 409, 706, 790
AluI	AGCT	4 cut(s)	12, 409, 706, 790
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	4 cut(s)	60, 138, 403, 607
AlwI	GGATC	2 cut(s)	197, 350
ApeKI	GCWGC	4 cut(s)	409, 463, 578, 658
ApoI	RAATTY	2 cut(s)	214, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	2 cut(s)	357, 658
AsuHPI	GGTGA	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	4 cut(s)	396, 450, 565, 670
BccI	CCATC	2 cut(s)	23, 226
BceAI	ACGGC	4 cut(s)	210, 380, 699, 729
BciT130I	CCWGG	2 cut(s)	380, 550
BcoDI	GTCTC	4 cut(s)	60, 138, 403, 607
BfaI	CTAG	1 cut(s)	257
BisI	GCNGC	7 cut(s)	124, 393, 410, 464, 579, 616, 659
BlsI	GCNGC	7 cut(s)	125, 394, 411, 465, 580, 617, 660
Bme1390I	CCNGG	2 cut(s)	380, 550
BmgBI	CACGTC	2 cut(s)	178, 441
BmiI	GGNNCC	2 cut(s)	61, 299
BmrFI	CCNGG	2 cut(s)	380, 550
BmsI	GCATC	4 cut(s)	63, 141, 461, 661
BoxI	GACNNNNGTC	1 cut(s)	150
BpmI	CTGGAG	2 cut(s)	510, 722
Bpu10I	CCTNAGC	1 cut(s)	791
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	467, 881
Bse3DI	GCAATG	2 cut(s)	532, 783
BseBI	CCWGG	2 cut(s)	380, 550
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	243
BseMI	GCAATG	2 cut(s)	532, 783
BseMII	CTCAG	1 cut(s)	805
BseNI	ACTGG	2 cut(s)	467, 881
BseXI	GCAGC	4 cut(s)	396, 450, 565, 670
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	123, 355
Bsh1285I	CGRYCG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	63, 518
BslFI	GGGAC	1 cut(s)	451
BsmAI	GTCTC	4 cut(s)	60, 138, 403, 607
BsmBI	CGTCTC	2 cut(s)	138, 403
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	658
Bso31I	GGTCTC	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	5 cut(s)	118, 189, 208, 342, 493
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	6 cut(s)	33, 123, 187, 353, 393, 616
BspCNI	CTCAG	1 cut(s)	804
BspFNI	CGCG	2 cut(s)	123, 355
BspLI	GGNNCC	2 cut(s)	61, 299
BspPI	GGATC	2 cut(s)	197, 350
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	607
BsrDI	GCAATG	2 cut(s)	532, 783
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	467, 881
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	5 cut(s)	118, 189, 208, 342, 493
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	2 cut(s)	380, 550
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	46, 620
BstDEI	CTNAG	1 cut(s)	791
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	2 cut(s)	123, 355
BstHHI	GCGC	2 cut(s)	357, 658
BstKTI	GATC	5 cut(s)	121, 192, 211, 345, 496
BstMAI	GTCTC	4 cut(s)	60, 138, 403, 607
BstMBI	GATC	5 cut(s)	118, 189, 208, 342, 493
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 409, 578, 615
BstNI	CCWGG	2 cut(s)	380, 550
BstNSI	RCATGY	2 cut(s)	622, 668
BstPAI	GACNNNNGTC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	378, 548
BstUI	CGCG	2 cut(s)	123, 355
BstV1I	GCAGC	4 cut(s)	396, 450, 565, 670
BtgI	CCRYGG	1 cut(s)	476
BtrI	CACGTC	2 cut(s)	178, 441
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	46, 620
CfoI	GCGC	2 cut(s)	357, 658
Cfr10I	RCCGGY	1 cut(s)	517
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	107, 521
CviAII	CATG	5 cut(s)	477, 619, 665, 731, 885
CviQI	GTAC	2 cut(s)	107, 521
DdeI	CTNAG	1 cut(s)	791
DpnI	GATC	5 cut(s)	120, 191, 210, 344, 495
DpnII	GATC	5 cut(s)	118, 189, 208, 342, 493
DrdI	GACNNNNNNGTC	2 cut(s)	74, 395
DseDI	GACNNNNNNGTC	2 cut(s)	74, 395
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	2 cut(s)	48, 202
Eco130I	CCWWGG	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	378, 548
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
Esp3I	CGTCTC	2 cut(s)	138, 403
FaeI	CATG	5 cut(s)	480, 622, 668, 734, 888
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	5 cut(s)	476, 618, 664, 730, 884
FauI	CCCGC	1 cut(s)	360
FauNDI	CATATG	1 cut(s)	428
Fnu4HI	GCNGC	7 cut(s)	124, 393, 410, 464, 579, 616, 659
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	7 cut(s)	124, 393, 410, 464, 579, 616, 659
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	657
GlaI	GCGC	2 cut(s)	356, 657
GluI	GCNGC	7 cut(s)	124, 393, 410, 464, 579, 616, 659
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	510, 722
HapII	CCGG	2 cut(s)	63, 518
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	2 cut(s)	357, 658
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	5 cut(s)	480, 622, 668, 734, 888
Hin6I	GCGC	2 cut(s)	355, 656
HinP1I	GCGC	2 cut(s)	355, 656
HinfI	GANTC	8 cut(s)	24, 75, 291, 446, 472, 726, 848, 880
HpaII	CCGG	2 cut(s)	63, 518
HphI	GGTGA	1 cut(s)	492
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	6 cut(s)	288, 295, 340, 643, 793, 857
Hpy8I	GTNNAC	1 cut(s)	847
Hpy99I	CGWCG	3 cut(s)	179, 329, 392
HpyAV	CCTTC	6 cut(s)	44, 122, 165, 378, 428, 597
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	4 cut(s)	147, 177, 440, 814
HpyCH4V	TGCA	4 cut(s)	116, 572, 668, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 409, 578, 615
HpyF3I	CTNAG	1 cut(s)	791
HpySE526I	ACGT	4 cut(s)	147, 177, 440, 814
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	5 cut(s)	480, 622, 668, 734, 888
HspAI	GCGC	2 cut(s)	355, 656
Kzo9I	GATC	5 cut(s)	118, 189, 208, 342, 493
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	4 cut(s)	396, 450, 565, 670
LweI	GCATC	4 cut(s)	63, 141, 461, 661
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	4 cut(s)	147, 177, 440, 814
MaeIII	GTNAC	2 cut(s)	498, 872
MalI	GATC	5 cut(s)	120, 191, 210, 344, 495
MboI	GATC	5 cut(s)	118, 189, 208, 342, 493
MboII	GAAGA	4 cut(s)	16, 212, 313, 622
MfeI	CAATTG	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	5 cut(s)	214, 335, 482, 626, 746
MlyI	GAGTC	4 cut(s)	18, 84, 481, 842
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	9 cut(s)	34, 173, 329, 359, 368, 382, 533, 559, 704
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	1 cut(s)	818
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	2 cut(s)	63, 518
MspR9I	CCNGG	2 cut(s)	380, 550
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	2 cut(s)	380, 550
MvnI	CGCG	2 cut(s)	123, 355
MwoI	GCNNNNNNNGC	4 cut(s)	129, 409, 578, 615
NcoI	CCATGG	1 cut(s)	476
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	5 cut(s)	118, 189, 208, 342, 493
NlaIII	CATG	5 cut(s)	480, 622, 668, 734, 888
NlaIV	GGNNCC	2 cut(s)	61, 299
NmuCI	GTSAC	2 cut(s)	498, 872
NsbI	TGCGCA	1 cut(s)	657
NspI	RCATGY	2 cut(s)	622, 668
PaeI	GCATGC	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 171, 393
PctI	GAATGC	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	291, 446, 726, 880
PkrI	GCNGC	7 cut(s)	125, 394, 411, 465, 580, 617, 660
PleI	GAGTC	4 cut(s)	18, 83, 480, 842
PpsI	GAGTC	4 cut(s)	18, 83, 480, 842
PshAI	GACNNNNGTC	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	814
Psp6I	CCWGG	2 cut(s)	378, 548
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	378, 548
PspN4I	GGNNCC	2 cut(s)	61, 299
RsaI	GTAC	2 cut(s)	108, 522
RsaNI	GTAC	2 cut(s)	107, 521
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	1 cut(s)	818
SatI	GCNGC	7 cut(s)	124, 393, 410, 464, 579, 616, 659
Sau3AI	GATC	5 cut(s)	118, 189, 208, 342, 493
SchI	GAGTC	4 cut(s)	18, 84, 481, 842
ScrFI	CCNGG	2 cut(s)	380, 550
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	4 cut(s)	63, 141, 461, 661
SmiMI	CAYNNNNRTG	1 cut(s)	669
SphI	GCATGC	1 cut(s)	622
Sse9I	AATT	5 cut(s)	214, 335, 482, 626, 746
SsiI	CCGC	6 cut(s)	33, 123, 187, 353, 393, 616
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	378, 548
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	4 cut(s)	150, 180, 443, 817
TaqI	TCGA	3 cut(s)	27, 324, 387
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	5 cut(s)	214, 335, 482, 626, 746
TauI	GCSGC	3 cut(s)	126, 395, 618
TfiI	GAWTC	4 cut(s)	291, 446, 726, 880
Tru1I	TTAA	1 cut(s)	818
Tru9I	TTAA	1 cut(s)	818
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	498, 872
TseI	GCWGC	4 cut(s)	409, 463, 578, 658
Tsp45I	GTSAC	2 cut(s)	498, 872
TspDTI	ATGAA	7 cut(s)	254, 665, 747, 783, 794, 849, 854
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	214, 626
XceI	RCATGY	2 cut(s)	622, 668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.