Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Reverse (-)

15125839 .. 15127771

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATGGGGATGAATGAGCATAAAGATCTAGATAGAATGTTTTGTTTTGCTGGGCAATCGGGATTCGGGAGCCACCCTACCCTTGAAATTACCCTCCTCGATGACACACAATTCTGGATCAACCTCCCGCGCCTCAACAAGCCTTCCTCATTCCAGGTGCTCGACGTCGCCGTCTCGCCAGAGCTGCCTGTTGATGTGTCCATATGGGAAGTGACGTGCCATTCGGCATCGATGGGGCTGCCACTGTTTTTGAAAGGTGCCTGCGTACCTCAGCGGACTGATAATATGTGCTGGAGGAGATGGAAGGTGTTGTTTCCAGAAGAAGTGCTGTTGCTCAGAGAAGAGAGGAGAATACGTAAAGCTGCTCTTATCAGCAATTTTGTTGATCGCGAGAAAGAACGCCCAGCTCTTGGCCCTAATAATTTTCTTGTAGCAGAGGATACTTCAACTTTTCCGAGGAAGACTGGGAATATAAAAAAAGGATCACAATCTGGAAAGAAAAACAATATCTCTTCGAATTGTCAAGTTATAAAGAAGATTAGACCCAAGAGGCGTAAAAACTACGATCAAATTTGTTCTGATGAGGCTGACATATGTAATGGGGATGATGCCTCAGATTGGGATGATACTATTGCTTGCTTTGCACATACAGTAAAGAAGATAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

223

Amino Acids

25.39

Weight (kDa)

8.6

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccII	CGCG	2 cut(s)	130, 390
AciI	CCGC	2 cut(s)	128, 274
AclWI	GGATC	2 cut(s)	125, 490
AcsI	RAATTY	1 cut(s)	570
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	410, 618
AgsI	TTSAA	3 cut(s)	86, 253, 447
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	184, 362, 407, 667
AluI	AGCT	4 cut(s)	184, 362, 407, 667
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	125, 490
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	3 cut(s)	184, 238, 362
ApoI	RAATTY	1 cut(s)	570
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	413
AsuII	TTCGAA	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	171, 225, 349
BccI	CCATC	2 cut(s)	226, 294
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	433
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	3 cut(s)	185, 239, 363
BlsI	GCNGC	3 cut(s)	186, 240, 364
Bme1390I	CCNGG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	71, 259
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	236, 598
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	467
BpmI	CTGGAG	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	515
Bsa29I	ATCGAT	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	487
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 618
Bse1I	ACTGG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	3 cut(s)	15, 610, 628
BseJI	GATNNNNATC	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	410, 618
BseMII	CTCAG	3 cut(s)	284, 349, 627
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	3 cut(s)	86, 310, 361
BseXI	GCAGC	3 cut(s)	171, 225, 349
BseYI	CCCAGC	2 cut(s)	50, 403
Bsh1236I	CGCG	2 cut(s)	130, 390
BshFI	GGCC	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	410, 618
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	414
Bsp119I	TTCGAA	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	5 cut(s)	25, 117, 385, 482, 565
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	2 cut(s)	128, 274
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	3 cut(s)	283, 348, 626
BspDI	ATCGAT	1 cut(s)	230
BspFNI	CGCG	2 cut(s)	130, 390
BspLI	GGNNCC	2 cut(s)	71, 259
BspPI	GGATC	2 cut(s)	125, 490
BspT104I	TTCGAA	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	5 cut(s)	25, 117, 385, 482, 565
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	246, 652
Bst6I	CTCTTC	2 cut(s)	336, 517
BstACI	GRCGYC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	262, 637
BstDEI	CTNAG	3 cut(s)	270, 335, 613
BstF5I	GGATG	3 cut(s)	15, 610, 628
BstFNI	CGCG	2 cut(s)	130, 390
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	5 cut(s)	28, 120, 388, 485, 568
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	5 cut(s)	25, 117, 385, 482, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 641
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSNI	TACGTA	1 cut(s)	356
BstUI	CGCG	2 cut(s)	130, 390
BstV1I	GCAGC	3 cut(s)	171, 225, 349
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	230
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	15, 610, 628
BtsIMutI	CAGTG	1 cut(s)	242
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	262, 637
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	413
ClaI	ATCGAT	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	266
CspCI	CAANNNNNGTGG	2 cut(s)	231, 266
CviJI	RGCY	9 cut(s)	72, 142, 184, 238, 362, 407, 414, 587, 667
CviKI_1	RGCY	9 cut(s)	72, 142, 184, 238, 362, 407, 414, 587, 667
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	3 cut(s)	270, 335, 613
DpnI	GATC	5 cut(s)	27, 119, 387, 484, 567
DpnII	GATC	5 cut(s)	25, 117, 385, 482, 565
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	2 cut(s)	336, 517
EarI	CTCTTC	2 cut(s)	336, 517
Eco105I	TACGTA	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	178
FaiI	YATR	9 cut(s)	21, 203, 205, 287, 473, 530, 593, 595, 648
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FauI	CCCGC	1 cut(s)	135
FauNDI	CATATG	2 cut(s)	203, 593
Fnu4HI	GCNGC	3 cut(s)	185, 239, 363
FokI	GGATG	3 cut(s)	22, 617, 635
Fsp4HI	GCNGC	3 cut(s)	185, 239, 363
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	3 cut(s)	185, 239, 363
GsaI	CCCAGC	2 cut(s)	54, 407
GsuI	CTGGAG	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	1 cut(s)	63
Hpy188I	TCNGA	4 cut(s)	338, 456, 580, 616
Hpy188III	TCNNGA	7 cut(s)	29, 60, 67, 115, 317, 389, 492
Hpy99I	CGWCG	2 cut(s)	167, 170
HpyAV	CCTTC	2 cut(s)	153, 298
HpyCH4III	ACNGT	2 cut(s)	246, 652
HpyCH4IV	ACGT	3 cut(s)	165, 215, 355
HpyCH4V	TGCA	1 cut(s)	644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 641
HpyF3I	CTNAG	3 cut(s)	270, 335, 613
HpySE526I	ACGT	3 cut(s)	165, 215, 355
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	25, 117, 385, 482, 565
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	3 cut(s)	171, 225, 349
LweI	GCATC	2 cut(s)	236, 598
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	3 cut(s)	165, 215, 355
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	5 cut(s)	27, 119, 387, 484, 567
MboI	GATC	5 cut(s)	25, 117, 385, 482, 565
MboII	GAAGA	6 cut(s)	332, 353, 472, 504, 547, 670
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	6 cut(s)	87, 110, 376, 421, 517, 570
MseI	TTAA	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	130, 390
MwoI	GCNNNNNNNGC	2 cut(s)	184, 641
NdeI	CATATG	2 cut(s)	203, 593
NdeII	GATC	5 cut(s)	25, 117, 385, 482, 565
NlaIV	GGNNCC	2 cut(s)	71, 259
NmuCI	GTSAC	1 cut(s)	211
NruI	TCGCGA	1 cut(s)	390
NspV	TTCGAA	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	186, 240, 364
Ppu21I	YACGTR	1 cut(s)	356
PsiI	TTATAA	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	2 cut(s)	50, 403
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	71, 259
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	25
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	670
SatI	GCNGC	3 cut(s)	185, 239, 363
Sau3AI	GATC	5 cut(s)	25, 117, 385, 482, 565
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	236, 598
SfuI	TTCGAA	1 cut(s)	515
SnaBI	TACGTA	1 cut(s)	356
Sse9I	AATT	6 cut(s)	87, 110, 376, 421, 517, 570
SsiI	CCGC	2 cut(s)	128, 274
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	246, 652
TaiI	ACGT	3 cut(s)	168, 218, 358
TaqI	TCGA	4 cut(s)	99, 162, 230, 515
TasI	AATT	6 cut(s)	87, 110, 376, 421, 517, 570
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	184, 238, 362
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	249
Van91I	CCANNNNNTGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	570
XbaI	TCTAGA	1 cut(s)	28
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.