Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Reverse (-)

55838066 .. 55840381

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0419600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGTTGTGTCAAATTTCGGGTCAATTGGCATTCAAATCGGGTCATCTGCCCCCAAGCTCCGTCATTCGAATGACCTGCGCACCGGACGTAAAATCTCGGAACCGGATGTTCATCGCCGGAATGGGTTTCGTCGGACAGGCGTTGACGCTTGACCTCAAGAAGCAGGGATGGGATGTCTCTGGGACTTGTACAAGCATTACCAAGAAGAAGAAACTCGAGGAAGAAATGGGCTTTGATATGTACCTATTTGATGCAAATGAACCAGATGTGACCACCATGGATGTTATGAAGCTCCATACTCACATGGTTGTGTCAGTCCCTCCAATTCCTGGTATTGGTGATCCGATGCTGCAACATGAACAACTTCTAAGGAAAGCACTTTTGGGGGGAAATCTTCAATGGCTTTGCTATTTGTCCTCAACTAGTGTATATGGAGATTGTGATGGTGCATGGGTAGATGAGGATTATCCCCCTAACCCCACAAGGGAGGTGGGAAAATTAAGGTTAGCTGCTGAGAAAGGATGGTTACACTTGGGGCAGAGTTTGGGCATCTCAACAAAAGTATTTCGGCTCGGAGGTATCTATGGTCCTGGTAGAAGTGCTGTTGACACCATAATCAAGCAGGAAGCCTTATCAAAAAGTCAGAGAATGAGAGGATATAGGCAGTTCACATCAAGGACTCATGTTGAGGACATTTGTCAAGCTATTGAGGCCAGTATTTGCACAGCTTCCTCCAGGGAAGTTTATAATATTGTTGATGATGATCCTGCCCCAAGGGAAGCAGTGTTTGAGCATGCAAGAGACTTGCTTGACAAAAAATGGCCAGGCTGGATCAAACAGGCTTCTGAACAAAGAGAATCTACAGTAACTGTTATGAAAGATGGTTCGATGGGTGAGAAGAGAGTTTGCAATGCTCGTATGAAGAAGGAACTAGGACTTAGGCTTCTTCATCCTAGTTATAGATCAGGATTACAAAGTATTATTGACCAAATGGATAAACCATTTTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

338

Amino Acids

37.73

Weight (kDa)

8.05

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	39 - 252	1.4e-07	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
Acc16I	TGCGCA	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	332
AclWI	GGATC	3 cut(s)	338, 761, 842
AcoI	YGGCCR	1 cut(s)	824
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	2 cut(s)	193, 245
AfiI	CCNNNNNNNGG	3 cut(s)	332, 338, 487
AgsI	TTSAA	3 cut(s)	37, 401, 1011
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	4 cut(s)	331, 592, 737, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	5 cut(s)	60, 295, 512, 707, 731
AluI	AGCT	5 cut(s)	60, 295, 512, 707, 731
Alw26I	GTCTC	2 cut(s)	184, 798
AlwI	GGATC	3 cut(s)	338, 761, 842
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	714, 824
ApeKI	GCWGC	2 cut(s)	352, 512
ApoI	RAATTY	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	353, 908
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	826
BbvI	GCAGC	2 cut(s)	339, 499
BccI	CCATC	5 cut(s)	165, 440, 519, 878, 886
BcgI	CGANNNNNNTGC	4 cut(s)	21, 55, 60, 94
BciT130I	CCWGG	4 cut(s)	333, 594, 739, 828
BcoDI	GTCTC	2 cut(s)	184, 798
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	3 cut(s)	426, 935, 957
BfmI	CTRYAG	1 cut(s)	864
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	353, 513
BlsI	GCNGC	2 cut(s)	354, 514
Bme1390I	CCNGG	4 cut(s)	333, 594, 739, 828
Bme18I	GGWCC	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	4 cut(s)	333, 594, 739, 828
BmsI	GCATC	3 cut(s)	244, 339, 561
BoxI	GACNNNNGTC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	721
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	2 cut(s)	113, 765
BsaJI	CCNNGG	3 cut(s)	279, 738, 776
BsaWI	WCCGGW	2 cut(s)	85, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 338, 487
Bse1I	ACTGG	1 cut(s)	717
Bse3DI	GCAATG	1 cut(s)	919
Bse8I	GATNNNNATC	2 cut(s)	113, 765
BseBI	CCWGG	4 cut(s)	333, 594, 739, 828
BseDI	CCNNGG	3 cut(s)	279, 738, 776
BseGI	GGATG	6 cut(s)	114, 176, 181, 289, 530, 952
BseJI	GATNNNNATC	2 cut(s)	113, 765
BseLI	CCNNNNNNNGG	3 cut(s)	332, 338, 487
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	717
BseXI	GCAGC	2 cut(s)	339, 499
BshFI	GGCC	2 cut(s)	716, 826
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	86, 106, 120
BslFI	GGGAC	2 cut(s)	199, 305
BslI	CCNNNNNNNGG	3 cut(s)	332, 338, 487
BsmAI	GTCTC	2 cut(s)	184, 798
BsmFI	GGGAC	2 cut(s)	199, 305
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	716, 826
BsoBI	CYCGRG	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	4 cut(s)	343, 766, 834, 965
Bsp19I	CCATGG	1 cut(s)	279
BspANI	GGCC	2 cut(s)	716, 826
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	104
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	3 cut(s)	338, 761, 842
BspT104I	TTCGAA	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	919
BsrGI	TGTACA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	3 cut(s)	279, 738, 776
BssMI	GATC	4 cut(s)	343, 766, 834, 965
BssT1I	CCWWGG	2 cut(s)	279, 776
Bst2UI	CCWGG	4 cut(s)	333, 594, 739, 828
Bst4CI	ACNGT	2 cut(s)	868, 874
Bst6I	CTCTTC	1 cut(s)	896
BstAUI	TGTACA	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	3 cut(s)	371, 516, 941
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	6 cut(s)	114, 176, 181, 289, 530, 952
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	4 cut(s)	346, 769, 837, 968
BstMAI	GTCTC	2 cut(s)	184, 798
BstMBI	GATC	4 cut(s)	343, 766, 834, 965
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	4 cut(s)	333, 594, 739, 828
BstNSI	RCATGY	1 cut(s)	800
BstPAI	GACNNNNGTC	1 cut(s)	699
BstSCI	CCNGG	4 cut(s)	331, 592, 737, 826
BstSFI	CTRYAG	1 cut(s)	864
BstV1I	GCAGC	2 cut(s)	339, 499
BsuRI	GGCC	2 cut(s)	716, 826
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	6 cut(s)	114, 176, 181, 289, 530, 952
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	1 cut(s)	792
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	192, 244
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	6 cut(s)	280, 307, 359, 453, 686, 797
CviQI	GTAC	2 cut(s)	192, 244
DdeI	CTNAG	3 cut(s)	371, 516, 941
DpnI	GATC	4 cut(s)	345, 768, 836, 967
DpnII	GATC	4 cut(s)	343, 766, 834, 965
EaeI	YGGCCR	1 cut(s)	824
Eam1104I	CTCTTC	1 cut(s)	896
EarI	CTCTTC	1 cut(s)	896
Eco130I	CCWWGG	2 cut(s)	279, 776
Eco47I	GGWCC	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	218
EcoRII	CCWGG	4 cut(s)	331, 592, 737, 826
EcoT14I	CCWWGG	2 cut(s)	279, 776
ErhI	CCWWGG	2 cut(s)	279, 776
FaeI	CATG	6 cut(s)	283, 310, 362, 456, 689, 800
FaqI	GGGAC	2 cut(s)	199, 305
FatI	CATG	6 cut(s)	279, 306, 358, 452, 685, 796
Fnu4HI	GCNGC	2 cut(s)	353, 513
FokI	GGATG	6 cut(s)	121, 183, 188, 296, 537, 939
Fsp4HI	GCNGC	2 cut(s)	353, 513
FspBI	CTAG	3 cut(s)	426, 935, 957
FspI	TGCGCA	1 cut(s)	82
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	2 cut(s)	353, 513
GsuI	CTGGAG	1 cut(s)	721
HaeIII	GGCC	2 cut(s)	716, 826
HapII	CCGG	3 cut(s)	86, 106, 120
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	6 cut(s)	283, 310, 362, 456, 689, 800
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	2 cut(s)	147, 610
HindII	GTYRAC	2 cut(s)	147, 610
HinfI	GANTC	2 cut(s)	682, 860
HpaII	CCGG	3 cut(s)	86, 106, 120
HphI	GGTGA	2 cut(s)	353, 908
Hpy166II	GTNNAC	3 cut(s)	147, 610, 672
Hpy188I	TCNGA	6 cut(s)	102, 137, 348, 578, 648, 850
Hpy188III	TCNNGA	2 cut(s)	160, 969
Hpy8I	GTNNAC	3 cut(s)	147, 610, 672
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	922
HpyCH4III	ACNGT	2 cut(s)	868, 874
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	6 cut(s)	257, 355, 452, 726, 800, 912
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	3 cut(s)	371, 516, 941
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	6 cut(s)	283, 310, 362, 456, 689, 800
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	343, 766, 834, 965
LmnI	GCTCC	2 cut(s)	65, 300
Lsp1109I	GCAGC	2 cut(s)	339, 499
LweI	GCATC	3 cut(s)	244, 339, 561
MaeI	CTAG	3 cut(s)	426, 935, 957
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	271, 528, 868
MalI	GATC	4 cut(s)	345, 768, 836, 967
MboI	GATC	4 cut(s)	343, 766, 834, 965
MboII	GAAGA	7 cut(s)	220, 223, 236, 389, 913, 937, 941
MfeI	CAATTG	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	826
MluCI	AATT	4 cut(s)	15, 26, 327, 500
MluNI	TGGCCA	1 cut(s)	826
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	1 cut(s)	115
Mox20I	TGGCCA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	826
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	2 cut(s)	71, 311
Msp20I	TGGCCA	1 cut(s)	826
MspI	CCGG	3 cut(s)	86, 106, 120
MspR9I	CCNGG	4 cut(s)	333, 594, 739, 828
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	4 cut(s)	333, 594, 739, 828
MwoI	GCNNNNNNNGC	1 cut(s)	713
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	4 cut(s)	343, 766, 834, 965
NlaIII	CATG	6 cut(s)	283, 310, 362, 456, 689, 800
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	271
NsbI	TGCGCA	1 cut(s)	82
NspI	RCATGY	1 cut(s)	800
NspV	TTCGAA	1 cut(s)	70
PaeI	GCATGC	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	218
PctI	GAATGC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	860
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	354, 514
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PshAI	GACNNNNGTC	1 cut(s)	699
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	4 cut(s)	331, 592, 737, 826
PspGI	CCWGG	4 cut(s)	331, 592, 737, 826
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	590
PspXI	VCTCGAGB	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	872
RsaI	GTAC	2 cut(s)	193, 245
RsaNI	GTAC	2 cut(s)	192, 244
RseI	CAYNNNNRTG	2 cut(s)	71, 311
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	2 cut(s)	353, 513
Sau3AI	GATC	4 cut(s)	343, 766, 834, 965
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	4 cut(s)	333, 594, 739, 828
SfaNI	GCATC	3 cut(s)	244, 339, 561
SfcI	CTRYAG	1 cut(s)	864
Sfr274I	CTCGAG	1 cut(s)	218
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	71, 311
SmlI	CTYRAG	2 cut(s)	158, 218
SmoI	CTYRAG	2 cut(s)	158, 218
SpeI	ACTAGT	1 cut(s)	425
SphI	GCATGC	1 cut(s)	800
Sse9I	AATT	4 cut(s)	15, 26, 327, 500
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	3 cut(s)	426, 935, 957
StyD4I	CCNGG	4 cut(s)	331, 592, 737, 826
StyI	CCWWGG	2 cut(s)	279, 776
TaaI	ACNGT	2 cut(s)	868, 874
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	70, 219, 890
TasI	AATT	4 cut(s)	15, 26, 327, 500
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	860
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	1 cut(s)	792
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	352, 512
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	7 cut(s)	103, 276, 305, 375, 893, 938, 941
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	792
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	3 cut(s)	426, 935, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.