Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

1189450 .. 1196202

Gene Structure 6753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG018200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3246 bp

ATGTCTCCTCTCGCCGAGAACGACGAGCTTTCTTACTACGACGAACAAGACGACGACGACGACGACGATGACGACGACGGCTTCAACGCCGACATCGAGGCCCTCCGCCGCGCCTGTATGCTCACCGGCAAAGACCCCGACGACGTCATCGCCCAAAACGACGACGAAAACCCTAGCAGTAACCAAAACGACGACGTAGACCTCTCCTCGGCTCCCAATTCCGACTCCGATTTCGACGAGGACCTCGAGCTGCTCCGCAAAATCAAGAGCCAATTCTCCAACATTTCTCTCAAGCCTCTTTCGCTGAAGCCTCTCTGTACTTTGCTTCCGCCTTCTGCCTCCGACGAGGAGGAGGACGACTACCAGACGCTGCTCGCCGTTCGGAAACGTTTCGCCGCCTACGAGAACGATACTCAGGAAAAAAGTGCAGAGCAGATTGATCCTTCCTGCAAATCAGTCGAGGAAACTTGCAATGAAGTATCTGGAACTGATGCTCATGAAAGGTTTCGTACTCTGGTCACCGATAATGAAGAGGGACAGCCTTCCACTTCCATTGAGTGGGTTCAGTCAGATTCTTGTGAGCCAACTCTGTTGCCAACCAAAAGTTCAGGGTTCCCAAAGTCTGCACTGGCTTTTCTGGATGCTATTAATAAGAATAGGTCCTGTCAGAAGTTTCTTCGAAGTAAGCTAATACAAATCCAAGCGAAAATTGAGGAGAACAACAAACTGAAGCAGCGTGTCAAAATCCTTAGAGACTTTCAAGCTCATTGCAAAAGACGAACAGGAGAGGCGCTGTCCCAAAAGAAGGATCCTCGTGTCCAGTTAATTTTAACGAAAAAGCCAAGGGCTGATTCAAAGGCTCATGACAGAGCTATCTCAGCTATGTCTTATGGCCCAGAAGAAAATTCACATGTTGCCAACTACAGAAAGGCATCGACAAAATTTCCACTTTCATTAGATCGAAAAAATTGGTCAGAGGTAGAAAAGAAAGATCTTCAAAATGGAATAAGACAGCAATTTCAGGAAATGGTGCTTCAATCTTCCGTAGATGATTCAAGTTATTCTGAGACACCTCATGGAGACTCAAATGACATTGATAAAATTTTGGCTTCAATCAAGGATCTCGAAATTACCCCATATAGCATTAGAGAGTTCCTGCCTAAGGTTAACTGGGAGCAGTTGGCTTCCATGTATGTTCCTGGTCGCTCTGGTGGAGAATGTGAAGCAAGGTGGCTGAACTGGGAGGATCCCTTAATCAATCATGGACCATGGACAACAGATGAGGATAAGACAATTCTGTATCTTGTCCAGAAGAAGAATGGGGTCAATGATTGGAATAATATTGCAGAAGCAGTTGGGACTAACAGGACTCCATTTCAGTGCTTGTCACGCTACCAAAGGAGCCTAAATGCTTCTATACTGAAACGGGAGTGGACCAAGGATGAGGATGCAAAACTTGCTTCTGCTGTAGAAGCTTTTGGTGAGGGTAATTGGCAGTCTGTAGCTTCTGCTTTGAACGGACGAACTGGTACTCAATGCTCTAATAGATGGAAGAAATCACTTCATCCAACCAGGACAAGAGCAGGTAAGTGGACTCCAGAGGAAGACAAACGCCTGATAGTAGCTCAAATGCTTTTTGGGTCAAAAAGTTGGAATAAGACAGCTCAGTTTGTGCCAGGCCGAACTCAGGCACAATGCAGAGATAGATATGTCAACTCTTTAGAACCTTCTTTGAGGTGTGGTGAATGGACTGAAGAAGAGGACTCAAGGTTGATAGCAGCAATTGAAGAATATGGACATTGCTGGTCAAAAGTTGCTGCATGTGTGCCTCACCGGACTGATAATATGTGCTGGAGGAGATGGAAGTTGTTGTTTCCGGATGAAGTGCCCTTGCTCAGAGAAGAGAAAAGAATACGTAAGACTGCTCTCATCCGCAACTTTGTTGATCGGGAGAAAGAACGTCCAGCCCTTGGCCCTAATGATTTTCTTCTACAAGATGTTACCTCAATGAAAACTTTAACTTATCCTAGGAAGACGGGAGGATTAAGCCAAGTTCCAAAGAAGATTAAACCCAGGAGGCATAGAAACGATGCTCAACTTTGCTCTGAGGAAGAACCTGGGACAAGCAATTCTGAGGTTGAGACTTATGATGGGGAAGATGCCTCAAAGAAGAAGAAGAAGAAGAAAGTTCTTAAACAGCGTCAAAGAAGGCACAAAGACAATGAACCCACAGGAGACTGTGAGGCTGTTTTACCTGTACCAAAGAAGATTAGACCCAGGAGGAATAGAAACAACGGTCAAATTCCTGGGATAAGCAATTCTGAGGTTCGGACATGTGATGGGGATGATGGCCCGAAGAAGAAGAAAGTTCTTAAACAGCGTCACAGAAGGCACAAAGGCGCCGAACTAACAGGAGAGTGTAAGGCTATTGTACCTGTTAGTAATGAGGATGACACACACAAAGAACCCACAGAAATGTCTTGTTCAGATGCCCTGAAGAAGAAGAAAGTTCTTAAACATCGTCACAGAAAGCACAAAGGCACTGAACCAACAGGAGAGTGTAAGGCTATTGTACCTGTTAGTAATGAGGATGACGCACGCAAAGAACCCACAGAAATGTCTTGTTCAGATGCCCTGAAGAAGAAGAAAGTTCTTAAACATCGTCACAGAAAGCACATAGGCACTGAACCAACAGTAGAGTGTAAGGCTATTGTACCTATTAGTAATGAGGATGACGCACGCAAAGAACCCACAGCGATGTCTTATTCAGATCAAATCATAGGAACATCAGATGAAGATGATACTGTTTCTTATTATCTACATAAATCAAGGAAGAGAAAGCTTGAAGCTGATCTGGCTGTTATGCAACATGAGCCAGCCATAGCTTGCAATAAACCTGGTCGACGAAAATTAGTCAGAGGGCAAAAGCTTGGCCTCCAAGAACCAATGAGGGGAGTGTTGAGAATTTGTCCAGGAAGTGATCATGAGACTGATGATCCTGTTGTGGCTTCCACGGGGAAAAAGAATTCAAAAAAGAGGCATGCTCAAACTACCAAACGGCACGTCATTTGTAATGATCCCGATGCAGGAGATCTACCTAAACAAGAGGAGGTCACAATCAAATCTGGGAAGGAACAAGTGAGCGCTGGTGCAGACAGCGGCGATGATATAACACTTGCTTGTTTTCTTAATAGATTAAAGAAGCGACGTGAATCTGGCAGAGGAGATATTCAGATGCCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

1081

Amino Acids

122.62

Weight (kDa)

8.17

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	422 - 467	1.2e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	424 - 483	9.5e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	475 - 519	7.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	478 - 527	2.2e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	529 - 572	4.8e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	531 - 584	4.7e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	581 - 622	1.3e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	583 - 625	6.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	1574
AccB1I	GGYRCC	1 cut(s)	2399
AccB7I	CCANNNNNTGG	2 cut(s)	558, 1970
AccI	GTMKAC	2 cut(s)	198, 2902
AccII	CGCG	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	1876
AciI	CCGC	7 cut(s)	106, 109, 256, 329, 396, 1933, 3159
AclI	AACGTT	1 cut(s)	388
AclWI	GGATC	8 cut(s)	434, 803, 816, 1128, 1241, 1254, 2990, 3071
AcsI	RAATTY	6 cut(s)	904, 941, 1101, 2301, 2964, 3025
AcuI	CTGAAG	5 cut(s)	326, 749, 1773, 2516, 2657
AcyI	GRCGYC	2 cut(s)	144, 2400
AfaI	GTAC	7 cut(s)	319, 511, 1531, 2259, 2433, 2574, 2715
AfeI	AGCGCT	1 cut(s)	3145
AfiI	CCNNNNNNNGG	8 cut(s)	208, 558, 805, 1162, 1687, 1970, 2951, 3086
AflIII	ACRYGT	2 cut(s)	910, 2333
AjiI	CACGTC	2 cut(s)	3064, 3209
AjnI	CCWGG	9 cut(s)	1198, 1571, 1675, 2072, 2116, 2276, 2305, 2896, 2971
AjuI	GAANNNNNNNTTGG	4 cut(s)	589, 621, 835, 867
Alw26I	GTCTC	7 cut(s)	9, 747, 1061, 1074, 2135, 2229, 2981
AlwI	GGATC	8 cut(s)	434, 803, 816, 1128, 1241, 1254, 2990, 3071
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	1876
Aor51HI	AGCGCT	1 cut(s)	3145
AoxI	GGCC	6 cut(s)	99, 892, 1678, 1972, 2350, 2932
ApeKI	GCWGC	5 cut(s)	250, 370, 733, 1778, 1817
ApoI	RAATTY	6 cut(s)	904, 941, 1101, 2301, 2964, 3025
ArsI	GACNNNNNNTTYG	4 cut(s)	215, 247, 3048, 3080
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	2 cut(s)	389, 504
AspA2I	CCTAGG	1 cut(s)	2027
AspLEI	GCGC	4 cut(s)	113, 793, 2402, 3146
AspS9I	GGNCC	8 cut(s)	100, 241, 660, 893, 1265, 1434, 1973, 2351
AsuHPI	GGTGA	5 cut(s)	115, 511, 1493, 1754, 1823
AsuII	TTCGAA	1 cut(s)	679
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	4 cut(s)	241, 660, 1265, 1434
AvrII	CCTAGG	1 cut(s)	2027
AxyI	CCTNAGG	1 cut(s)	1161
BaeGI	GKGCMC	1 cut(s)	1890
BamHI	GGATCC	2 cut(s)	808, 1246
BanI	GGYRCC	1 cut(s)	2399
BauI	CACGAG	1 cut(s)	813
BbsI	GAAGAC	2 cut(s)	1611, 2039
BbvI	GCAGC	5 cut(s)	237, 357, 745, 1790, 1804
BccI	CCATC	5 cut(s)	1542, 1854, 2144, 2333, 2342
BceAI	ACGGC	3 cut(s)	94, 362, 3074
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
BclI	TGATCA	1 cut(s)	2980
BcoDI	GTCTC	7 cut(s)	9, 747, 1061, 1074, 2135, 2229, 2981
BfaI	CTAG	2 cut(s)	174, 2028
BfmI	CTRYAG	3 cut(s)	922, 1467, 1500
BfoI	RGCGCY	3 cut(s)	794, 2403, 3147
BfuAI	ACCTGC	1 cut(s)	1574
BglII	AGATCT	2 cut(s)	991, 3091
BisI	GCNGC	8 cut(s)	109, 251, 371, 396, 734, 1779, 1818, 3160
BlnI	CCTAGG	1 cut(s)	2027
BlsI	GCNGC	8 cut(s)	110, 252, 372, 397, 735, 1780, 1819, 3161
Bme1390I	CCNGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
Bme18I	GGWCC	4 cut(s)	241, 660, 1265, 1434
BmeT110I	CYCGRG	1 cut(s)	245
BmgBI	CACGTC	2 cut(s)	3064, 3209
BmgT120I	GGNCC	8 cut(s)	100, 241, 660, 893, 1265, 1434, 1973, 2351
BmiI	GGNNCC	6 cut(s)	213, 614, 810, 1248, 1403, 2401
BmrFI	CCNGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
BmrI	ACTGGG	2 cut(s)	1180, 1249
BmuI	ACTGGG	2 cut(s)	1180, 1249
BpiI	GAAGAC	2 cut(s)	1611, 2039
BplI	GAGNNNNNCTC	2 cut(s)	3028, 3060
BpmI	CTGGAG	2 cut(s)	1581, 1873
Bpu14I	TTCGAA	1 cut(s)	679
BpuEI	CTTGAG	2 cut(s)	275, 1750
BsaAI	YACGTR	1 cut(s)	1916
BsaHI	GRCGYC	2 cut(s)	144, 2400
BsaWI	WCCGGW	2 cut(s)	1833, 1876
Bsc4I	CCNNNNNNNGG	8 cut(s)	208, 558, 805, 1162, 1687, 1970, 2951, 3086
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	5 cut(s)	633, 820, 1175, 1244, 1531
Bse21I	CCTNAGG	1 cut(s)	1161
Bse3DI	GCAATG	3 cut(s)	478, 766, 1798
BseAI	TCCGGA	1 cut(s)	1876
BseBI	CCWGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
BseLI	CCNNNNNNNGG	8 cut(s)	208, 558, 805, 1162, 1687, 1970, 2951, 3086
BseMI	GCAATG	3 cut(s)	478, 766, 1798
BseMII	CTCAG	9 cut(s)	428, 891, 1056, 1679, 1700, 1909, 2097, 2124, 2313
BseNI	ACTGG	5 cut(s)	633, 820, 1175, 1244, 1531
BseRI	GAGGAG	7 cut(s)	196, 362, 365, 728, 1870, 3122, 3237
BseSI	GKGCMC	1 cut(s)	1890
BseXI	GCAGC	5 cut(s)	237, 357, 745, 1790, 1804
BsgI	GTGCAG	3 cut(s)	447, 609, 3171
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	6 cut(s)	101, 894, 1680, 1974, 2352, 2934
BshNI	GGYRCC	1 cut(s)	2399
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	126, 1834, 1877
BslFI	GGGAC	4 cut(s)	549, 781, 1372, 2134
BslI	CCNNNNNNNGG	8 cut(s)	208, 558, 805, 1162, 1687, 1970, 2951, 3086
BsmAI	GTCTC	7 cut(s)	9, 747, 1061, 1074, 2135, 2229, 2981
BsmFI	GGGAC	4 cut(s)	549, 781, 1372, 2134
BsnI	GGCC	6 cut(s)	101, 894, 1680, 1974, 2352, 2934
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	1890
Bsp13I	TCCGGA	1 cut(s)	1876
Bsp19I	CCATGG	1 cut(s)	1268
BspACI	CCGC	7 cut(s)	106, 109, 256, 329, 396, 1933, 3159
BspANI	GGCC	6 cut(s)	101, 894, 1680, 1974, 2352, 2934
BspCNI	CTCAG	9 cut(s)	427, 890, 1057, 1678, 1699, 1908, 2098, 2125, 2314
BspEI	TCCGGA	1 cut(s)	1876
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	3 cut(s)	496, 862, 2983
BspLI	GGNNCC	6 cut(s)	213, 614, 810, 1248, 1403, 2401
BspMI	ACCTGC	1 cut(s)	1574
BspPI	GGATC	8 cut(s)	434, 803, 816, 1128, 1241, 1254, 2990, 3071
BspT104I	TTCGAA	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	2399
BsrDI	GCAATG	3 cut(s)	478, 766, 1798
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	5 cut(s)	633, 820, 1175, 1244, 1531
BssAI	RCCGGY	1 cut(s)	125
BssNI	GRCGYC	2 cut(s)	144, 2400
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	5 cut(s)	842, 1268, 1437, 1969, 2027
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
Bst4CI	ACNGT	4 cut(s)	2240, 2297, 2695, 2806
Bst6I	CTCTTC	4 cut(s)	525, 1752, 1896, 2828
BstACI	GRCGYC	2 cut(s)	144, 2400
BstAPI	GCANNNNNTGC	1 cut(s)	1457
BstBAI	YACGTR	1 cut(s)	1916
BstBI	TTCGAA	1 cut(s)	679
BstC8I	GCNNGC	6 cut(s)	375, 2599, 2740, 2877, 2887, 3042
BstDSI	CCRYGG	2 cut(s)	1268, 3012
BstEII	GGTNACC	1 cut(s)	517
BstENI	CCTNNNNNAGG	1 cut(s)	1160
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	3 cut(s)	794, 2403, 3147
BstHHI	GCGC	4 cut(s)	113, 793, 2402, 3146
BstMAI	GTCTC	7 cut(s)	9, 747, 1061, 1074, 2135, 2229, 2981
BstMWI	GCNNNNNNNGC	7 cut(s)	301, 878, 1389, 1457, 1472, 2855, 2872
BstNI	CCWGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
BstNSI	RCATGY	4 cut(s)	914, 1824, 2337, 3044
BstPI	GGTNACC	1 cut(s)	517
BstSCI	CCNGG	9 cut(s)	1198, 1571, 1675, 2072, 2116, 2276, 2305, 2896, 2971
BstSFI	CTRYAG	3 cut(s)	922, 1467, 1500
BstSLI	GKGCMC	1 cut(s)	1890
BstSNI	TACGTA	1 cut(s)	1916
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	5 cut(s)	237, 357, 745, 1790, 1804
BstV2I	GAAGAC	2 cut(s)	1611, 2039
BstX2I	RGATCY	5 cut(s)	808, 991, 1120, 1246, 3091
BstYI	RGATCY	5 cut(s)	808, 991, 1120, 1246, 3091
Bsu36I	CCTNAGG	1 cut(s)	1161
BsuRI	GGCC	6 cut(s)	101, 894, 1680, 1974, 2352, 2934
BtgI	CCRYGG	2 cut(s)	1268, 3012
BtgZI	GCGATG	3 cut(s)	133, 2771, 3177
BtrI	CACGTC	2 cut(s)	3064, 3209
BtsIMutI	CAGTG	4 cut(s)	626, 1385, 2541, 2682
BveI	ACCTGC	1 cut(s)	1574
Cac8I	GCNNGC	6 cut(s)	375, 2599, 2740, 2877, 2887, 3042
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	3 cut(s)	496, 862, 2983
CfoI	GCGC	4 cut(s)	113, 793, 2402, 3146
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	8 cut(s)	100, 241, 660, 893, 1265, 1434, 1973, 2351
CseI	GACGC	5 cut(s)	376, 2189, 2369, 2603, 2744
CsiI	ACCWGGT	1 cut(s)	2896
Csp6I	GTAC	7 cut(s)	318, 510, 1530, 2258, 2432, 2573, 2714
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviQI	GTAC	7 cut(s)	318, 510, 1530, 2258, 2432, 2573, 2714
DinI	GGCGCC	1 cut(s)	2401
Eam1104I	CTCTTC	4 cut(s)	525, 1752, 1896, 2828
EarI	CTCTTC	4 cut(s)	525, 1752, 1896, 2828
EciI	GGCGGA	2 cut(s)	95, 318
Eco105I	TACGTA	1 cut(s)	1916
Eco130I	CCWWGG	5 cut(s)	842, 1268, 1437, 1969, 2027
Eco47I	GGWCC	4 cut(s)	241, 660, 1265, 1434
Eco47III	AGCGCT	1 cut(s)	3145
Eco57I	CTGAAG	5 cut(s)	326, 749, 1773, 2516, 2657
Eco81I	CCTNAGG	1 cut(s)	1161
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	517
EcoNI	CCTNNNNNAGG	1 cut(s)	1160
EcoO109I	RGGNCCY	3 cut(s)	100, 241, 660
EcoO65I	GGTNACC	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	3025
EcoRII	CCWGG	9 cut(s)	1198, 1571, 1675, 2072, 2116, 2276, 2305, 2896, 2971
EcoT14I	CCWWGG	5 cut(s)	842, 1268, 1437, 1969, 2027
EgeI	GGCGCC	1 cut(s)	2401
EheI	GGCGCC	1 cut(s)	2401
ErhI	CCWWGG	5 cut(s)	842, 1268, 1437, 1969, 2027
FaqI	GGGAC	4 cut(s)	549, 781, 1372, 2134
FbaI	TGATCA	1 cut(s)	2980
FblI	GTMKAC	2 cut(s)	198, 2902
Fnu4HI	GCNGC	8 cut(s)	109, 251, 371, 396, 734, 1779, 1818, 3160
Fsp4HI	GCNGC	8 cut(s)	109, 251, 371, 396, 734, 1779, 1818, 3160
FspBI	CTAG	2 cut(s)	174, 2028
GlaI	GCGC	4 cut(s)	112, 792, 2401, 3145
GluI	GCNGC	8 cut(s)	109, 251, 371, 396, 734, 1779, 1818, 3160
GsuI	CTGGAG	2 cut(s)	1581, 1873
HaeII	RGCGCY	3 cut(s)	794, 2403, 3147
HaeIII	GGCC	6 cut(s)	101, 894, 1680, 1974, 2352, 2934
HapII	CCGG	3 cut(s)	126, 1834, 1877
HgaI	GACGC	5 cut(s)	376, 2189, 2369, 2603, 2744
HhaI	GCGC	4 cut(s)	113, 793, 2402, 3146
Hin1I	GRCGYC	2 cut(s)	144, 2400
Hin6I	GCGC	4 cut(s)	111, 791, 2400, 3144
HinP1I	GCGC	4 cut(s)	111, 791, 2400, 3144
HincII	GTYRAC	3 cut(s)	1168, 1714, 2903
HindII	GTYRAC	3 cut(s)	1168, 1714, 2903
HindIII	AAGCTT	3 cut(s)	1473, 2840, 2927
HinfI	GANTC	9 cut(s)	224, 572, 851, 1052, 1082, 1369, 1594, 1763, 3212
HpaI	GTTAAC	1 cut(s)	1168
HpaII	CCGG	3 cut(s)	126, 1834, 1877
HphI	GGTGA	5 cut(s)	115, 511, 1493, 1754, 1823
Hpy166II	GTNNAC	6 cut(s)	199, 1168, 1434, 1593, 1714, 2903
Hpy8I	GTNNAC	6 cut(s)	199, 1168, 1434, 1593, 1714, 2903
HpyAV	CCTTC	8 cut(s)	342, 453, 552, 799, 1737, 2202, 2382, 3124
HpyCH4III	ACNGT	4 cut(s)	2240, 2297, 2695, 2806
HpyCH4IV	ACGT	7 cut(s)	144, 195, 388, 1915, 1960, 3063, 3208
HpyF10VI	GCNNNNNNNGC	7 cut(s)	301, 878, 1389, 1457, 1472, 2855, 2872
HpySE526I	ACGT	7 cut(s)	144, 195, 388, 1915, 1960, 3063, 3208
Hsp92I	GRCGYC	2 cut(s)	144, 2400
HspAI	GCGC	4 cut(s)	111, 791, 2400, 3144
KasI	GGCGCC	1 cut(s)	2399
Kpn2I	TCCGGA	1 cut(s)	1876
Ksp22I	TGATCA	1 cut(s)	2980
KspAI	GTTAAC	1 cut(s)	1168
LmnI	GCTCC	4 cut(s)	217, 258, 1174, 1401
Lsp1109I	GCAGC	5 cut(s)	237, 357, 745, 1790, 1804
MabI	ACCWGGT	1 cut(s)	2896
MaeI	CTAG	2 cut(s)	174, 2028
MaeII	ACGT	7 cut(s)	144, 195, 388, 1915, 1960, 3063, 3208
MaeIII	GTNAC	8 cut(s)	179, 517, 1386, 1999, 2381, 2522, 2663, 3112
MfeI	CAATTG	1 cut(s)	1782
MflI	RGATCY	5 cut(s)	808, 991, 1120, 1246, 3091
MhlI	GDGCHC	1 cut(s)	1890
Mly113I	GGCGCC	1 cut(s)	2400
MlyI	GAGTC	5 cut(s)	218, 1076, 1363, 1588, 1757
MmeI	TCCRAC	5 cut(s)	246, 303, 366, 1592, 1631
MroI	TCCGGA	1 cut(s)	1876
MroXI	GAANNNNTTC	2 cut(s)	389, 504
MslI	CAYNNNNRTG	4 cut(s)	1378, 2474, 2615, 2756
MspA1I	CMGCKG	1 cut(s)	3159
MspI	CCGG	3 cut(s)	126, 1834, 1877
MspR9I	CCNGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
MunI	CAATTG	1 cut(s)	1782
MvaI	CCWGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	7 cut(s)	301, 878, 1389, 1457, 1472, 2855, 2872
NarI	GGCGCC	1 cut(s)	2400
NcoI	CCATGG	1 cut(s)	1268
NlaIV	GGNNCC	6 cut(s)	213, 614, 810, 1248, 1403, 2401
NmeAIII	GCCGAG	2 cut(s)	40, 188
NmuCI	GTSAC	6 cut(s)	517, 1386, 2381, 2522, 2663, 3112
NspI	RCATGY	4 cut(s)	914, 1824, 2337, 3044
NspV	TTCGAA	1 cut(s)	679
PaeI	GCATGC	1 cut(s)	3044
PaeR7I	CTCGAG	1 cut(s)	245
PagI	TCATGA	3 cut(s)	496, 862, 2983
PciI	ACATGT	2 cut(s)	910, 2333
PdmI	GAANNNNTTC	2 cut(s)	389, 504
PfeI	GAWTC	4 cut(s)	572, 851, 1052, 3212
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	2 cut(s)	558, 1970
PfoI	TCCNGGA	1 cut(s)	2971
PkrI	GCNGC	8 cut(s)	110, 252, 372, 397, 735, 1780, 1819, 3161
PleI	GAGTC	5 cut(s)	218, 1076, 1363, 1588, 1757
PluTI	GGCGCC	1 cut(s)	2403
PpsI	GAGTC	5 cut(s)	218, 1076, 1363, 1588, 1757
Ppu21I	YACGTR	1 cut(s)	1916
PpuMI	RGGWCCY	2 cut(s)	241, 660
PscI	ACATGT	2 cut(s)	910, 2333
PshBI	ATTAAT	1 cut(s)	648
Psp1406I	AACGTT	1 cut(s)	388
Psp5II	RGGWCCY	2 cut(s)	241, 660
Psp6I	CCWGG	9 cut(s)	1198, 1571, 1675, 2072, 2116, 2276, 2305, 2896, 2971
PspEI	GGTNACC	1 cut(s)	517
PspGI	CCWGG	9 cut(s)	1198, 1571, 1675, 2072, 2116, 2276, 2305, 2896, 2971
PspN4I	GGNNCC	6 cut(s)	213, 614, 810, 1248, 1403, 2401
PspPI	GGNCC	8 cut(s)	100, 241, 660, 893, 1265, 1434, 1973, 2351
PspPPI	RGGWCCY	2 cut(s)	241, 660
PspXI	VCTCGAGB	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	5 cut(s)	808, 991, 1120, 1246, 3091
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	7 cut(s)	319, 511, 1531, 2259, 2433, 2574, 2715
RsaNI	GTAC	7 cut(s)	318, 510, 1530, 2258, 2432, 2573, 2714
RseI	CAYNNNNRTG	4 cut(s)	1378, 2474, 2615, 2756
SalI	GTCGAC	1 cut(s)	2901
SatI	GCNGC	8 cut(s)	109, 251, 371, 396, 734, 1779, 1818, 3160
Sau96I	GGNCC	8 cut(s)	100, 241, 660, 893, 1265, 1434, 1973, 2351
SchI	GAGTC	5 cut(s)	218, 1076, 1363, 1588, 1757
ScrFI	CCNGG	9 cut(s)	1200, 1573, 1677, 2074, 2118, 2278, 2307, 2898, 2973
SduI	GDGCHC	1 cut(s)	1890
SexAI	ACCWGGT	1 cut(s)	2896
SfcI	CTRYAG	3 cut(s)	922, 1467, 1500
SfoI	GGCGCC	1 cut(s)	2401
Sfr274I	CTCGAG	1 cut(s)	245
SfuI	TTCGAA	1 cut(s)	679
SinI	GGWCC	4 cut(s)	241, 660, 1265, 1434
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	4 cut(s)	1378, 2474, 2615, 2756
SmlI	CTYRAG	3 cut(s)	245, 290, 1765
SmoI	CTYRAG	3 cut(s)	245, 290, 1765
SnaBI	TACGTA	1 cut(s)	1916
SphI	GCATGC	1 cut(s)	3044
SsiI	CCGC	7 cut(s)	106, 109, 256, 329, 396, 1933, 3159
SspDI	GGCGCC	1 cut(s)	2399
SspI	AATATT	1 cut(s)	1342
SspMI	CTAG	2 cut(s)	174, 2028
StyD4I	CCNGG	9 cut(s)	1198, 1571, 1675, 2072, 2116, 2276, 2305, 2896, 2971
StyI	CCWWGG	5 cut(s)	842, 1268, 1437, 1969, 2027
TaaI	ACNGT	4 cut(s)	2240, 2297, 2695, 2806
TaiI	ACGT	7 cut(s)	147, 198, 391, 1918, 1963, 3066, 3211
TaqI	TCGA	9 cut(s)	96, 234, 246, 459, 679, 935, 961, 1125, 2902
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	3 cut(s)	111, 398, 3162
TfiI	GAWTC	4 cut(s)	572, 851, 1052, 3212
TscAI	CASTG	4 cut(s)	633, 1385, 2548, 2689
TseFI	GTSAC	6 cut(s)	517, 1386, 2381, 2522, 2663, 3112
TseI	GCWGC	5 cut(s)	250, 370, 733, 1778, 1817
Tsp45I	GTSAC	6 cut(s)	517, 1386, 2381, 2522, 2663, 3112
TspDTI	ATGAA	9 cut(s)	489, 513, 543, 942, 1553, 1896, 2024, 2238, 2808
TspGWI	ACGGA	2 cut(s)	1033, 1533
TspRI	CASTG	4 cut(s)	633, 1385, 2548, 2689
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	2 cut(s)	558, 1970
VpaK11BI	GGWCC	4 cut(s)	241, 660, 1265, 1434
VspI	ATTAAT	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	1160
XapI	RAATTY	6 cut(s)	904, 941, 1101, 2301, 2964, 3025
XceI	RCATGY	4 cut(s)	914, 1824, 2337, 3044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1316
XhoI	CTCGAG	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	2027
XmiI	GTMKAC	2 cut(s)	198, 2902
XmnI	GAANNNNTTC	2 cut(s)	389, 504
XspI	CTAG	2 cut(s)	174, 2028
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.