Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

1524978 .. 1532112

Gene Structure 7135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG018800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

ATGTCTCCTCTCGCCGAGAACGACGAGCTTTCTTACTACGACGACGACGATGATGACGACGGCTTCAACGCCGACATCGAGGCCCTCCGCCGCGCCTGTATGCTCACCGGCAAAGACCCCGACGACATCACCACCAAAAATGACGACGAAAACCCTAGCAGCAACCAAAACGACGACGTAGACCTCTCCTCGGCTCCCAATTCCGACTCCGATTTCGACGAGGACCTCGAGCTGCTCCGCAAAATCAAGAGCCAATTCTCCAACACTTCTCTCAAGCCTCTTTCGCTGAAGCCTCTCTGTACTTTGCTTCCGCCTTCTGCCTCCGACGAGGAGGAGGACGACTACCAGACGCTGCTCGCCGTTCGGAAACGTTTCGCCGCCTACGAGAACGATACTCAGGAAAAAAGTGCAGAGCAGATTGATCCTTCCTGCAAATCAGTCGAGGAAACTTGCAATGAAGTATCTGGAACTGATGCTCATGAAAGGTTTCTTACTCTGGTCACCGATAATGAAGAGGGACAGCCTTCCACTTCCATTGAGTGGGTTCAGTCAGATTCTTGTGAGCCAACTCTGTTGCCAACCAAAAGTTCAGGGTTCCCAAAGTCTGCACTGGCTTTTCTGGATGCTATTAATAAGAATAGGTCCTGTCAGAAGTTTCTTCGAAGTAAGCTAATACAAATCCAAGCGAAAATTGAGGAGAACAACAAACTGAAGCAGCGTGTCAAAATCCTTAGAGACTTTCAAGCTCATTGCAAAAGACGAACAGGAGAGGCGCTGTCCCAAAAGAAGGATCCTCGTGTCCAGTTAATTTTAACGAAAAAGCCAAGGGCTGATTCAAAGGCTCATGACAGAGCTATCTCAGCTATGTCTTATGGCCCAGAAGAAAATTCACATGTTGCCAACTACAGAAAGGCATCGACAAAATTTCCACTTTCATTAGATCGAAAAAATTGGTCAGAGGTAGAAAAGAAAGATCTTCAAAATGGAATAAGACAGCAATTTCAGGAAATGGTGCTTCAATCTTCCGTAGATGATTCAAGTTATTCTGAGACACCTGATGGAGACTCGAATGACATTGATAAAATTTTGGCTTCAATCAAGGATCTCGAAATTACCCCATATAGCATTAGAGAGTTCCTGCCTAAGGTTAACTGGGAGCAGTTGGCTTCCATGTATGTTCCTGGTCGCTCTGGTGGAGAATGTGAAGCAAGGTGGTTGAACTGGGAGGATCCCTTAATCAGTCATGGACCGTGGACAACAGATGAGGATAAGACGATTCTGTATCTTGTCCAGAAGAAGAATGGGGTCAATGATTGGAATAATATTGCAGAAGCAGTGGGGACTAACAGGACTCCATTTCAGTGCTTGGCACGCTACCAAAGGAGCCTAAATGCTTCTATACTGAAACGGGAGTGGACCAAGGATGAGGATGCAAAACTTGCTTCTGCTGTAGAAGCTTTTGGTGAGGGTAATTGGCAGTCTGTAGCTTCTGCTTTGAACGGACGAACTGGTACTCAATGCTCTAATAGATGGAAGAAATCACTTCATCCAACCAGGACAAGAGCAGGTAAGTGGACTCCAGAGGAAGACAAACGCCTGATAGTAGCTCAAATGCTTTTTGGGTCAAAAAGTTGGAATAAGACAGCTCAGTTTGTGCCAGGCCGAACTCAGGCACAATGCAGAGATAGATATGTCAACTCTTTAGAACCTTCTTTGAGGTGTGGTGAATGGACTGAAGAAGAGGACTCAAGGTTGATAGCAGCAATTGAAGAATATGGACATTGCTGGTCAAAAGTTGCTGCATGTGTGCCTCACCGGACTGATAATATGTGCTGGAGGAGATGGAAGGTGTTGTTTCCGGATGAAGTGCCCTTGCTCAGAGAAGAGAAAAGAATACGTAAGACTGCTCTCATCCGCAACTTTGTTGATCGGGAGAAAGAACGTCCAGCCCTTGGCCCTAATGATTTTCTTCTACAAGACGTTACCTCAATGAAAACTTTAACTTATCCTAGGAAGACGGGAGGATTAAGCCAAGTTCCAAAGAAGATTAAACCCAGGAGGCATAGAAACGATGCTCAACTTTGCTCTGAGGAAGAACCTGGGACAAGCAATTCTGAGGTTGAGACTTATGATGGGGAAGATGCCTCAAAGAAGAAGAAGAAGAAGAAAGTTCTTAAACAGTGTCAAAGAAGGCACAAAGACAATGAACCCACAGGAGACTGTGCGGCTGTTGTGCCTGTACCAAAGAAGATTAGACCCAGGAGGAATAGAAACAACGGTCAAATTCCTGGGATAAGCAATTCTGAGGTACGGACATGTGATGGGGATGATGGCCCGAAGAAGGAGAAAGTTCTTAAACAGCGTCACAGAAGGCACAAAGGCACTGAACTAACAGGAGAGTGTACAGCTATTGTACCTGTTAGTAATGAGGATGACGCACACAAAGAACCCACAGAAATGTCTTGTTCAGATGCCCTGAAGAAGAAGAAAGTTCTTAAACATCGTCACAGAAAGCACAGAGGCACTGAACCAACAGGAGAGTGTAAGGCTATTGTACCTGTTAGTAATGAGGATGACGCGCGCAAAGAACCCACAGCGATGTCTTATTCAGATCAAATCATAGGAACATCAGATGAAGATGATACTGTTTCTTTCTATCTACATAAATCAAGGAAGAGAAAGCTTGAAGCTGGTCGACGAAAATTAGTCAGAGGGCAAAAGCTTGGCCTCCAAGAACCAATGAGGGGAGTGTTGAGAATTTGTCCAGGAAGTGATCATGAGACTGATGATCCTGTTGTGGCTTCCACGGGGAAAAAGAATACAAAGAAGAGGCATGCTCAAACTACCAAACGGCACGTCATTTGTAATGATCCCGATGCAGGAGATCTACCTAAACAAGAGGAGGTCACAATCAAATCTGGGAAGGAACAAGTGAGCGCTGGTGCAGACAGCGGCGATGATATAACACTTGCCTGTTTTCTTAATAGATTAAAGAAGCGACGTGAATCTGGCAGAGGAGATATTCAGATGCCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

1012

Amino Acids

114.62

Weight (kDa)

8.11

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	416 - 461	4.8e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	418 - 477	1e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	469 - 513	6.7e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	472 - 521	2e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	523 - 566	4.4e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	525 - 581	1.2e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	575 - 616	1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	577 - 620	2.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1556
AccB7I	CCANNNNNTGG	2 cut(s)	540, 1952
AccI	GTMKAC	2 cut(s)	180, 2695
AccII	CGCG	3 cut(s)	93, 2579, 2581
AccIII	TCCGGA	1 cut(s)	1858
AciI	CCGC	8 cut(s)	88, 91, 238, 311, 378, 1915, 2225, 2952
AclI	AACGTT	1 cut(s)	370
AclWI	GGATC	8 cut(s)	416, 785, 798, 1110, 1223, 1236, 2783, 2864
AcsI	RAATTY	5 cut(s)	886, 923, 1083, 2283, 2757
AcuI	CTGAAG	4 cut(s)	308, 731, 1755, 2498
AfaI	GTAC	7 cut(s)	301, 1513, 2241, 2310, 2404, 2415, 2556
AfeI	AGCGCT	1 cut(s)	2938
AfiI	CCNNNNNNNGG	9 cut(s)	190, 540, 787, 1144, 1669, 1952, 2341, 2744, 2879
AflIII	ACRYGT	2 cut(s)	892, 2315
AjiI	CACGTC	2 cut(s)	2857, 3002
AjnI	CCWGG	8 cut(s)	1180, 1553, 1657, 2054, 2098, 2258, 2287, 2764
AjuI	GAANNNNNNNTTGG	4 cut(s)	571, 603, 817, 849
Alw26I	GTCTC	7 cut(s)	9, 729, 1043, 1056, 2117, 2211, 2774
AlwI	GGATC	8 cut(s)	416, 785, 798, 1110, 1223, 1236, 2783, 2864
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	1858
Aor51HI	AGCGCT	1 cut(s)	2938
AoxI	GGCC	6 cut(s)	81, 874, 1660, 1954, 2332, 2725
ApeKI	GCWGC	6 cut(s)	159, 232, 352, 715, 1760, 1799
ApoI	RAATTY	5 cut(s)	886, 923, 1083, 2283, 2757
ArsI	GACNNNNNNTTYG	4 cut(s)	197, 229, 2841, 2873
AseI	ATTAAT	1 cut(s)	630
Asp700I	GAANNNNTTC	2 cut(s)	371, 486
AspA2I	CCTAGG	1 cut(s)	2009
AspLEI	GCGC	5 cut(s)	95, 775, 2581, 2583, 2939
AspS9I	GGNCC	8 cut(s)	82, 223, 642, 875, 1247, 1416, 1955, 2333
AsuHPI	GGTGA	6 cut(s)	97, 121, 493, 1475, 1736, 1805
AsuII	TTCGAA	1 cut(s)	661
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	4 cut(s)	223, 642, 1247, 1416
AvrII	CCTAGG	1 cut(s)	2009
AxyI	CCTNAGG	1 cut(s)	1143
BaeGI	GKGCMC	1 cut(s)	1872
BamHI	GGATCC	2 cut(s)	790, 1228
BauI	CACGAG	1 cut(s)	795
BbsI	GAAGAC	2 cut(s)	1593, 2021
BbvI	GCAGC	6 cut(s)	171, 219, 339, 727, 1772, 1786
BccI	CCATC	6 cut(s)	1052, 1524, 1836, 2126, 2315, 2324
BceAI	ACGGC	3 cut(s)	76, 344, 2867
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
BclI	TGATCA	1 cut(s)	2773
BcoDI	GTCTC	7 cut(s)	9, 729, 1043, 1056, 2117, 2211, 2774
BfaI	CTAG	2 cut(s)	156, 2010
BfmI	CTRYAG	3 cut(s)	904, 1449, 1482
BfoI	RGCGCY	2 cut(s)	776, 2940
BfuAI	ACCTGC	1 cut(s)	1556
BglII	AGATCT	2 cut(s)	973, 2884
BlnI	CCTAGG	1 cut(s)	2009
Bme1390I	CCNGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
Bme18I	GGWCC	4 cut(s)	223, 642, 1247, 1416
BmeT110I	CYCGRG	1 cut(s)	227
BmgBI	CACGTC	2 cut(s)	2857, 3002
BmgT120I	GGNCC	8 cut(s)	82, 223, 642, 875, 1247, 1416, 1955, 2333
BmiI	GGNNCC	5 cut(s)	195, 596, 792, 1230, 1385
BmrFI	CCNGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
BmrI	ACTGGG	2 cut(s)	1162, 1231
BmsI	GCATC	9 cut(s)	463, 613, 923, 1420, 2062, 2131, 2461, 2866, 3018
BmuI	ACTGGG	2 cut(s)	1162, 1231
BpiI	GAAGAC	2 cut(s)	1593, 2021
BplI	GAGNNNNNCTC	2 cut(s)	2821, 2853
BpmI	CTGGAG	2 cut(s)	1563, 1855
Bpu14I	TTCGAA	1 cut(s)	661
BpuEI	CTTGAG	2 cut(s)	257, 1732
BsaAI	YACGTR	1 cut(s)	1898
BsaWI	WCCGGW	2 cut(s)	1815, 1858
Bsc4I	CCNNNNNNNGG	9 cut(s)	190, 540, 787, 1144, 1669, 1952, 2341, 2744, 2879
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	5 cut(s)	615, 802, 1157, 1226, 1513
Bse21I	CCTNAGG	1 cut(s)	1143
Bse3DI	GCAATG	3 cut(s)	460, 748, 1780
BseAI	TCCGGA	1 cut(s)	1858
BseBI	CCWGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
BseGI	GGATG	9 cut(s)	628, 1429, 1435, 1546, 1867, 1911, 2332, 2437, 2578
BseLI	CCNNNNNNNGG	9 cut(s)	190, 540, 787, 1144, 1669, 1952, 2341, 2744, 2879
BseMI	GCAATG	3 cut(s)	460, 748, 1780
BseMII	CTCAG	9 cut(s)	410, 873, 1038, 1661, 1682, 1891, 2079, 2106, 2295
BseNI	ACTGG	5 cut(s)	615, 802, 1157, 1226, 1513
BsePI	GCGCGC	1 cut(s)	2579
BseRI	GAGGAG	7 cut(s)	178, 344, 347, 710, 1852, 2915, 3030
BseSI	GKGCMC	1 cut(s)	1872
BseXI	GCAGC	6 cut(s)	171, 219, 339, 727, 1772, 1786
BsgI	GTGCAG	3 cut(s)	429, 591, 2964
Bsh1236I	CGCG	3 cut(s)	93, 2579, 2581
BshFI	GGCC	6 cut(s)	83, 876, 1662, 1956, 2334, 2727
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	108, 1816, 1859
BslFI	GGGAC	4 cut(s)	531, 763, 1354, 2116
BslI	CCNNNNNNNGG	9 cut(s)	190, 540, 787, 1144, 1669, 1952, 2341, 2744, 2879
BsmAI	GTCTC	7 cut(s)	9, 729, 1043, 1056, 2117, 2211, 2774
BsmFI	GGGAC	4 cut(s)	531, 763, 1354, 2116
BsnI	GGCC	6 cut(s)	83, 876, 1662, 1956, 2334, 2727
BsoBI	CYCGRG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	661
Bsp1286I	GDGCHC	1 cut(s)	1872
Bsp13I	TCCGGA	1 cut(s)	1858
Bsp1407I	TGTACA	1 cut(s)	2402
BspACI	CCGC	8 cut(s)	88, 91, 238, 311, 378, 1915, 2225, 2952
BspANI	GGCC	6 cut(s)	83, 876, 1662, 1956, 2334, 2727
BspCNI	CTCAG	9 cut(s)	409, 872, 1039, 1660, 1681, 1890, 2080, 2107, 2296
BspEI	TCCGGA	1 cut(s)	1858
BspFNI	CGCG	3 cut(s)	93, 2579, 2581
BspHI	TCATGA	3 cut(s)	478, 844, 2776
BspLI	GGNNCC	5 cut(s)	195, 596, 792, 1230, 1385
BspMI	ACCTGC	1 cut(s)	1556
BspPI	GGATC	8 cut(s)	416, 785, 798, 1110, 1223, 1236, 2783, 2864
BspT104I	TTCGAA	1 cut(s)	661
BsrDI	GCAATG	3 cut(s)	460, 748, 1780
BsrFI	RCCGGY	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	2402
BsrI	ACTGG	5 cut(s)	615, 802, 1157, 1226, 1513
BssAI	RCCGGY	1 cut(s)	107
BssHII	GCGCGC	1 cut(s)	2579
BssSI	CACGAG	1 cut(s)	795
BssT1I	CCWWGG	4 cut(s)	824, 1419, 1951, 2009
Bst2BI	CACGAG	1 cut(s)	795
Bst2UI	CCWGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
Bst4CI	ACNGT	5 cut(s)	1251, 2181, 2222, 2279, 2647
Bst6I	CTCTTC	5 cut(s)	507, 1734, 1878, 2669, 2822
BstAPI	GCANNNNNTGC	1 cut(s)	1439
BstAUI	TGTACA	1 cut(s)	2402
BstBAI	YACGTR	1 cut(s)	1898
BstBI	TTCGAA	1 cut(s)	661
BstC8I	GCNNGC	4 cut(s)	357, 1372, 2581, 2835
BstDSI	CCRYGG	2 cut(s)	1250, 2805
BstEII	GGTNACC	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	1142
BstF5I	GGATG	9 cut(s)	628, 1429, 1435, 1546, 1867, 1911, 2332, 2437, 2578
BstFNI	CGCG	3 cut(s)	93, 2579, 2581
BstH2I	RGCGCY	2 cut(s)	776, 2940
BstHHI	GCGC	5 cut(s)	95, 775, 2581, 2583, 2939
BstMAI	GTCTC	7 cut(s)	9, 729, 1043, 1056, 2117, 2211, 2774
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 860, 1371, 1439, 1454
BstNI	CCWGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
BstNSI	RCATGY	4 cut(s)	896, 1806, 2319, 2837
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	8 cut(s)	1180, 1553, 1657, 2054, 2098, 2258, 2287, 2764
BstSFI	CTRYAG	3 cut(s)	904, 1449, 1482
BstSLI	GKGCMC	1 cut(s)	1872
BstSNI	TACGTA	1 cut(s)	1898
BstUI	CGCG	3 cut(s)	93, 2579, 2581
BstV1I	GCAGC	6 cut(s)	171, 219, 339, 727, 1772, 1786
BstV2I	GAAGAC	2 cut(s)	1593, 2021
BstX2I	RGATCY	5 cut(s)	790, 973, 1102, 1228, 2884
BstYI	RGATCY	5 cut(s)	790, 973, 1102, 1228, 2884
Bsu36I	CCTNAGG	1 cut(s)	1143
BsuRI	GGCC	6 cut(s)	83, 876, 1662, 1956, 2334, 2727
BtgI	CCRYGG	2 cut(s)	1250, 2805
BtgZI	GCGATG	2 cut(s)	2612, 2970
BtrI	CACGTC	2 cut(s)	2857, 3002
BtsCI	GGATG	9 cut(s)	628, 1429, 1435, 1546, 1867, 1911, 2332, 2437, 2578
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	6 cut(s)	608, 1341, 1367, 2186, 2382, 2523
BveI	ACCTGC	1 cut(s)	1556
Cac8I	GCNNGC	4 cut(s)	357, 1372, 2581, 2835
CaiI	CAGNNNCTG	1 cut(s)	352
CciI	TCATGA	3 cut(s)	478, 844, 2776
CfoI	GCGC	5 cut(s)	95, 775, 2581, 2583, 2939
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	8 cut(s)	82, 223, 642, 875, 1247, 1416, 1955, 2333
CseI	GACGC	4 cut(s)	358, 2351, 2444, 2585
Csp6I	GTAC	7 cut(s)	300, 1512, 2240, 2309, 2403, 2414, 2555
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	9 cut(s)	479, 845, 893, 1171, 1244, 1803, 2316, 2777, 2834
CviQI	GTAC	7 cut(s)	300, 1512, 2240, 2309, 2403, 2414, 2555
Eam1104I	CTCTTC	5 cut(s)	507, 1734, 1878, 2669, 2822
EarI	CTCTTC	5 cut(s)	507, 1734, 1878, 2669, 2822
EciI	GGCGGA	2 cut(s)	77, 300
Eco105I	TACGTA	1 cut(s)	1898
Eco130I	CCWWGG	4 cut(s)	824, 1419, 1951, 2009
Eco47I	GGWCC	4 cut(s)	223, 642, 1247, 1416
Eco47III	AGCGCT	1 cut(s)	2938
Eco57I	CTGAAG	4 cut(s)	308, 731, 1755, 2498
Eco81I	CCTNAGG	1 cut(s)	1143
Eco88I	CYCGRG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	1142
EcoO109I	RGGNCCY	3 cut(s)	82, 223, 642
EcoO65I	GGTNACC	1 cut(s)	499
EcoRII	CCWGG	8 cut(s)	1180, 1553, 1657, 2054, 2098, 2258, 2287, 2764
EcoT14I	CCWWGG	4 cut(s)	824, 1419, 1951, 2009
ErhI	CCWWGG	4 cut(s)	824, 1419, 1951, 2009
FaeI	CATG	9 cut(s)	482, 848, 896, 1174, 1247, 1806, 2319, 2780, 2837
FaqI	GGGAC	4 cut(s)	531, 763, 1354, 2116
FatI	CATG	9 cut(s)	478, 844, 892, 1170, 1243, 1802, 2315, 2776, 2833
FbaI	TGATCA	1 cut(s)	2773
FblI	GTMKAC	2 cut(s)	180, 2695
FokI	GGATG	9 cut(s)	635, 1436, 1442, 1533, 1874, 1898, 2339, 2444, 2585
FspBI	CTAG	2 cut(s)	156, 2010
GlaI	GCGC	5 cut(s)	94, 774, 2580, 2582, 2938
GsuI	CTGGAG	2 cut(s)	1563, 1855
HaeII	RGCGCY	2 cut(s)	776, 2940
HaeIII	GGCC	6 cut(s)	83, 876, 1662, 1956, 2334, 2727
HapII	CCGG	3 cut(s)	108, 1816, 1859
HgaI	GACGC	4 cut(s)	358, 2351, 2444, 2585
HhaI	GCGC	5 cut(s)	95, 775, 2581, 2583, 2939
Hin1II	CATG	9 cut(s)	482, 848, 896, 1174, 1247, 1806, 2319, 2780, 2837
Hin6I	GCGC	5 cut(s)	93, 773, 2579, 2581, 2937
HinP1I	GCGC	5 cut(s)	93, 773, 2579, 2581, 2937
HincII	GTYRAC	3 cut(s)	1150, 1696, 2696
HindII	GTYRAC	3 cut(s)	1150, 1696, 2696
HindIII	AAGCTT	3 cut(s)	1455, 2681, 2720
HpaI	GTTAAC	1 cut(s)	1150
HpaII	CCGG	3 cut(s)	108, 1816, 1859
HphI	GGTGA	6 cut(s)	97, 121, 493, 1475, 1736, 1805
Hpy166II	GTNNAC	8 cut(s)	181, 1150, 1254, 1416, 1575, 1696, 2403, 2696
Hpy8I	GTNNAC	8 cut(s)	181, 1150, 1254, 1416, 1575, 1696, 2403, 2696
HpyCH4III	ACNGT	5 cut(s)	1251, 2181, 2222, 2279, 2647
HpyCH4IV	ACGT	7 cut(s)	177, 370, 1897, 1942, 1980, 2856, 3001
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 860, 1371, 1439, 1454
HpySE526I	ACGT	7 cut(s)	177, 370, 1897, 1942, 1980, 2856, 3001
Hsp92II	CATG	9 cut(s)	482, 848, 896, 1174, 1247, 1806, 2319, 2780, 2837
HspAI	GCGC	5 cut(s)	93, 773, 2579, 2581, 2937
Kpn2I	TCCGGA	1 cut(s)	1858
Ksp22I	TGATCA	1 cut(s)	2773
KspAI	GTTAAC	1 cut(s)	1150
LmnI	GCTCC	4 cut(s)	199, 240, 1156, 1383
Lsp1109I	GCAGC	6 cut(s)	171, 219, 339, 727, 1772, 1786
LweI	GCATC	9 cut(s)	463, 613, 923, 1420, 2062, 2131, 2461, 2866, 3018
MaeI	CTAG	2 cut(s)	156, 2010
MaeII	ACGT	7 cut(s)	177, 370, 1897, 1942, 1980, 2856, 3001
MaeIII	GTNAC	5 cut(s)	499, 1981, 2363, 2504, 2905
MfeI	CAATTG	1 cut(s)	1764
MflI	RGATCY	5 cut(s)	790, 973, 1102, 1228, 2884
MhlI	GDGCHC	1 cut(s)	1872
MlyI	GAGTC	5 cut(s)	200, 1058, 1345, 1570, 1739
MmeI	TCCRAC	5 cut(s)	228, 285, 348, 1574, 1613
MroI	TCCGGA	1 cut(s)	1858
MroXI	GAANNNNTTC	2 cut(s)	371, 486
MslI	CAYNNNNRTG	3 cut(s)	1360, 2456, 2597
MspA1I	CMGCKG	1 cut(s)	2952
MspI	CCGG	3 cut(s)	108, 1816, 1859
MspR9I	CCNGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
MunI	CAATTG	1 cut(s)	1764
MvaI	CCWGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
MvnI	CGCG	3 cut(s)	93, 2579, 2581
MwoI	GCNNNNNNNGC	5 cut(s)	283, 860, 1371, 1439, 1454
NlaIII	CATG	9 cut(s)	482, 848, 896, 1174, 1247, 1806, 2319, 2780, 2837
NlaIV	GGNNCC	5 cut(s)	195, 596, 792, 1230, 1385
NmeAIII	GCCGAG	2 cut(s)	40, 170
NmuCI	GTSAC	4 cut(s)	499, 2363, 2504, 2905
NspI	RCATGY	4 cut(s)	896, 1806, 2319, 2837
NspV	TTCGAA	1 cut(s)	661
PaeI	GCATGC	1 cut(s)	2837
PaeR7I	CTCGAG	1 cut(s)	227
PagI	TCATGA	3 cut(s)	478, 844, 2776
PauI	GCGCGC	1 cut(s)	2579
PciI	ACATGT	2 cut(s)	892, 2315
PcsI	WCGNNNNNNNCGW	6 cut(s)	18, 45, 54, 75, 225, 381
PdmI	GAANNNNTTC	2 cut(s)	371, 486
PfeI	GAWTC	5 cut(s)	554, 833, 1034, 1276, 3005
PflMI	CCANNNNNTGG	2 cut(s)	540, 1952
PfoI	TCCNGGA	1 cut(s)	2764
PleI	GAGTC	5 cut(s)	200, 1058, 1345, 1570, 1739
PpsI	GAGTC	5 cut(s)	200, 1058, 1345, 1570, 1739
Ppu21I	YACGTR	1 cut(s)	1898
PpuMI	RGGWCCY	2 cut(s)	223, 642
PscI	ACATGT	2 cut(s)	892, 2315
PshBI	ATTAAT	1 cut(s)	630
Psp1406I	AACGTT	1 cut(s)	370
Psp5II	RGGWCCY	2 cut(s)	223, 642
Psp6I	CCWGG	8 cut(s)	1180, 1553, 1657, 2054, 2098, 2258, 2287, 2764
PspEI	GGTNACC	1 cut(s)	499
PspGI	CCWGG	8 cut(s)	1180, 1553, 1657, 2054, 2098, 2258, 2287, 2764
PspN4I	GGNNCC	5 cut(s)	195, 596, 792, 1230, 1385
PspPI	GGNCC	8 cut(s)	82, 223, 642, 875, 1247, 1416, 1955, 2333
PspPPI	RGGWCCY	2 cut(s)	223, 642
PspXI	VCTCGAGB	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	5 cut(s)	790, 973, 1102, 1228, 2884
PteI	GCGCGC	1 cut(s)	2579
RsaI	GTAC	7 cut(s)	301, 1513, 2241, 2310, 2404, 2415, 2556
RsaNI	GTAC	7 cut(s)	300, 1512, 2240, 2309, 2403, 2414, 2555
RseI	CAYNNNNRTG	3 cut(s)	1360, 2456, 2597
SalI	GTCGAC	1 cut(s)	2694
Sau96I	GGNCC	8 cut(s)	82, 223, 642, 875, 1247, 1416, 1955, 2333
SchI	GAGTC	5 cut(s)	200, 1058, 1345, 1570, 1739
ScrFI	CCNGG	8 cut(s)	1182, 1555, 1659, 2056, 2100, 2260, 2289, 2766
SduI	GDGCHC	1 cut(s)	1872
SfaNI	GCATC	9 cut(s)	463, 613, 923, 1420, 2062, 2131, 2461, 2866, 3018
SfcI	CTRYAG	3 cut(s)	904, 1449, 1482
Sfr274I	CTCGAG	1 cut(s)	227
SfuI	TTCGAA	1 cut(s)	661
SinI	GGWCC	4 cut(s)	223, 642, 1247, 1416
SlaI	CTCGAG	1 cut(s)	227
SmiMI	CAYNNNNRTG	3 cut(s)	1360, 2456, 2597
SmlI	CTYRAG	3 cut(s)	227, 272, 1747
SmoI	CTYRAG	3 cut(s)	227, 272, 1747
SnaBI	TACGTA	1 cut(s)	1898
SphI	GCATGC	1 cut(s)	2837
SsiI	CCGC	8 cut(s)	88, 91, 238, 311, 378, 1915, 2225, 2952
SspI	AATATT	1 cut(s)	1324
SspMI	CTAG	2 cut(s)	156, 2010
StyD4I	CCNGG	8 cut(s)	1180, 1553, 1657, 2054, 2098, 2258, 2287, 2764
StyI	CCWWGG	4 cut(s)	824, 1419, 1951, 2009
TaaI	ACNGT	5 cut(s)	1251, 2181, 2222, 2279, 2647
TaiI	ACGT	7 cut(s)	180, 373, 1900, 1945, 1983, 2859, 3004
TatI	WGTACW	2 cut(s)	299, 2402
TauI	GCSGC	4 cut(s)	93, 380, 2228, 2955
TfiI	GAWTC	5 cut(s)	554, 833, 1034, 1276, 3005
TscAI	CASTG	6 cut(s)	615, 1341, 1367, 2186, 2389, 2530
TseFI	GTSAC	4 cut(s)	499, 2363, 2504, 2905
TseI	GCWGC	6 cut(s)	159, 232, 352, 715, 1760, 1799
Tsp45I	GTSAC	4 cut(s)	499, 2363, 2504, 2905
TspDTI	ATGAA	9 cut(s)	471, 495, 525, 924, 1535, 1878, 2006, 2220, 2649
TspGWI	ACGGA	3 cut(s)	1015, 1515, 2326
TspRI	CASTG	6 cut(s)	615, 1341, 1367, 2186, 2389, 2530
Van91I	CCANNNNNTGG	2 cut(s)	540, 1952
VpaK11BI	GGWCC	4 cut(s)	223, 642, 1247, 1416
VspI	ATTAAT	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	1142
XapI	RAATTY	5 cut(s)	886, 923, 1083, 2283, 2757
XceI	RCATGY	4 cut(s)	896, 1806, 2319, 2837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1298
XhoI	CTCGAG	1 cut(s)	227
XmaJI	CCTAGG	1 cut(s)	2009
XmiI	GTMKAC	2 cut(s)	180, 2695
XmnI	GAANNNNTTC	2 cut(s)	371, 486
XspI	CTAG	2 cut(s)	156, 2010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.