Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

54575957 .. 54576418

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG408900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGCAGAGAACCAGTACTGTTGAAGTTCTTCAAGGGCTTCTGGACAATGAATGCGCAGCCACATGCAGATGCACACAATACGGCAGAAGCCCTCTCTCATCAGCTACAAACGGCAGAAGCAAGAATCCATGAACTCCAGCAAGAATTGACATCTGTTCGCCTGAATGAAACAGCAATGAATAGTAAGCTCAGGAGTGCTTCACAAGGGAAACGTTTAAGGGTAGAGAACTATGAAATGAATGTGGACTCTGTTCAAGATGGGTTATTGAGTGACTGGATTATAAGAGTAAATAAAAGGTCTAGGAGCACTAGTAGCCCTCTAAAGCACTCCCAAACAGAAGATAGTGGTTCAGTATTCAAAGAGGTGATGATAGCCACAGTCAGCAAACCAATCCAGAAGACTATACGAAGTTTAACAAAGCATTATCTTGGTGCTCTTCTTTCAGAATTGAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0012505 GO:0015629 GO:0017076 GO:0019001 GO:0019221 GO:0023052 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034097 GO:0034340 GO:0034341 GO:0034504 GO:0034612 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0060333 GO:0060337 GO:0065007 GO:0070013 GO:0070555 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071347 GO:0071356 GO:0071357 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

153

Amino Acids

17.32

Weight (kDa)

9.64

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
Acc16I	TGCGCA	1 cut(s)	57
AclI	AACGTT	1 cut(s)	214
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	5 cut(s)	25, 34, 257, 361, 454
AhlI	ACTAGT	1 cut(s)	311
AluBI	AGCT	2 cut(s)	106, 190
AluI	AGCT	2 cut(s)	106, 190
Alw21I	GWGCWC	2 cut(s)	311, 439
ApeKI	GCWGC	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	2 cut(s)	311, 439
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	2 cut(s)	99, 129
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	2 cut(s)	303, 312
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmcAI	AGTACT	1 cut(s)	18
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bse1I	ACTGG	2 cut(s)	14, 281
Bse3DI	GCAATG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	14, 281
BseXI	GCAGC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	311, 439
BsmI	GAATGC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	311, 439
BspCNI	CTCAG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	458
BspQI	GCTCTTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	14, 281
Bst4CI	ACNGT	2 cut(s)	21, 382
Bst6I	CTCTTC	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	407
CciI	TCATGA	1 cut(s)	458
CfoI	GCGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	65, 131, 459
CviJI	RGCY	7 cut(s)	39, 61, 92, 106, 190, 318, 377
CviKI_1	RGCY	7 cut(s)	39, 61, 92, 106, 190, 318, 377
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
FaeI	CATG	3 cut(s)	68, 134, 462
FaiI	YATR	6 cut(s)	66, 132, 234, 284, 407, 460
FatI	CATG	3 cut(s)	64, 130, 458
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	303, 312
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	3 cut(s)	68, 134, 462
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	126, 248
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	5 cut(s)	43, 193, 257, 397, 459
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	21, 382
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	68, 74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	3 cut(s)	68, 134, 462
HspAI	GCGC	1 cut(s)	56
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	7 cut(s)	27, 28, 152, 176, 178, 262, 410
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	303, 312
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	272
MboII	GAAGA	4 cut(s)	22, 353, 412, 431
MhlI	GDGCHC	2 cut(s)	311, 439
MluCI	AATT	2 cut(s)	146, 449
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	104, 330, 358
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	2 cut(s)	218, 416
MslI	CAYNNNNRTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	68, 134, 462
NmuCI	GTSAC	1 cut(s)	272
NsbI	TGCGCA	1 cut(s)	57
NspI	RCATGY	1 cut(s)	68
PagI	TCATGA	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	444
PctI	GAATGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	214
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	218, 416
SatI	GCNGC	1 cut(s)	59
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	311, 439
SetI	ASST	5 cut(s)	108, 192, 217, 302, 369
SfaNI	GCATC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	69
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	2 cut(s)	146, 449
SspMI	CTAG	2 cut(s)	303, 312
TaaI	ACNGT	2 cut(s)	21, 382
TaiI	ACGT	1 cut(s)	217
TasI	AATT	2 cut(s)	146, 449
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	218, 416
Tru9I	TTAA	2 cut(s)	218, 416
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	6 cut(s)	65, 147, 183, 194, 249, 254
XceI	RCATGY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	303, 312
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.