Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01050

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

22073 .. 23854

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGCAGAGAACTAGTACTGTTGAAGTTCGTCAAGGGCTTCTGGACAATGAATGCGCAGCCACATGCAGACGCACACAATACGGCAGAAGCCCTCTCTCATCAGCTACAAACGGCAGAAGCAAGAATCCATGAACTCCAGCAAGAATTGACATCTGTTCGCCTGAATGAAACAGCAATGAATAGTAAGATCAGGAGTGCTTCACAAGGGAAACGTTTAAGGGTAGAGAACTATGAAATGAATGTGGACTCTGTTCAAGACGGGTTATTGAGTGACTGGATTATTAGAGTAAATAAAAGGTCTAGGAGCACTAGTAGCCCTCTAAAGCACTCCCAAACAGAAGATAGTGGTTCAGTATTCAAAGAGGTGATGATAGCCACAGTCAGCAAACCAATCCAGAAGACTATACGAAGTTTAACAAAGCATTATCTTGGTGCTCTTCTTTCAGAACAAGAAGAAAAGGAAAATCTTCAGAAGGGAATAAGACAACAGTTTCAGGAAATGGTGCTTCAATATCATGGAGGAAACTCAAATGTCGATGACATTGATCATATTTTGGCTTCAATCAAAGATGTTGAGATTACTTCTCATAGCATTAGAGAGTTCCTGCCTAAGGTTAACTGGCAGCGGTTGGCTTCCATGTATGTTCCTGGTCGTTCCGGTGAAGAATATGAAGCAAGGTGGTTGAACCGGGAGGATCGCTTAATCAACCATGAACCATGGACTGTAGATGAGGACAAGAGAATTCTGGAGCTTGTTCAGAAGCAGGGGGTCAATGATTGGATTGATATAGCACCTGCATCACTATTTCTAAAAGGGATTAACAGGACTCCATTTCAGTGCTTGGCACGCTATCCAAGGAGTCTAAATGCTTTCATACTGAAAGGTGAATGGAGCAAGGAAGAGGATGCGAAACTCAGCTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

309

Amino Acids

35.56

Weight (kDa)

6.58

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	239 - 285	6.2e-08	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	241 - 306	2.2e-12	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	805
Acc16I	TGCGCA	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	805
AciI	CCGC	1 cut(s)	628
AclI	AACGTT	1 cut(s)	214
AclWI	GGATC	1 cut(s)	705
AcsI	RAATTY	1 cut(s)	744
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	6 cut(s)	25, 257, 361, 512, 564, 688
AhlI	ACTAGT	2 cut(s)	13, 311
AjnI	CCWGG	1 cut(s)	649
AluBI	AGCT	3 cut(s)	106, 754, 921
AluI	AGCT	3 cut(s)	106, 754, 921
Alw21I	GWGCWC	2 cut(s)	311, 439
AlwI	GGATC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	58, 625
ApoI	RAATTY	1 cut(s)	744
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	379, 674, 899
AxyI	CCTNAGG	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	2 cut(s)	311, 439
BbvI	GCAGC	2 cut(s)	70, 637
BceAI	ACGGC	2 cut(s)	99, 129
BciT130I	CCWGG	1 cut(s)	651
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	692
BcuI	ACTAGT	2 cut(s)	13, 311
BfaI	CTAG	3 cut(s)	14, 303, 312
BfmI	CTRYAG	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	805
BisI	GCNGC	2 cut(s)	59, 626
BlsI	GCNGC	2 cut(s)	60, 627
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	651, 692
BmrFI	CCNGG	2 cut(s)	651, 692
BmsI	GCATC	2 cut(s)	809, 898
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	2 cut(s)	122, 770
BpuMI	CCSGG	1 cut(s)	692
BsaJI	CCNNGG	2 cut(s)	719, 857
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	281, 626
Bse21I	CCTNAGG	1 cut(s)	612
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	719, 857
BseGI	GGATG	1 cut(s)	913
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	281, 626
BseXI	GCAGC	2 cut(s)	70, 637
BsiHKAI	GWGCWC	2 cut(s)	311, 439
BsiSI	CCGG	2 cut(s)	660, 691
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	311, 439
Bsp143I	GATC	3 cut(s)	189, 547, 697
Bsp19I	CCATGG	1 cut(s)	719
BspACI	CCGC	1 cut(s)	628
BspCNI	CTCAG	1 cut(s)	930
BspMI	ACCTGC	1 cut(s)	805
BspPI	GGATC	1 cut(s)	705
BspQI	GCTCTTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	281, 626
BssECI	CCNNGG	2 cut(s)	719, 857
BssMI	GATC	3 cut(s)	189, 547, 697
BssT1I	CCWWGG	2 cut(s)	719, 857
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	4 cut(s)	21, 382, 492, 727
Bst6I	CTCTTC	2 cut(s)	444, 897
BstC8I	GCNNGC	1 cut(s)	850
BstDEI	CTNAG	2 cut(s)	612, 917
BstDSI	CCRYGG	1 cut(s)	719
BstENI	CCTNNNNNAGG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	913
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	3 cut(s)	192, 550, 700
BstMBI	GATC	3 cut(s)	189, 547, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 849
BstNI	CCWGG	1 cut(s)	651
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	649, 690
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	2 cut(s)	70, 637
BstV2I	GAAGAC	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	1 cut(s)	913
BtsIMutI	CAGTG	1 cut(s)	845
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	1 cut(s)	850
CfoI	GCGC	1 cut(s)	58
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	6 cut(s)	65, 131, 518, 640, 713, 720
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	612, 917
DpnI	GATC	3 cut(s)	191, 549, 699
DpnII	GATC	3 cut(s)	189, 547, 697
Eam1104I	CTCTTC	2 cut(s)	444, 897
EarI	CTCTTC	2 cut(s)	444, 897
Eco130I	CCWWGG	2 cut(s)	719, 857
Eco57I	CTGAAG	1 cut(s)	455
Eco81I	CCTNAGG	1 cut(s)	612
EcoNI	CCTNNNNNAGG	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	744
EcoRII	CCWGG	1 cut(s)	649
EcoT14I	CCWWGG	2 cut(s)	719, 857
ErhI	CCWWGG	2 cut(s)	719, 857
FaeI	CATG	6 cut(s)	68, 134, 521, 643, 716, 723
FatI	CATG	6 cut(s)	64, 130, 517, 639, 712, 719
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	59, 626
FokI	GGATG	1 cut(s)	920
Fsp4HI	GCNGC	2 cut(s)	59, 626
FspBI	CTAG	3 cut(s)	14, 303, 312
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	59, 626
GsuI	CTGGAG	2 cut(s)	122, 770
HapII	CCGG	2 cut(s)	660, 691
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	6 cut(s)	68, 134, 521, 643, 716, 723
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	4 cut(s)	126, 248, 829, 862
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	660, 691
HphI	GGTGA	3 cut(s)	379, 674, 899
Hpy166II	GTNNAC	2 cut(s)	247, 619
Hpy188I	TCNGA	4 cut(s)	448, 474, 762, 925
Hpy188III	TCNNGA	6 cut(s)	43, 193, 257, 397, 497, 749
Hpy8I	GTNNAC	2 cut(s)	247, 619
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	4 cut(s)	21, 382, 492, 727
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	68, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 849
HpyF3I	CTNAG	2 cut(s)	612, 917
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	6 cut(s)	68, 134, 521, 643, 716, 723
HspAI	GCGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	189, 547, 697
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	4 cut(s)	306, 751, 894, 926
Lsp1109I	GCAGC	2 cut(s)	70, 637
LweI	GCATC	2 cut(s)	809, 898
MaeI	CTAG	3 cut(s)	14, 303, 312
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	3 cut(s)	191, 549, 699
MboI	GATC	3 cut(s)	189, 547, 697
MboII	GAAGA	7 cut(s)	353, 412, 431, 461, 467, 677, 914
MhlI	GDGCHC	2 cut(s)	311, 439
MluCI	AATT	2 cut(s)	146, 744
MlyI	GAGTC	3 cut(s)	242, 823, 871
MnlI	CCTC	7 cut(s)	104, 330, 358, 515, 688, 727, 898
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	5 cut(s)	218, 416, 618, 704, 822
MslI	CAYNNNNRTG	1 cut(s)	838
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	2 cut(s)	660, 691
MspR9I	CCNGG	2 cut(s)	651, 692
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	315, 849
NciI	CCSGG	1 cut(s)	692
NcoI	CCATGG	1 cut(s)	719
NdeII	GATC	3 cut(s)	189, 547, 697
NlaIII	CATG	6 cut(s)	68, 134, 521, 643, 716, 723
NmuCI	GTSAC	1 cut(s)	272
NsbI	TGCGCA	1 cut(s)	57
NspI	RCATGY	1 cut(s)	68
PaqCI	CACCTGC	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	444
PctI	GAATGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	60, 627
PleI	GAGTC	3 cut(s)	242, 823, 870
PpsI	GAGTC	3 cut(s)	242, 823, 870
Psp1406I	AACGTT	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	838
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	5 cut(s)	218, 416, 618, 704, 822
SatI	GCNGC	2 cut(s)	59, 626
Sau3AI	GATC	3 cut(s)	189, 547, 697
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	3 cut(s)	242, 823, 871
ScrFI	CCNGG	2 cut(s)	651, 692
SduI	GDGCHC	2 cut(s)	311, 439
SfaNI	GCATC	2 cut(s)	809, 898
SfcI	CTRYAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	1 cut(s)	838
SpeI	ACTAGT	2 cut(s)	13, 311
Sse9I	AATT	2 cut(s)	146, 744
SsiI	CCGC	1 cut(s)	628
SspMI	CTAG	3 cut(s)	14, 303, 312
StyD4I	CCNGG	2 cut(s)	649, 690
StyI	CCWWGG	2 cut(s)	719, 857
TaaI	ACNGT	4 cut(s)	21, 382, 492, 727
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	537
TasI	AATT	2 cut(s)	146, 744
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	5 cut(s)	218, 416, 618, 704, 822
Tru9I	TTAA	5 cut(s)	218, 416, 618, 704, 822
TscAI	CASTG	1 cut(s)	845
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	58, 625
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	9 cut(s)	65, 147, 183, 194, 249, 254, 687, 729, 865
TspRI	CASTG	1 cut(s)	845
XagI	CCTNNNNNAGG	1 cut(s)	611
XapI	RAATTY	1 cut(s)	744
XceI	RCATGY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	3 cut(s)	14, 303, 312
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.